From d3728ccf5180e2cf301335d879092976794ddde1 Mon Sep 17 00:00:00 2001
From: Jay Hesselberth <jay.hesselberth@gmail.com>
Date: Mon, 19 Aug 2024 06:35:55 -0600
Subject: [PATCH] Address CRAN NOTE about link anchors

---
 DESCRIPTION          | 2 +-
 NEWS.md              | 2 ++
 R/bed_map.r          | 2 +-
 R/bed_partition.r    | 2 +-
 man/bed_map.Rd       | 2 +-
 man/bed_partition.Rd | 2 +-
 6 files changed, 7 insertions(+), 5 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 6962b887..48df0320 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -56,7 +56,7 @@ VignetteBuilder:
     knitr
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 Config/Needs/website:
     r-lib/pkgdown,
     rnabioco/rbitemplate
diff --git a/NEWS.md b/NEWS.md
index 57761619..122f1ea3 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,5 +1,7 @@
 # valr (development version)
 
+* Address NOTE on CRAN about Rd link targets.
+
 # valr 0.8.1
 
 * Make vdiffr dependency optional during package testing. 
diff --git a/R/bed_map.r b/R/bed_map.r
index 1a98aca6..2437eea4 100644
--- a/R/bed_map.r
+++ b/R/bed_map.r
@@ -1,6 +1,6 @@
 #' Calculate summaries from overlapping intervals.
 #'
-#' Apply functions like [min()] and [count()] to intersecting intervals.
+#' Apply functions like [min()] and [max()] to intersecting intervals.
 #' [bed_map()] uses [bed_intersect()] to identify intersecting intervals, so
 #' output columns will be suffixed with `.x` and `.y`. Expressions that refer to
 #' input columns from `x` and `y` columns must take these suffixes into account.
diff --git a/R/bed_partition.r b/R/bed_partition.r
index e6d9b1a2..75210ba1 100644
--- a/R/bed_partition.r
+++ b/R/bed_partition.r
@@ -3,7 +3,7 @@
 #' Convert a set of intervals into elemental intervals that contain each start
 #' and end position in the set.
 #'
-#' Summary operations, such as [min()] or [count()] can be performed
+#' Summary operations, such as [min()] or [max()] can be performed
 #' on elemental intervals by specifying name-value pairs.
 #'
 #' This function is useful for calculating summaries across overlapping intervals
diff --git a/man/bed_map.Rd b/man/bed_map.Rd
index 8b2e1e93..dcbebb2c 100644
--- a/man/bed_map.Rd
+++ b/man/bed_map.Rd
@@ -32,7 +32,7 @@ values(.data, sep = ",")
 \link{ivl_df}
 }
 \description{
-Apply functions like \code{\link[=min]{min()}} and \code{\link[=count]{count()}} to intersecting intervals.
+Apply functions like \code{\link[=min]{min()}} and \code{\link[=max]{max()}} to intersecting intervals.
 \code{\link[=bed_map]{bed_map()}} uses \code{\link[=bed_intersect]{bed_intersect()}} to identify intersecting intervals, so
 output columns will be suffixed with \code{.x} and \code{.y}. Expressions that refer to
 input columns from \code{x} and \code{y} columns must take these suffixes into account.
diff --git a/man/bed_partition.Rd b/man/bed_partition.Rd
index ac1d0687..0b8c5cfd 100644
--- a/man/bed_partition.Rd
+++ b/man/bed_partition.Rd
@@ -19,7 +19,7 @@ Convert a set of intervals into elemental intervals that contain each start
 and end position in the set.
 }
 \details{
-Summary operations, such as \code{\link[=min]{min()}} or \code{\link[=count]{count()}} can be performed
+Summary operations, such as \code{\link[=min]{min()}} or \code{\link[=max]{max()}} can be performed
 on elemental intervals by specifying name-value pairs.
 
 This function is useful for calculating summaries across overlapping intervals