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drtaGenerateEvents.m~
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function drtaGenerateEvents(handles)
% hObject handle to drtaThresholdPush (see GCBO)
% handles structure with handles and user data (see GUIDATA)
%Genterates the header information for events, etc saved in jt_times and drg files
oldTrialNo=handles.p.trialNo;
generate_dio_bits=0;
oldTrialNo=handles.p.trialNo;
%Events
handles.draq_d.noEvents=0;
t_start_index=0;
t_start_events=[];
if ~isfield(handles,'drta_p')
handles.drta_p.exc_sn=0;
end
% determine program type and set up event labels
switch handles.p.which_c_program
case(1)
%dropcnsampler
%This is a dg file
handles.draq_d.nEventTypes=2;
handles.draq_d.eventlabels=[];
handles.draq_d.eventlabels{1}='FinalValve';
handles.draq_d.eventlabels{2}='OdorOn';
%Find which odors were used
dropc_nsamp_odors=[];
ii_dropc_nsamp_odors=0;
FV_interval=0;
dropc_nsamp_odorNo=[];
for trialNo=1:handles.draq_d.noTrials
trialNo
tic
handles.p.trialNo=trialNo;
data=drtaGetTraceData(handles);
digi = data(:,handles.draq_p.no_chans);
shiftdat=bitand(digi,1+2+4+8+16+32);
%For some reason the first trial is incorrect and has a 63 in
%it
shiftdat=shiftdat(shiftdat<63);
%Find the vaule of the first number different from zero
first_not_zero_ii=find(shiftdat>0,1,'first');
if ~isempty(first_not_zero_ii)
first_not_zero=shiftdat(first_not_zero_ii);
if first_not_zero==4
%This is an odor, find which odor
found_odor=0;
for odorNo=[1 2 8 16 32]
first_odor_ii=find(shiftdat==odorNo,1,'first');
if ~isempty(first_odor_ii)
found_odor=1;
odor_ii(trialNo)=first_odor_ii;
FV_interval=first_odor_ii-first_not_zero_ii;
exclude_trial(trialNo)=0;
dropc_nsamp_odorNo(trialNo)=odorNo;
if isempty(dropc_nsamp_odors==odorNo)
ii_dropc_nsamp_odors=ii_dropc_nsamp_odors+1;
dropc_nsamp_odors(ii_dropc_nsamp_odors)=odorNo;
end
end
end
if found_odor==0
%This is odor 4?
%If there are at least 2 sec left this is indeed
%odor 4
first_four_ii=find(shiftdat==4,1,'first');
if ((length(shiftdat)-first_four_ii)/handles.draq_p.ActualRate)>=1.99
ii_dropc_nsamp_odors=ii_dropc_nsamp_odors+1;
dropc_nsamp_odors(ii_dropc_nsamp_odors)=4;
dropc_nsamp_odorNo(trialNo)=4;
exclude_trial(trialNo)=0;
odor_ii(trialNo)=first_four_ii+1*handles.draq_p.ActualRate;
else
exclude_trial(trialNo)=1;
end
end
else
%This may be a phantom odor, or a trial to be discarded
if first_not_zero==16
%Phantom odor
exclude_trial(trialNo)=0;
dropc_nsamp_odorNo(trialNo)=-1;
else
%Exclude this trial
exclude_trial(trialNo)=1;
end
end
else
%Exclude this trial
exclude_trial(trialNo)=1;
end
% figure(1)
% plot(shiftdat)
% pffft=1
end
dropc_nsamp_odors=sort(dropc_nsamp_odors);
for jj=1:length(dropc_nsamp_odors)
handles.draq_d.nEventTypes=handles.draq_d.nEventTypes+1;
handles.draq_d.eventlabels{handles.draq_d.nEventTypes}=['Odor' num2str(dropc_nsamp_odors(jj))];
end
handles.draq_d.nEventTypes=handles.draq_d.nEventTypes+1;
handles.draq_d.eventlabels{handles.draq_d.nEventTypes}='Phantom';
handles.draq_d.nEvPerType=zeros(1,handles.draq_d.nEventTypes);
pffft=1
case(2)
%dropcspm
handles.draq_d.nEvPerType=zeros(1,17);
handles.draq_d.nEventTypes=17;
handles.draq_d.eventlabels=cell(1,17);
handles.draq_d.eventlabels{1}='TStart';
handles.draq_d.eventlabels{2}='OdorOn';
handles.draq_d.eventlabels{3}='Hit';
handles.draq_d.eventlabels{4}='HitE';
handles.draq_d.eventlabels{5}='S+';
handles.draq_d.eventlabels{6}='S+E';
