Human Bone Marrow Reference

[yasharw]

Hi all,

First of all, thanks for building this web tool! It's been a useful resource for my lab.

I'm mapping my single cell datasets to several of your hematopoietic reference datasets. I used the web tool to download the azimuth analysis scripts and was able to download the reference dataset for "Human - PBMC" through a web link. However, there doesn't seem to be a similar web link for the "Human - Bone Marrow" reference dataset.

I saw the paper references that you included on the azimuth page for the bone marrow reference dataset. However, I was wondering whether there was a pre-compiled reference for the BM dataset like the one for the PBMC dataset.

Thank you!
Will

[MjelleLab]

Hi,
Did you figure out this?

[mmfalco]

I was having the same problem and I found this reference set from SeuratData. Not sure if its the same one used in Azimuth but it was useful for me:

library(SeuratData)
InstallData("bmcite")
ref <- LoadData(ds = "bmcite")