Skip to content

Issues: satijalab/sctransform

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort

Issues list

Concern regarding method use for Xenium data
#203 opened Dec 11, 2024 by LPotter21 updated Jan 13, 2025
Error: cannot allocate vector of size 80.7 Gb
#202 opened Nov 26, 2024 by mylenaortiz updated Nov 27, 2024
Error running on cellbender adjusted counts
#187 opened Apr 10, 2024 by yesitsjess updated Jun 19, 2024
Integration & Subset
#194 opened Jun 13, 2024 by galaxyeee updated Jun 13, 2024
explanation for the algorithm
#184 opened Mar 16, 2024 by BenxiaHu updated Mar 16, 2024
When Sctransform should not be used?
#104 opened May 7, 2021 by ElyasMo updated Aug 7, 2023
batch_var doesn't work with vst.flavor = 'v2'
#126 opened Feb 10, 2022 by cnk113 updated May 17, 2023
Inquiry about the batch correction model
#162 opened Apr 4, 2023 by jcho23 updated Apr 4, 2023
Disk-based data
#63 opened Aug 14, 2020 by willtownes updated Jan 23, 2023
Velocyto
#96 opened Feb 22, 2021 by nasiegel88 updated Dec 6, 2022
Consistency across computers/environments
#68 opened Sep 24, 2020 by Baboon61 updated Sep 27, 2022
Update on non-UMI data
#94 opened Feb 5, 2021 by JuliaP138 updated Mar 18, 2022
batch_var is not corrected in sctransform::correct
#125 opened Jan 18, 2022 by dg520 updated Jan 18, 2022
'node stack overflow' when using 'IntegrateData'!
#119 opened Dec 16, 2021 by amssljc updated Dec 17, 2021
Error when running SCtransform
#117 opened Nov 30, 2021 by KaWingLee9 updated Nov 30, 2021
ProTip! Mix and match filters to narrow down what you’re looking for.