handles.draq_d.eventlabels{7}='Miss';
handles.draq_d.eventlabels{8}='MissE';
handles.draq_d.eventlabels{9}='CR';
handles.draq_d.eventlabels{10}='CRE';
handles.draq_d.eventlabels{11}='S-';
handles.draq_d.eventlabels{12}='S-E';
handles.draq_d.eventlabels{13}='FA';
handles.draq_d.eventlabels{14}='FAE';
handles.draq_d.eventlabels{15}='Reinf';
handles.draq_d.eventlabels{16}='Short';
handles.draq_d.eventlabels{17}='Inter';
case(3)
%background
handles.draq_d.nEvPerType=zeros(1,9);
handles.draq_d.nEventTypes=9;
handles.draq_d.eventlabels=cell(1,9);
handles.draq_d.eventlabels{1}='OdorA';
handles.draq_d.eventlabels{2}='OdorB';
handles.draq_d.eventlabels{3}='OdorAB';
handles.draq_d.eventlabels{4}='BkgA';
handles.draq_d.eventlabels{5}='BkgB';
handles.draq_d.eventlabels{6}='OdorBBkgA';
handles.draq_d.eventlabels{7}='OdorABkgB';
handles.draq_d.eventlabels{8}='OdorBBkgB';
handles.draq_d.eventlabels{9}='OdorABkgA';
case(4)
%spmult
prompt = {'Enter the number of odors used as S+:'};
dlg_title = 'Input for spmult';
num_lines = 1;
answer = inputdlg(prompt,dlg_title,num_lines);
num_spmult_odors=str2num(answer{1});
handles.draq_d.nsp_odors = num_spmult_odors;
handles.draq_d.nEvPerType=zeros(1,9+num_spmult_odors*3);
handles.draq_d.nEventTypes=9+num_spmult_odors*3;
handles.draq_d.eventlabels=cell(1,9+num_spmult_odors*3);
handles.draq_d.eventlabels{1}='TStart';
handles.draq_d.eventlabels{2}='OdorOn';
handles.draq_d.eventlabels{3}='CR';
handles.draq_d.eventlabels{4}='S-';
handles.draq_d.eventlabels{5}='FA';
handles.draq_d.eventlabels{6}='Reinf';
handles.draq_d.eventlabels{7}='S+';
handles.draq_d.eventlabels{8}='Hit';
handles.draq_d.eventlabels{9}='Miss';
for odNum=1:num_spmult_odors
handles.draq_d.eventlabels{9+3*(odNum-1)+1}=['Odor' num2str(odNum) '-S+'];
handles.draq_d.eventlabels{9+3*(odNum-1)+2}=['Odor' num2str(odNum) '-Hit'];
handles.draq_d.eventlabels{9+3*(odNum-1)+3}=['Odor' num2str(odNum) '-Miss'];
end
case (5)
%mspy
[FileName,PathName] = uigetfile('*.*','Enter location of keys.dat file');
fullName=[PathName,FileName];
fid=fopen(fullName);
sec_post_trigger=textscan(fid,'%d',1);
num_keys=textscan(fid,'%d',1);
key_names=textscan(fid,'%s',num_keys{1});
fclose(fid)
for ii=1:num_keys{1}
handles.draq_d.eventlabels{ii}=key_names{1}(ii);
end
handles.draq_d.nEvPerType=zeros(1,num_keys{1});
handles.draq_d.nEventTypes=num_keys{1};
case (6)
%osampler
prompt = {'Enter the number of odors used:'};
dlg_title = 'Input for osampler';
num_lines = 1;
answer = inputdlg(prompt,dlg_title,num_lines);
num_spmult_odors=str2num(answer{1});
handles.draq_d.nsp_odors = num_spmult_odors;
handles.draq_d.nEvPerType=zeros(1,5+num_spmult_odors*3);
handles.draq_d.nEventTypes=5+num_spmult_odors*3;
handles.draq_d.eventlabels=cell(1,5+num_spmult_odors*3);
handles.draq_d.eventlabels{1}='TStart';
handles.draq_d.eventlabels{2}='OdorOn';
handles.draq_d.eventlabels{3}='Reinf';
handles.draq_d.eventlabels{4}='Hit';
handles.draq_d.eventlabels{5}='Miss';
for odNum=1:num_spmult_odors
handles.draq_d.eventlabels{5+3*(odNum-1)+1}=['Odor' num2str(odNum) '-S+'];
handles.draq_d.eventlabels{5+3*(odNum-1)+2}=['Odor' num2str(odNum) '-Hit'];
handles.draq_d.eventlabels{5+3*(odNum-1)+3}=['Odor' num2str(odNum) '-Miss'];
end
case(7)
%spm2mult
prompt = {'Enter the number of odors used as S+:'};
dlg_title = 'Input for spm2mult';
num_lines = 1;
answer = inputdlg(prompt,dlg_title,num_lines);
num_splus_odors=str2num(answer{1});
