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LeeFilter.c
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/* Generated by Cython 0.15.1 on Tue Jun 5 10:29:39 2012 */
#define PY_SSIZE_T_CLEAN
#include "Python.h"
#ifndef Py_PYTHON_H
#error Python headers needed to compile C extensions, please install development version of Python.
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#define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
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#if !defined(WIN32) && !defined(MS_WINDOWS)
#ifndef __stdcall
#define __stdcall
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#ifndef __cdecl
#define __cdecl
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#ifndef __fastcall
#define __fastcall
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#endif
#ifndef DL_IMPORT
#define DL_IMPORT(t) t
#endif
#ifndef DL_EXPORT
#define DL_EXPORT(t) t
#endif
#ifndef PY_LONG_LONG
#define PY_LONG_LONG LONG_LONG
#endif
#if PY_VERSION_HEX < 0x02040000
#define METH_COEXIST 0
#define PyDict_CheckExact(op) (Py_TYPE(op) == &PyDict_Type)
#define PyDict_Contains(d,o) PySequence_Contains(d,o)
#endif
#if PY_VERSION_HEX < 0x02050000
typedef int Py_ssize_t;
#define PY_SSIZE_T_MAX INT_MAX
#define PY_SSIZE_T_MIN INT_MIN
#define PY_FORMAT_SIZE_T ""
#define PyInt_FromSsize_t(z) PyInt_FromLong(z)
#define PyInt_AsSsize_t(o) __Pyx_PyInt_AsInt(o)
#define PyNumber_Index(o) PyNumber_Int(o)
#define PyIndex_Check(o) PyNumber_Check(o)
#define PyErr_WarnEx(category, message, stacklevel) PyErr_Warn(category, message)
#endif
#if PY_VERSION_HEX < 0x02060000
#define Py_REFCNT(ob) (((PyObject*)(ob))->ob_refcnt)
#define Py_TYPE(ob) (((PyObject*)(ob))->ob_type)
#define Py_SIZE(ob) (((PyVarObject*)(ob))->ob_size)
#define PyVarObject_HEAD_INIT(type, size) \
PyObject_HEAD_INIT(type) size,
#define PyType_Modified(t)
typedef struct {
void *buf;
PyObject *obj;
Py_ssize_t len;
Py_ssize_t itemsize;
int readonly;
int ndim;
char *format;
Py_ssize_t *shape;
Py_ssize_t *strides;
Py_ssize_t *suboffsets;
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} Py_buffer;
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#define PyBUF_C_CONTIGUOUS (0x0020 | PyBUF_STRIDES)
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#define PyBUF_INDIRECT (0x0100 | PyBUF_STRIDES)
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#define __Pyx_BUILTIN_MODULE_NAME "__builtin__"
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#define __Pyx_BUILTIN_MODULE_NAME "builtins"
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#define Py_TPFLAGS_CHECKTYPES 0
#define Py_TPFLAGS_HAVE_INDEX 0
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#define PyBytes_FromStringAndSize PyString_FromStringAndSize
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#define PyBytes_AsString PyString_AsString
#define PyBytes_AsStringAndSize PyString_AsStringAndSize
#define PyBytes_Size PyString_Size
#define PyBytes_AS_STRING PyString_AS_STRING
#define PyBytes_GET_SIZE PyString_GET_SIZE
#define PyBytes_Repr PyString_Repr
#define PyBytes_Concat PyString_Concat
#define PyBytes_ConcatAndDel PyString_ConcatAndDel
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#if PY_VERSION_HEX < 0x02060000
#define PySet_Check(obj) PyObject_TypeCheck(obj, &PySet_Type)
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#ifndef PySet_CheckExact
#define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type)
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#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type)
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#define PyIntObject PyLongObject
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#define PyInt_FromLong PyLong_FromLong
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#define PyInt_FromSsize_t PyLong_FromSsize_t
#define PyInt_AsLong PyLong_AsLong
#define PyInt_AS_LONG PyLong_AS_LONG
#define PyInt_AsSsize_t PyLong_AsSsize_t
#define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask
#define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask
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#if PY_MAJOR_VERSION >= 3
#define PyBoolObject PyLongObject
