-
Notifications
You must be signed in to change notification settings - Fork 3
/
Copy pathmeson.build
113 lines (99 loc) · 3.88 KB
/
meson.build
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
project('_glmnet',
['c', 'fortran'],
version : '0.2',
meson_version: '>= 1.2.3',
default_options : [
'warning_level=1',
'buildtype=release'
])
numpy_nodepr_api = '-DNPY_NO_DEPRECATED_API=NPY_1_23_API_VERSION'
python_sources = [
'harmonization/__init__.py',
'harmonization/config.py',
'harmonization/dictionary.py',
'harmonization/elastic_net.py',
'harmonization/recon.py',
'harmonization/scripts.py',
'harmonization/solver.py',
]
test_sources = [
'harmonization/tests/test_config.py',
'harmonization/tests/test_scripts.py',
'harmonization/tests/datasets/config.yaml',
'harmonization/tests/datasets/config_upscale.yaml',
'harmonization/tests/datasets/subj1/dwi.nii.gz',
'harmonization/tests/datasets/subj1/dwi_brain_mask.nii.gz',
'harmonization/tests/datasets/subj1/dwi.bvals',
'harmonization/tests/datasets/subj1/dwi.bvecs',
'harmonization/tests/datasets/subj2/dwi.nii.gz',
'harmonization/tests/datasets/subj2/dwi_brain_mask.nii.gz',
'harmonization/tests/datasets/subj2/dwi.bvals',
'harmonization/tests/datasets/subj2/dwi.bvecs',
'harmonization/tests/datasets_bids/config_bids.yaml',
'harmonization/tests/datasets_bids/config_upscale_bids.yaml',
'harmonization/tests/datasets_bids/subj1-bids/dwi/subj1-dwi.nii.gz',
'harmonization/tests/datasets_bids/subj1-bids/dwi/subj1-dwi_brain_mask.nii.gz',
'harmonization/tests/datasets_bids/subj1-bids/dwi/subj1-dwi.bvals',
'harmonization/tests/datasets_bids/subj1-bids/dwi/subj1-dwi.bvecs',
'harmonization/tests/datasets_bids/subj2-bids/dwi/subj2-dwi.nii.gz',
'harmonization/tests/datasets_bids/subj2-bids/dwi/subj2-dwi_brain_mask.nii.gz',
'harmonization/tests/datasets_bids/subj2-bids/dwi/subj2-dwi.bvals',
'harmonization/tests/datasets_bids/subj2-bids/dwi/subj2-dwi.bvecs',
]
fflags = ['-fdefault-real-8',
'-ffixed-form',
'-fPIC',
'-flto',
'-O2',
'-funroll-loops',
'-ffast-math',
'-shared',
]
fc = meson.get_compiler('fortran')
add_project_arguments(fflags, language: 'fortran')
py = import('python').find_installation(pure: false)
py_dep = py.dependency()
incdir_numpy = run_command(py,
['-c', 'import os; os.chdir(".."); import numpy; print(numpy.get_include())'],
check : true
).stdout().strip()
incdir_f2py = run_command(py,
['-c', 'import os; os.chdir(".."); import numpy.f2py; print(numpy.f2py.get_include())'],
check : true
).stdout().strip()
inc_np = include_directories(incdir_numpy)
np_dep = declare_dependency(include_directories: inc_np,
compile_args: numpy_nodepr_api)
incdir_f2py = incdir_numpy / '..' / '..' / 'f2py' / 'src'
inc_f2py = include_directories(incdir_f2py)
fortranobject_c = incdir_f2py / 'fortranobject.c'
inc_np = include_directories(incdir_numpy, incdir_f2py)
# gh-25000
quadmath_dep = fc.find_library('quadmath', required: false)
py.extension_module('_glmnet',
[
'''glmnet/glmnet.f''',
'''glmnet/_glmnetmodule.c''',
'''glmnet/_glmnet-f2pywrappers.f''',
fortranobject_c
],
include_directories: [
inc_np,
],
dependencies : [
py_dep,
quadmath_dep,
],
install : true,
subdir: 'harmonization')
py.install_sources(
python_sources,
pure: false, # Will be installed next to binaries
subdir: 'harmonization' # Folder relative to site-packages to install to
)
py.install_sources(
test_sources,
pure: false, # Will be installed next to binaries
# subdir: 'harmonization/tests', # Folder relative to site-packages to install to
preserve_path: true
)