handles.draq_d.nsp_odors = num_splus_odors;
prompt = {'Enter the number of odors used as S-:'};
dlg_title = 'Input for spm2mult';
num_lines = 1;
answer = inputdlg(prompt,dlg_title,num_lines);
num_sminus_odors=str2num(answer{1});
num_spmult_odors=num_sminus_odors+num_splus_odors;
handles.draq_d.nEvPerType=zeros(1,3+num_spmult_odors*3);
handles.draq_d.nEventTypes=3+num_spmult_odors*3;
handles.draq_d.eventlabels=cell(1,3+num_spmult_odors*3);
handles.draq_d.eventlabels{1}='TStart';
handles.draq_d.eventlabels{2}='OdorOn';
handles.draq_d.eventlabels{3}='Reinf';
for odNum=1:num_splus_odors
handles.draq_d.eventlabels{3+3*(odNum-1)+1}=['Odor' num2str(odNum) '-S+'];
handles.draq_d.eventlabels{3+3*(odNum-1)+2}=['Odor' num2str(odNum) '-Hit'];
handles.draq_d.eventlabels{3+3*(odNum-1)+3}=['Odor' num2str(odNum) '-Miss'];
end
for odNum=num_splus_odors+1:num_spmult_odors
handles.draq_d.eventlabels{3+3*(odNum-1)+1}=['Odor' num2str(odNum) '-S-'];
handles.draq_d.eventlabels{3+3*(odNum-1)+2}=['Odor' num2str(odNum) '-CR'];
handles.draq_d.eventlabels{3+3*(odNum-1)+3}=['Odor' num2str(odNum) '-FA'];
end
case(8)
%lighton1
handles.draq_d.nEvPerType=zeros(1,2);
handles.draq_d.nEventTypes=2;
handles.draq_d.eventlabels=cell(1,2);
handles.draq_d.eventlabels{1}='LightOn';
handles.draq_d.eventlabels{2}='LightOn';
case (9)
%lighton5
handles.draq_d.nEvPerType=zeros(1,7);
handles.draq_d.nEventTypes=7;
handles.draq_d.eventlabels=cell(1,7);
handles.draq_d.eventlabels{1}='LightOn';
handles.draq_d.eventlabels{2}='LightOn';
handles.draq_d.eventlabels{3}='10';
handles.draq_d.eventlabels{4}='30';
handles.draq_d.eventlabels{5}='60';
handles.draq_d.eventlabels{6}='100';
handles.draq_d.eventlabels{7}='200';
case (10)
%dropcspm_conc
handles.draq_d.nEvPerType=zeros(1,23);
handles.draq_d.nEventTypes=23;
handles.draq_d.eventlabels=cell(1,23);
handles.draq_d.eventlabels{1}='TStart';
handles.draq_d.eventlabels{2}='OdorOn';
handles.draq_d.eventlabels{3}='Hit';
handles.draq_d.eventlabels{4}='HitE';
handles.draq_d.eventlabels{5}='S+';
handles.draq_d.eventlabels{6}='S+E';
handles.draq_d.eventlabels{7}='Miss';
handles.draq_d.eventlabels{8}='MissE';
handles.draq_d.eventlabels{9}='CR';
handles.draq_d.eventlabels{10}='CRE';
handles.draq_d.eventlabels{11}='S-';
handles.draq_d.eventlabels{12}='S-E';
handles.draq_d.eventlabels{13}='FA';
handles.draq_d.eventlabels{14}='FAE';
handles.draq_d.eventlabels{15}='Reinf';
handles.draq_d.eventlabels{16}='Hi Od1'; %Highest concentration
handles.draq_d.eventlabels{17}='Hi Od2';
handles.draq_d.eventlabels{18}='Hi Od3';
handles.draq_d.eventlabels{19}='Low Od4';
handles.draq_d.eventlabels{20}='Low Od5';
handles.draq_d.eventlabels{21}='Low Od6'; %Lowest concentration
handles.draq_d.eventlabels{22}='Short';
handles.draq_d.eventlabels{23}='Inter';
case (11)
%Ming laser
handles.draq_d.nEvPerType=zeros(1,3);
handles.draq_d.nEventTypes=3;
handles.draq_d.eventlabels=cell(1,3);
handles.draq_d.eventlabels{1}='Laser';
handles.draq_d.eventlabels{2}='All';
handles.draq_d.eventlabels{3}='Inter';
case (12)
%Merouann laser
handles.draq_d.nEvPerType=zeros(1,3);
handles.draq_d.nEventTypes=3;
handles.draq_d.eventlabels=cell(1,3);
handles.draq_d.eventlabels{1}='Laser';
handles.draq_d.eventlabels{2}='All';
handles.draq_d.eventlabels{3}='Inter';
end
% find events, determine the type, and assign event labels
% store event information in handles.draq_d in the arrays eventlabels (key