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#if PY_VERSION_HEX < 0x03020000
typedef long Py_hash_t;
#define __Pyx_PyInt_FromHash_t PyInt_FromLong
#define __Pyx_PyInt_AsHash_t PyInt_AsLong
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#define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t
#define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t
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#define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y)
#define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y)
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#define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y)
#define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y)
#endif
#if (PY_MAJOR_VERSION < 3) || (PY_VERSION_HEX >= 0x03010300)
#define __Pyx_PySequence_GetSlice(obj, a, b) PySequence_GetSlice(obj, a, b)
#define __Pyx_PySequence_SetSlice(obj, a, b, value) PySequence_SetSlice(obj, a, b, value)
#define __Pyx_PySequence_DelSlice(obj, a, b) PySequence_DelSlice(obj, a, b)
#else
#define __Pyx_PySequence_GetSlice(obj, a, b) (unlikely(!(obj)) ? \
(PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), (PyObject*)0) : \
(likely((obj)->ob_type->tp_as_mapping) ? (PySequence_GetSlice(obj, a, b)) : \
(PyErr_Format(PyExc_TypeError, "'%.200s' object is unsliceable", (obj)->ob_type->tp_name), (PyObject*)0)))
#define __Pyx_PySequence_SetSlice(obj, a, b, value) (unlikely(!(obj)) ? \
(PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), -1) : \
(likely((obj)->ob_type->tp_as_mapping) ? (PySequence_SetSlice(obj, a, b, value)) : \
(PyErr_Format(PyExc_TypeError, "'%.200s' object doesn't support slice assignment", (obj)->ob_type->tp_name), -1)))
#define __Pyx_PySequence_DelSlice(obj, a, b) (unlikely(!(obj)) ? \
(PyErr_SetString(PyExc_SystemError, "null argument to internal routine"), -1) : \
(likely((obj)->ob_type->tp_as_mapping) ? (PySequence_DelSlice(obj, a, b)) : \
(PyErr_Format(PyExc_TypeError, "'%.200s' object doesn't support slice deletion", (obj)->ob_type->tp_name), -1)))
#endif
#if PY_MAJOR_VERSION >= 3
#define PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func))
#endif
#if PY_VERSION_HEX < 0x02050000
#define __Pyx_GetAttrString(o,n) PyObject_GetAttrString((o),((char *)(n)))
#define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),((char *)(n)),(a))
#define __Pyx_DelAttrString(o,n) PyObject_DelAttrString((o),((char *)(n)))
#else
#define __Pyx_GetAttrString(o,n) PyObject_GetAttrString((o),(n))
#define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),(n),(a))
#define __Pyx_DelAttrString(o,n) PyObject_DelAttrString((o),(n))
#endif
#if PY_VERSION_HEX < 0x02050000
#define __Pyx_NAMESTR(n) ((char *)(n))
#define __Pyx_DOCSTR(n) ((char *)(n))
#else
#define __Pyx_NAMESTR(n) (n)
#define __Pyx_DOCSTR(n) (n)
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#ifndef __PYX_EXTERN_C
#ifdef __cplusplus
#define __PYX_EXTERN_C extern "C"
#else
#define __PYX_EXTERN_C extern
#endif
#endif
#if defined(WIN32) || defined(MS_WINDOWS)
#define _USE_MATH_DEFINES
#endif
#include <math.h>
#define __PYX_HAVE__LeeFilter
#define __PYX_HAVE_API__LeeFilter
#include "stdio.h"
#include "stdlib.h"
#include "numpy/arrayobject.h"
#include "numpy/ufuncobject.h"
#ifdef _OPENMP
#include <omp.h>
#endif /* _OPENMP */
#ifdef PYREX_WITHOUT_ASSERTIONS
#define CYTHON_WITHOUT_ASSERTIONS
#endif
/* inline attribute */
#ifndef CYTHON_INLINE
#if defined(__GNUC__)
#define CYTHON_INLINE __inline__
#elif defined(_MSC_VER)
#define CYTHON_INLINE __inline
#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
#define CYTHON_INLINE inline
#else
#define CYTHON_INLINE
#endif
#endif
/* unused attribute */
#ifndef CYTHON_UNUSED
# if defined(__GNUC__)
# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
# define CYTHON_UNUSED __attribute__ ((__unused__))
# else
# define CYTHON_UNUSED
# endif
# elif defined(__ICC) || defined(__INTEL_COMPILER)
# define CYTHON_UNUSED __attribute__ ((__unused__))
# else
# define CYTHON_UNUSED
# endif
#endif
typedef struct {PyObject **p; char *s; const long n; const char* encoding; const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; /*proto*/
/* Type Conversion Predeclarations */
