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DESCRIPTION
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Package: scmetadata
Title: Monitoring metadata availability of scRNA-seq data in GEO
Version: 1.0.0
Authors@R:c(
person("Rui", "Fu", , "[email protected]", role = c("aut", "cre")),
person("Kent", "Riemondy", , "[email protected]", role = "aut"),
person("Sidhant", "Puntambekar", , "[email protected]", role = "ctb")
)
Description: Using NCBI e-utilities and R packages to query and visualize
the problematic absence of cell metadata in most GEO single cell
sequencing data series.
License: MIT + file LICENSE
Depends:
R (>= 4.0)
Imports:
ArrayExpress,
BiocStyle,
cowplot,
data.table,
easyPubMed,
GEOquery,
googlesheets4,
here,
httr,
pbmcapply,
rcrossref,
scholar,
tidyverse
Suggests:
covr,
roxygen2,
testthat
VignetteBuilder:
knitr
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Config/Needs/website:
pkgdown,
rnabioco/rbitemplate