% for converting event string to event number), events (time stamps for
% events) and eventType (numeric event numbers corresponding to event time
% stamps)
empty_new_block=0;
empty_t_start=0;
showBits=0;
if generate_dio_bits==1
%For digging out data
sniffs=zeros(216000,100);
dio_bits=zeros(216000,100);
end
%Now get the events
reset_ii=0;
for trialNo=1:handles.draq_d.noTrials
trialNo
tic
handles.p.trialNo=trialNo;
data=drtaGetTraceData(handles);
%For digging out data
sniffs(:,trialNo)=data(:,1);
dio_bits(:,trialNo)=data(:,3);
if handles.draq_p.dgordra==1
%This is a dra file
datavec=data(:,handles.draq_p.no_spike_ch);
shiftdata=bitshift( bitand(datavec,248), -2);
else
%These are dg or rhd files
digi = data(:,handles.draq_p.no_chans);
try
shiftdata=bitand(digi,2+4+8+16);
%shiftdatans=bitand(digi,1+2+4+8);
shift_dropc_nsampler=bitand(digi,1+2+4+8+16+32);
%shift_dropc_nsampler=shiftdata(shift_dropc_nsampler<63);
catch
end
end
try
shiftdata30=shiftdata;
shiftdata(1:handles.draq_p.ActualRate*handles.p.exclude_secs)=0;
catch
end
%Exclude the trials that are off
switch handles.p.which_c_program
case (1)
%dropcnsampler
if exclude_trial(trialNo)==1
handles.p.trial_ch_processed(1:16,trialNo)=zeros(16,1);
handles.p.trial_allch_processed(trialNo)=0;
end
try
timeBefore=str2double(get(handles.timeBeforeFV,'String'));
catch
timeBefore=handles.time_before_FV;
end
firstFV=(find(shift_dropc_nsampler>0,1,'first')/handles.draq_p.ActualRate);
if firstFV<timeBefore
exclude_trial(trialNo)=1;
handles.p.trial_ch_processed(1:16,trialNo)=zeros(16,1);
handles.p.trial_allch_processed(trialNo)=0;
end
firstFVii=find(shift_dropc_nsampler>0,1,'first');
pointsleft=length(shiftdata)-(firstFVii+3*handles.draq_p.ActualRate);
if(pointsleft<1)
exclude_trial(trialNo)=1;
handles.p.trial_ch_processed(1:16,trialNo)=zeros(16,1);
handles.p.trial_allch_processed(trialNo)=0;
end
case (2)
%dropcspm
timeBefore=str2double(get(handles.timeBeforeFV,'String'));
firstFV=find(shiftdata30==6,1,'first')/handles.draq_p.ActualRate;
if firstFV<timeBefore
handles.p.trial_ch_processed(1:16,trialNo)=zeros(16,1);
handles.p.trial_allch_processed(trialNo)=0;
end
this_odor_on=find(shiftdata==18,1,'first');
pointsleft=216000-(this_odor_on+3*handles.draq_p.ActualRate);
if(pointsleft<1)
handles.p.trial_ch_processed(1:16,trialNo)=zeros(16,1);
handles.p.trial_allch_processed(trialNo)=0;
end
case (3)
%background
case (4)
%spmult
case (5)
%mspy
case (6)
%osampler
case (7)
%ospm2mult
case {8,9}
%lighton one pulse
%lighton five pulses
digidata=data(:,21);
%This is a bit safer way to get min and max
minmin_y=min(digidata);
maxmax_y=max(digidata);
max_y=mean(digidata(digidata>(minmin_y+(maxmax_y-minmin_y)/2)));
min_y=mean(digidata(digidata<(minmin_y+(maxmax_y-minmin_y)/2)));
if (max_y-min_y)>200
timeBefore=str2double(get(handles.timeBeforeFV,'String'));
firstLightOn=find(digidata>(min_y+(max_y-min_y)/2),1,'first')/handles.draq_p.ActualRate;
if firstLightOn<timeBefore
handles.p.trial_ch_processed(1:16,trialNo)=zeros(16,1);
handles.p.trial_allch_processed(trialNo)=0;
end
else
handles.p.trial_ch_processed(1:16,trialNo)=zeros(16,1);
handles.p.trial_allch_processed(trialNo)=0;
end
case (10)
%dropcspm_conc
%I fixed the problems in drta_read_Intan_RHD2000_header, this should be OK
% timeBefore=str2double(get(handles.timeBeforeFV,'String'));
% firstFV=find(shift_dropc_nsampler==1,1,'first')/handles.draq_p.ActualRate;
%
% if firstFV<timeBefore
