From e86ca096abcb1e81dec6ce91b65663fa5a39f78b Mon Sep 17 00:00:00 2001 From: Carl Boettiger Date: Thu, 20 Dec 2018 20:03:00 -0800 Subject: [PATCH] 3.4.4 --- X11/Dockerfile | 2 +- r-ver/Dockerfile | 7 ++----- rstudio/Dockerfile | 4 ++-- tidyverse/Dockerfile | 5 +++-- verse/Dockerfile | 4 ++-- 5 files changed, 10 insertions(+), 12 deletions(-) diff --git a/X11/Dockerfile b/X11/Dockerfile index 1c212c2..e32dc70 100644 --- a/X11/Dockerfile +++ b/X11/Dockerfile @@ -1,4 +1,4 @@ -FROM rocker/r-ver:3.4.3 +FROM rocker/r-ver:3.4.4 ## R's X11 runtime dependencies RUN apt-get update \ diff --git a/r-ver/Dockerfile b/r-ver/Dockerfile index 682ee6a..0180ec1 100644 --- a/r-ver/Dockerfile +++ b/r-ver/Dockerfile @@ -7,8 +7,8 @@ LABEL org.label-schema.license="GPL-2.0" \ ARG R_VERSION ARG BUILD_DATE -ENV BUILD_DATE ${BUILD_DATE:-2018-03-15} -ENV R_VERSION=${R_VERSION:-3.4.3} \ +ENV BUILD_DATE ${BUILD_DATE:-2018-04-23} +ENV R_VERSION=${R_VERSION:-3.4.4} \ LC_ALL=en_US.UTF-8 \ LANG=en_US.UTF-8 \ TERM=xterm @@ -121,9 +121,6 @@ RUN apt-get update \ && ln -s /usr/local/lib/R/site-library/littler/examples/install2.r /usr/local/bin/install2.r \ && ln -s /usr/local/lib/R/site-library/littler/examples/installGithub.r /usr/local/bin/installGithub.r \ && ln -s /usr/local/lib/R/site-library/littler/bin/r /usr/local/bin/r \ - ## TEMPORARY WORKAROUND to get more robust error handling for install2.r prior to littler update - && curl -O /usr/local/bin/install2.r https://github.com/eddelbuettel/littler/raw/master/inst/examples/install2.r \ - && chmod +x /usr/local/bin/install2.r \ ## Clean up from R source install && cd / \ && rm -rf /tmp/* \ diff --git a/rstudio/Dockerfile b/rstudio/Dockerfile index 2cea7ec..b0068dc 100644 --- a/rstudio/Dockerfile +++ b/rstudio/Dockerfile @@ -1,8 +1,8 @@ -FROM rocker/r-ver:3.4.3 +FROM rocker/r-ver:3.4.4 ARG RSTUDIO_VERSION ## Comment the next line to use the latest RStudio Server version by default -ENV RSTUDIO_VERSION=${RSTUDIO_VERSION:-1.1.442} +ENV RSTUDIO_VERSION=${RSTUDIO_VERSION:-1.1.447} ENV PATH=/usr/lib/rstudio-server/bin:$PATH ## Download and install RStudio server & dependencies diff --git a/tidyverse/Dockerfile b/tidyverse/Dockerfile index e9fb555..183b33c 100644 --- a/tidyverse/Dockerfile +++ b/tidyverse/Dockerfile @@ -1,13 +1,14 @@ -FROM rocker/rstudio:3.4.3 +FROM rocker/rstudio:3.4.4 RUN apt-get update -qq && apt-get -y --no-install-recommends install \ libxml2-dev \ libcairo2-dev \ - libsqlite-dev \ + libsqlite3-dev \ libmariadbd-dev \ libmariadb-client-lgpl-dev \ libpq-dev \ libssh2-1-dev \ + unixodbc-dev \ && R -e "source('https://bioconductor.org/biocLite.R')" \ && install2.r --error \ --deps TRUE \ diff --git a/verse/Dockerfile b/verse/Dockerfile index 9eb4df5..1bf61b7 100644 --- a/verse/Dockerfile +++ b/verse/Dockerfile @@ -1,4 +1,4 @@ -FROM rocker/tidyverse:3.4.3 +FROM rocker/tidyverse:3.4.4 ENV PATH=$PATH:/opt/TinyTeX/bin/x86_64-linux/ ## Add LaTeX, rticles and bookdown support @@ -38,7 +38,7 @@ RUN wget "https://travis-bin.yihui.name/texlive-local.deb" \ && rm -rf /var/lib/apt/lists/ \ ## Use tinytex for LaTeX installation && install2.r --error tinytex \ -## Admin-based install of TinyTeX: + ## Admin-based install of TinyTeX: && wget -qO- \ "https://github.com/yihui/tinytex/raw/master/tools/install-unx.sh" | \ sh -s - --admin --no-path \