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Error: make_cell_attr - log_umi contains NA, NaN, or infinite value in SCTransform
#200
opened Nov 6, 2024 by
unikill066
updated Jan 28, 2025
Concern regarding method use for Xenium data
#203
opened Dec 11, 2024 by
LPotter21
updated Jan 13, 2025
Error in make_cell_attr(umi, cell_attr, latent_var, batch_var, latent_var_nonreg, : cell attribute "log_umi" contains NA, NaN, or infinite value
#204
opened Dec 29, 2024 by
Jingyi-only
updated Dec 29, 2024
Error: cannot allocate vector of size 80.7 Gb
#202
opened Nov 26, 2024 by
mylenaortiz
updated Nov 27, 2024
Regressing out vars.to.regress takes a very long time for samples with >10k cells
#195
opened Jun 17, 2024 by
professor-sagittarius
updated Jun 19, 2024
Error running on cellbender adjusted counts
#187
opened Apr 10, 2024 by
yesitsjess
updated Jun 19, 2024
SCTransform vars.to.regress Contrasts can be applied only to factors with 2 or more levels
#193
opened May 8, 2024 by
UKECat
updated May 8, 2024
Error in sort.int(x, na.last = na.last, decreasing = decreasing, ...) : 'x' must be atomic / sctransform
#180
opened Jan 25, 2024 by
pstrangw
updated Jan 26, 2024
Error in make_cell_attr(umi, cell_attr, latent_var, batch_var, latent_var_nonreg, : cell attributes cannot contain any NA, NaN, or infinite values
#86
opened Dec 16, 2020 by
connorhknight
updated Nov 10, 2023
batch_var doesn't work with vst.flavor = 'v2'
#126
opened Feb 10, 2022 by
cnk113
updated May 17, 2023
Why the difference in sample order affects the sctransform results
#150
opened Oct 24, 2022 by
yuxuanChen777
updated Apr 5, 2023
Question about Reproducing a Plot in the Paper Introducing the SCTransform (Hafemeister, C., & Satija, R. #1999)
#136
opened Apr 26, 2022 by
mcap91
updated Oct 11, 2022
batch_var is not corrected in sctransform::correct
#125
opened Jan 18, 2022 by
dg520
updated Jan 18, 2022
Question: Is it possible to reverse the scaling done by vst()?
more-information-needed
#122
opened Jan 6, 2022 by
TeodoraTockovska
updated Jan 7, 2022
'node stack overflow' when using 'IntegrateData'!
#119
opened Dec 16, 2021 by
amssljc
updated Dec 17, 2021
Selection of the number of cells used for the NB regression in SCTransform
#118
opened Dec 13, 2021 by
BiotechPedro
updated Dec 13, 2021
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