% handles.p.trial_ch_processed(1:16,trialNo)=zeros(16,1);
% handles.p.trial_allch_processed(trialNo)=0;
% end
%
% this_odor_on=find(shift_dropc_nsampler>1,1,'first');
% pointsleft=216000-(this_odor_on+3*handles.draq_p.ActualRate);
%
% if(pointsleft<1)
% handles.p.trial_ch_processed(1:16,trialNo)=zeros(16,1);
% handles.p.trial_allch_processed(trialNo)=0;
% trialNo
% pointsleft
% end
case (11)
%Ming laser
case (12)
%Merouann laser
end
%Enter events
switch (handles.p.which_c_program)
case (1)
%dropcnsampler
if exclude_trial(trialNo)~=1
%Is this phantom?
if dropc_nsamp_odorNo(trialNo)==-1
%Yes, phantom
first_phantom_ii=find(shift_dropc_nsampler==16,1,'first');
%Phantom final valve
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=(handles.draq_d.t_trial(trialNo)+(first_phantom_ii/handles.draq_p.ActualRate)-1);
handles.draq_d.eventType(handles.draq_d.noEvents)=1;
handles.draq_d.nEvPerType(1)=handles.draq_d.nEvPerType(1)+1;
%Phantom odorOn
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=(handles.draq_d.t_trial(trialNo)+(first_phantom_ii/handles.draq_p.ActualRate));
handles.draq_d.eventType(handles.draq_d.noEvents)=2;
handles.draq_d.nEvPerType(2)=handles.draq_d.nEvPerType(2)+1;
%Phantom odor
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=(handles.draq_d.t_trial(trialNo)+(first_phantom_ii/handles.draq_p.ActualRate));
handles.draq_d.eventType(handles.draq_d.noEvents)=handles.draq_d.nEventTypes;
handles.draq_d.nEvPerType(handles.draq_d.nEventTypes)=handles.draq_d.nEvPerType(handles.draq_d.nEventTypes)+1;
else
%This is an odor
%Final valve
first_FV_ii=find(shift_dropc_nsampler==4,1,'first');
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=(handles.draq_d.t_trial(trialNo)+(first_FV_ii/handles.draq_p.ActualRate)-1);
handles.draq_d.eventType(handles.draq_d.noEvents)=1;
handles.draq_d.nEvPerType(1)=handles.draq_d.nEvPerType(1)+1;
%Phantom odorOn
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=(handles.draq_d.t_trial(trialNo)+(odor_ii(trialNo)/handles.draq_p.ActualRate));
handles.draq_d.eventType(handles.draq_d.noEvents)=2;
handles.draq_d.nEvPerType(2)=handles.draq_d.nEvPerType(2)+1;
%odor
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=(handles.draq_d.t_trial(trialNo)+(odor_ii(trialNo)/handles.draq_p.ActualRate));
handles.draq_d.eventType(handles.draq_d.noEvents)=find(dropc_nsamp_odors==dropc_nsamp_odorNo(trialNo))+2;
handles.draq_d.nEvPerType(find(dropc_nsamp_odorNo(trialNo))+2)=handles.draq_d.nEvPerType(find(dropc_nsamp_odorNo(trialNo))+2)+1;
end
end
case(2)
%dropcspm
%All the labels without the "E" suffix are assigned the time at
%odor on
if ~isempty(find(shiftdata>=1,1,'first'))
if sum(shiftdata>=1)<3*handles.draq_p.ActualRate
%This is a short
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
t_start=find(shiftdata>=1,1,'first');
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+t_start/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=16;
handles.draq_d.nEvPerType(16)=handles.draq_d.nEvPerType(16)+1;
else
%Find trial start time (event 1)
%Note: This is the same as FINAL_VALVE
if sum(shiftdata==6)>0.5*handles.draq_p.ActualRate
t_start=find(shiftdata==6,1,'first');
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+t_start/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=1;
handles.draq_d.nEvPerType(1)=handles.draq_d.nEvPerType(1)+1;
else
%It is extremely important, every single trial must have an
%accompanying t_start and odor_on