#define __Pyx_PyBytes_FromUString(s) PyBytes_FromString((char*)s)
#define __Pyx_PyBytes_AsUString(s) ((unsigned char*) PyBytes_AsString(s))
#define __Pyx_Owned_Py_None(b) (Py_INCREF(Py_None), Py_None)
#define __Pyx_PyBool_FromLong(b) ((b) ? (Py_INCREF(Py_True), Py_True) : (Py_INCREF(Py_False), Py_False))
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x);
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
static CYTHON_INLINE size_t __Pyx_PyInt_AsSize_t(PyObject*);
#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
#ifdef __GNUC__
/* Test for GCC > 2.95 */
#if __GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95))
#define likely(x) __builtin_expect(!!(x), 1)
#define unlikely(x) __builtin_expect(!!(x), 0)
#else /* __GNUC__ > 2 ... */
#define likely(x) (x)
#define unlikely(x) (x)
#endif /* __GNUC__ > 2 ... */
#else /* __GNUC__ */
#define likely(x) (x)
#define unlikely(x) (x)
#endif /* __GNUC__ */
static PyObject *__pyx_m;
static PyObject *__pyx_b;
static PyObject *__pyx_empty_tuple;
static PyObject *__pyx_empty_bytes;
static int __pyx_lineno;
static int __pyx_clineno = 0;
static const char * __pyx_cfilenm= __FILE__;
static const char *__pyx_filename;
#if !defined(CYTHON_CCOMPLEX)
#if defined(__cplusplus)
#define CYTHON_CCOMPLEX 1
#elif defined(_Complex_I)
#define CYTHON_CCOMPLEX 1
#else
#define CYTHON_CCOMPLEX 0
#endif
#endif
#if CYTHON_CCOMPLEX
#ifdef __cplusplus
#include <complex>
#else
#include <complex.h>
#endif
#endif
#if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__)
#undef _Complex_I
#define _Complex_I 1.0fj
#endif
static const char *__pyx_f[] = {
"LeeFilter.pyx",
"numpy.pxd",
};
/* "numpy.pxd":719
* # in Cython to enable them only on the right systems.
*
* ctypedef npy_int8 int8_t # <<<<<<<<<<<<<<
* ctypedef npy_int16 int16_t
* ctypedef npy_int32 int32_t
*/
typedef npy_int8 __pyx_t_5numpy_int8_t;
/* "numpy.pxd":720
*
* ctypedef npy_int8 int8_t
* ctypedef npy_int16 int16_t # <<<<<<<<<<<<<<
* ctypedef npy_int32 int32_t
* ctypedef npy_int64 int64_t
*/
typedef npy_int16 __pyx_t_5numpy_int16_t;
/* "numpy.pxd":721
* ctypedef npy_int8 int8_t
* ctypedef npy_int16 int16_t
* ctypedef npy_int32 int32_t # <<<<<<<<<<<<<<
* ctypedef npy_int64 int64_t
* #ctypedef npy_int96 int96_t
*/
typedef npy_int32 __pyx_t_5numpy_int32_t;
/* "numpy.pxd":722
* ctypedef npy_int16 int16_t
* ctypedef npy_int32 int32_t
* ctypedef npy_int64 int64_t # <<<<<<<<<<<<<<
* #ctypedef npy_int96 int96_t
* #ctypedef npy_int128 int128_t
*/
typedef npy_int64 __pyx_t_5numpy_int64_t;
/* "numpy.pxd":726
* #ctypedef npy_int128 int128_t
*
* ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<<
* ctypedef npy_uint16 uint16_t
* ctypedef npy_uint32 uint32_t
*/
typedef npy_uint8 __pyx_t_5numpy_uint8_t;
/* "numpy.pxd":727
*
* ctypedef npy_uint8 uint8_t
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* ctypedef npy_uint32 uint32_t
* ctypedef npy_uint64 uint64_t
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/* "numpy.pxd":728
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* ctypedef npy_uint64 uint64_t
* #ctypedef npy_uint96 uint96_t
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/* "numpy.pxd":729
* ctypedef npy_uint16 uint16_t
* ctypedef npy_uint32 uint32_t
* ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<<
* #ctypedef npy_uint96 uint96_t
* #ctypedef npy_uint128 uint128_t
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typedef npy_uint64 __pyx_t_5numpy_uint64_t;
/* "numpy.pxd":733
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*
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* ctypedef npy_float64 float64_t
* #ctypedef npy_float80 float80_t
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typedef npy_float32 __pyx_t_5numpy_float32_t;
/* "numpy.pxd":734
*
* ctypedef npy_float32 float32_t
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* #ctypedef npy_float128 float128_t
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typedef npy_float64 __pyx_t_5numpy_float64_t;
/* "numpy.pxd":743
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* ctypedef npy_longlong long_t
* ctypedef npy_longlong longlong_t
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typedef npy_long __pyx_t_5numpy_int_t;
/* "numpy.pxd":744
