diff --git a/R/azimuth.R b/R/azimuth.R index dddb288..54100ad 100644 --- a/R/azimuth.R +++ b/R/azimuth.R @@ -31,7 +31,8 @@ RunAzimuth.Seurat <- function( assay = NULL, k.weight = 50, n.trees = 20, - mapping.score.k = 100, + mapping.score.k = 100, + homolog.table = 'https://seurat.nygenome.org/azimuth/references/homologs.rds', ... ) { CheckDots(...) @@ -100,7 +101,7 @@ RunAzimuth.Seurat <- function( query <- ConvertGeneNames( object = query, reference.names = rownames(x = reference), - homolog.table = 'https://seurat.nygenome.org/azimuth/references/homologs.rds' + homolog.table = homolog.table ) # Calculate nCount_RNA and nFeature_RNA if the query does not