%First exclude this weird trial
handles.p.trial_ch_processed(1:16,trialNo)=zeros(16,1);
handles.p.trial_allch_processed(trialNo)=0;
%Then add it to the list
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+2;
handles.draq_d.eventType(handles.draq_d.noEvents)=1;
handles.draq_d.nEvPerType(1)=handles.draq_d.nEvPerType(1)+1;
end
%Find odor on (event 2)
found_Hit=sum(shiftdata==8)>0.05*handles.draq_p.ActualRate;
found_Miss=sum(shiftdata==10)>0.05*handles.draq_p.ActualRate;
found_CR=sum(shiftdata==12)>0.05*handles.draq_p.ActualRate;
found_FA=sum(shiftdata==14)>0.05*handles.draq_p.ActualRate;
foundEvent=found_Hit||found_Miss||found_CR||found_FA;
found_odor_on=0;
if (sum(shiftdata==18)>2.4*handles.draq_p.ActualRate)&foundEvent %Very important: each odor On has to have an event
odor_on=find(shiftdata==18,1,'first');
found_odor_on=1;
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=2;
handles.draq_d.nEvPerType(2)=handles.draq_d.nEvPerType(2)+1;
else
%It is extremely important, every single trial must have an
%accompanying t_start and odor_on
%First exclude this weird trial
handles.p.trial_ch_processed(1:16,trialNo)=zeros(16,1);
handles.p.trial_allch_processed(trialNo)=0;
%Then add it to the list
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+2;
% handles.draq_d.eventType(handles.draq_d.noEvents)=2;
handles.draq_d.eventType(handles.draq_d.noEvents)=17; %Add it as an inter
handles.draq_d.nEvPerType(2)=handles.draq_d.nEvPerType(2)+1;
end
%Find Hit (event 3), HitE (event 4), S+ (event 5) and S+E
%(event 6)
if sum(shiftdata==8)>0.05*handles.draq_p.ActualRate
hits=find(shiftdata==8,1,'first');
if generate_dio_bits==1
dio_bits(:,trialNo)=dio_bits(:,trialNo)-1;
shiftvec=bitshift( bitand(uint16(dio_bits(:,trialNo)),248), -2);
fv=shiftvec==6;
dio_bits(:,trialNo)=dio_bits(:,trialNo)+fv;
end
%Hit (event 3)
if (found_odor_on==1)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=3;
handles.draq_d.nEvPerType(3)=handles.draq_d.nEvPerType(3)+1;
end
%HitE (event 4)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+hits/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=4;
handles.draq_d.nEvPerType(4)=handles.draq_d.nEvPerType(4)+1;
%S+ (event 5)
if (found_odor_on==1)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=5;
handles.draq_d.nEvPerType(5)=handles.draq_d.nEvPerType(5)+1;
end
%S+E (event 6)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+hits/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=6;
handles.draq_d.nEvPerType(6)=handles.draq_d.nEvPerType(6)+1;
end
%Find Miss (event 7), MissE (event 8), S+ (event 5) and S+E
%(event 6)
if sum(shiftdata==10)>0.05*handles.draq_p.ActualRate
miss=find(shiftdata==10,1,'first');
if generate_dio_bits==1
dio_bits(:,trialNo)=dio_bits(:,trialNo)-1;
shiftvec=bitshift( bitand(uint16(dio_bits(:,trialNo)),248), -2);
fv=shiftvec==6;
dio_bits(:,trialNo)=dio_bits(:,trialNo)+fv;
end
%Miss (event 7)
if (found_odor_on==1)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=7;
handles.draq_d.nEvPerType(7)=handles.draq_d.nEvPerType(7)+1;
end
%MissE
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+miss/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=8;
handles.draq_d.nEvPerType(8)=handles.draq_d.nEvPerType(8)+1;
%S+ (event 5)
if (found_odor_on==1)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=5;
handles.draq_d.nEvPerType(5)=handles.draq_d.nEvPerType(5)+1;
end