* # numpy.int corresponds to 'l' and numpy.long to 'q'
* ctypedef npy_long int_t
* ctypedef npy_longlong long_t # <<<<<<<<<<<<<<
* ctypedef npy_longlong longlong_t
*
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typedef npy_longlong __pyx_t_5numpy_long_t;
/* "numpy.pxd":745
* ctypedef npy_long int_t
* ctypedef npy_longlong long_t
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*
* ctypedef npy_ulong uint_t
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typedef npy_longlong __pyx_t_5numpy_longlong_t;
/* "numpy.pxd":747
* ctypedef npy_longlong longlong_t
*
* ctypedef npy_ulong uint_t # <<<<<<<<<<<<<<
* ctypedef npy_ulonglong ulong_t
* ctypedef npy_ulonglong ulonglong_t
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typedef npy_ulong __pyx_t_5numpy_uint_t;
/* "numpy.pxd":748
*
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typedef npy_ulonglong __pyx_t_5numpy_ulong_t;
/* "numpy.pxd":749
* ctypedef npy_ulong uint_t
* ctypedef npy_ulonglong ulong_t
* ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<<
*
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typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;
/* "numpy.pxd":751
* ctypedef npy_ulonglong ulonglong_t
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/* "numpy.pxd":754
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/* "numpy.pxd":759
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typedef npy_cdouble __pyx_t_5numpy_cdouble_t;
/* "numpy.pxd":760
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* ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<<
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typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t;
/* "numpy.pxd":762
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static char __pyx_k____test__[] = "__test__";
static char __pyx_k__LeeFilter[] = "LeeFilter";
static char __pyx_k__ValueError[] = "ValueError";
static char __pyx_k__RuntimeError[] = "RuntimeError";
static char __pyx_k__uniform_filter[] = "uniform_filter";
static PyObject *__pyx_kp_u_1;
static PyObject *__pyx_kp_u_11;
static PyObject *__pyx_n_s_13;
static PyObject *__pyx_kp_u_3;
static PyObject *__pyx_kp_u_5;
static PyObject *__pyx_kp_u_7;
static PyObject *__pyx_kp_u_8;
static PyObject *__pyx_n_s__Array;
static PyObject *__pyx_n_s__DTYPE;
static PyObject *__pyx_n_s__LeeFilter;
static PyObject *__pyx_n_s__N;
static PyObject *__pyx_n_s__RuntimeError;
static PyObject *__pyx_n_s__ValueError;
static PyObject *__pyx_n_s____main__;
static PyObject *__pyx_n_s____test__;
static PyObject *__pyx_n_s__boxcar;
static PyObject *__pyx_n_s__dtype;
static PyObject *__pyx_n_s__float64;
static PyObject *__pyx_n_s__mode;
static PyObject *__pyx_n_s__np;
static PyObject *__pyx_n_s__numpy;
static PyObject *__pyx_n_s__range;
static PyObject *__pyx_n_s__reflect;
static PyObject *__pyx_n_s__sig;
static PyObject *__pyx_n_s__uniform_filter;
static PyObject *__pyx_n_s__xrange;
static PyObject *__pyx_n_s__zeros;
static PyObject *__pyx_int_2;
static PyObject *__pyx_int_15;
static PyObject *__pyx_k_tuple_2;
static PyObject *__pyx_k_tuple_4;
static PyObject *__pyx_k_tuple_6;
static PyObject *__pyx_k_tuple_9;
static PyObject *__pyx_k_tuple_10;
static PyObject *__pyx_k_tuple_12;
/* "LeeFilter.pyx":13
* @cython.wraparound(False)
* #@cython.nonecheck(False)
* def LeeFilter(np.ndarray[double, ndim=2] Array, int N = 7, float sig = 5, mode="reflect"): # <<<<<<<<<<<<<<
* """
* N = size of filter box
*/
static PyObject *__pyx_pf_9LeeFilter_LeeFilter(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static char __pyx_doc_9LeeFilter_LeeFilter[] = "\n N = size of filter box\n Sig = Estimate of Variance\n mode = mode for convolution, defauts to reflect\n ";
static PyMethodDef __pyx_mdef_9LeeFilter_LeeFilter = {__Pyx_NAMESTR("LeeFilter"), (PyCFunction)__pyx_pf_9LeeFilter_LeeFilter, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_9LeeFilter_LeeFilter)};
static PyObject *__pyx_pf_9LeeFilter_LeeFilter(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
PyArrayObject *__pyx_v_Array = 0;
int __pyx_v_N;
float __pyx_v_sig;
PyObject *__pyx_v_mode = 0;
int __pyx_v_Delta;
int __pyx_v_n_row;
int __pyx_v_n_col;
float __pyx_v_total;