RunAzimuth offline with homolog.table path reference

[KalinNonchev]

Hi,

I would like to use RunAzimuth offline/ without internet connection. For this, I have downloaded already the ref.Rds and idx.annoy files I need. However, here

azimuth/R/azimuth.R

Line 103 in 243ee5d

homolog.table = 'https://seurat.nygenome.org/azimuth/references/homologs.rds'

the homologs link is hardcoded and I don't see an option to specify a local copy of the homolog.table file from RunAzimuth. Could you help me with this?

Thank you in advance!

Best,

[KalinNonchev]

Hi, I created a pull request regarding this issue: #218

[KalinNonchev]

@rsatija @saketkc @andrewwbutler @keller-mark could you look into this when you have time? Thank you!

[KalinNonchev]

@Gesmira could you look into this as well? I think it should work. Thank you

[yzh37545]

Same issue here