%S+E (event 6)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+miss/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=6;
handles.draq_d.nEvPerType(6)=handles.draq_d.nEvPerType(6)+1;
end
%Find CR (event 9), CRE (event 10), S- (event 11) and S-E
%(event 12)
if sum(shiftdata==12)>0.05*handles.draq_p.ActualRate
crej=find(shiftdata==12,1,'first');
if generate_dio_bits==1
dio_bits(:,trialNo)=dio_bits(:,trialNo)-1;
end
%CR (event 9)
if (found_odor_on==1)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=9;
handles.draq_d.nEvPerType(9)=handles.draq_d.nEvPerType(9)+1;
end
%CRE (event 10)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+crej/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=10;
handles.draq_d.nEvPerType(10)=handles.draq_d.nEvPerType(10)+1;
%S- (event 11)
if (found_odor_on==1)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=11;
handles.draq_d.nEvPerType(11)=handles.draq_d.nEvPerType(11)+1;
end
%S-E (event 12)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+crej/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=12;
handles.draq_d.nEvPerType(12)=handles.draq_d.nEvPerType(12)+1;
end
%Find FA (event 13), FAE (event 14), S- (event 11) and S-E
%(event 12)
if sum(shiftdata==14)>0.05*handles.draq_p.ActualRate
false_alarm=find(shiftdata==14,1,'first');
if generate_dio_bits==1
dio_bits(:,trialNo)=dio_bits(:,trialNo)-1;
end
%FA (event 13)
if (found_odor_on==1)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=13;
handles.draq_d.nEvPerType(13)=handles.draq_d.nEvPerType(13)+1;
end
%FAE
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+false_alarm/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=14;
handles.draq_d.nEvPerType(14)=handles.draq_d.nEvPerType(14)+1;
%S- (event 11)
if (found_odor_on==1)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=11;
handles.draq_d.nEvPerType(11)=handles.draq_d.nEvPerType(11)+1;
end
%S-E (event 12)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+false_alarm/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=12;
handles.draq_d.nEvPerType(12)=handles.draq_d.nEvPerType(12)+1;
end
%Find reinforcement (event 15)
if sum(shiftdata==16)>0.02*handles.draq_p.ActualRate
reinf=find(shiftdata==16,1,'first');
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+reinf/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=15;
handles.draq_d.nEvPerType(15)=handles.draq_d.nEvPerType(15)+1;
end
%Find new block
blockNoIndx=find(shiftdata>19,1,'first');
if ~isempty(blockNoIndx)
if ~isempty(t_start)
%block_per_index=block_per_index+1;
handles.draq_d.block_per_trial(trialNo)=(shiftdata(blockNoIndx)-18)/2;
end
else
empty_new_block=empty_new_block+1
end
end
else
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+(length(shiftdata)/3)/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=17;
handles.draq_d.nEvPerType(17)=handles.draq_d.nEvPerType(17)+1;
end
trialNo
case (3)
%backgound
for ii=2:2:18
t_start=find(shiftdata==ii,1,'first');
if ~isempty(t_start)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+t_start/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=ii/2;
handles.draq_d.nEvPerType(ii/2)=handles.draq_d.nEvPerType(ii/2)+1;
end
end
case (4)
%spmult
%Find trial start time (event 1)
%Note: This is the same as FINAL_VALVE
t_start=find(shiftdata==6,1,'first');
if ~isempty(t_start)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+t_start/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=1;
handles.draq_d.nEvPerType(1)=handles.draq_d.nEvPerType(1)+1;
else
%It is extremely important, every single trial must have an
%accompanying t_start and odor_on
%First exclude this weird trial
handles.p.trial_ch_processed(1:16,trialNo)=zeros(16,1);
handles.p.trial_allch_processed(trialNo)=0;
%Then add this one
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+2;
handles.draq_d.eventType(handles.draq_d.noEvents)=1;
handles.draq_d.nEvPerType(1)=handles.draq_d.nEvPerType(1)+1;
end
%Find odor on (event 2)
odor_on=find(shiftdata==18,1,'first');
found_odor_on=0;
if ~isempty(odor_on)
found_odor_on=1;
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=2;
handles.draq_d.nEvPerType(2)=handles.draq_d.nEvPerType(2)+1;
else
%It is extremely important, every single trial must have an
%accompanying t_start and odor_on
%First exclude this weird trial
handles.p.trial_ch_processed(1:16,trialNo)=zeros(16,1);
handles.p.trial_allch_processed(trialNo)=0;
%Then add this one
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+2;
handles.draq_d.eventType(handles.draq_d.noEvents)=2;
handles.draq_d.nEvPerType(1)=handles.draq_d.nEvPerType(2)+1;
end
%Find Hit and S+
hits=find(shiftdata==8,1,'first');
if ~isempty(hits)
%Determine the odor number
for ii=20:2:64
t_odor=find(shiftdata==ii,1,'first');
if ~isempty(t_odor)
odNum=(ii-18)/2;
break;
end
end
%Hit (event number 8 and number 9+3*(odNum-1)+2)
if (found_odor_on==1)
% add a Hit event (event 8)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=8;
handles.draq_d.nEvPerType(8)=handles.draq_d.nEvPerType(8)+1;
% add an OdorNoX-Hit event (event 9+3*(odNum-1)+2)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=9+3*(odNum-1)+2;
handles.draq_d.nEvPerType(9+3*(odNum-1)+2)=handles.draq_d.nEvPerType(9+3*(odNum-1)+2)+1;
end
%S+ (event 7 and event 9+3*(odNum-1)+1)
if (found_odor_on==1)
% add an S+ event (event 7)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=7;
handles.draq_d.nEvPerType(7)=handles.draq_d.nEvPerType(7)+1;
% add an OdorX-S+ event for this odor (event 9+3*(odNum-1)+1)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=9+3*(odNum-1)+1;
handles.draq_d.nEvPerType(9+3*(odNum-1)+1)=handles.draq_d.nEvPerType(9+3*(odNum-1)+1)+1;
end
end
%Find Miss and S+
miss=find(shiftdata==10,1,'first');
if ~isempty(miss)
%Determine the odor number
for ii=20:2:64
t_odor=find(shiftdata==ii,1,'first');
if ~isempty(t_odor)
odNum=(ii-18)/2;
break;
end
end
%Miss (event 9+3*(odNum-1)+3)
if (found_odor_on==1)
% add a miss (event 9)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=9;
handles.draq_d.nEvPerType(9)=handles.draq_d.nEvPerType(9)+1;
% add an OdorNoX-Miss event (event number 9+3*(odNum-1)+3)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=9+3*(odNum-1)+3;
handles.draq_d.nEvPerType(9+3*(odNum-1)+3)=handles.draq_d.nEvPerType(9+3*(odNum-1)+3)+1;
end
%S+ (event 7 and event 9+3*(odNum-1)+1)
if (found_odor_on==1)
% add an S+ event (event 7)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=7;
handles.draq_d.nEvPerType(7)=handles.draq_d.nEvPerType(7)+1;
% add an OdorX-S+ event (event number 9+3*(odNum-1)+1)
handles.draq_d.noEvents=handles.draq_d.noEvents+1;
handles.draq_d.events(handles.draq_d.noEvents)=handles.draq_d.t_trial(trialNo)+odor_on/handles.draq_p.ActualRate;
handles.draq_d.eventType(handles.draq_d.noEvents)=9+3*(odNum-1)+1;
handles.draq_d.nEvPerType(9+3*(odNum-1)+1)=handles.draq_d.nEvPerType(9+3*(odNum-1)+1)+1;