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sedml.xml
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<?xml version="1.0" encoding="UTF-8"?>
<package name="SEDML" fullname="SEDML" number="100" offset="100000" version="1" required="false" customCopyright="sedml_copyright.txt">
<language name="SedML" baseClass="SedBase" documentClass="SedDocument" prefix="Sed" libraryName="LibSEDML" annotationElementName="Annotation" topLevelElementName="Annotation" isPackage="false" uses_ASTNode="true" uses_XMLNode="true">
<library_version major="1" minor="0" revision="0"/>
<language_versions>
<version level="1" version="1" namespace="http://sed-ml.org/"/>
</language_versions>
<dependencies>
<dependency library_name="libnuml" prefix="NUML"/>
</dependencies>
</language>
<versions>
<pkgVersion level="1" version="1" pkg_version="1">
<elements>
<element name="SedDocument" typeCode="SEDML_DOCUMENT" hasListOf="false" hasChildren="true" hasMath="false" childrenOverwriteElementName="false" baseClass="SedBase" abstract="false" elementName="sedML">
<attributes>
<attribute name="level" required="true" type="unsigned int" abstract="false"/>
<attribute name="version" required="true" type="unsigned int" abstract="false"/>
<attribute name="dataDescription" required="false" type="lo_element" element="DataDescription" abstract="false"/>
<attribute name="model" required="false" type="lo_element" element="Model" abstract="false"/>
<attribute name="simulation" required="false" type="lo_element" element="Simulation" abstract="true"/>
<attribute name="task" required="false" type="lo_element" element="AbstractTask" xmlName="task" abstract="true"/>
<attribute name="dataGenerator" required="false" type="lo_element" element="DataGenerator" abstract="false"/>
<attribute name="output" required="false" type="lo_element" element="Output" abstract="true"/>
<attribute name="style" required="false" type="lo_element" element="Style" abstract="false"/>
</attributes>
</element>
<element name="Model" typeCode="SEDML_MODEL" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" baseClass="SedBase" abstract="false">
<attributes>
<attribute name="id" required="true" type="SId" abstract="false"/>
<attribute name="name" required="false" type="string" abstract="false"/>
<attribute name="language" required="false" type="string" abstract="false"/>
<attribute name="source" required="true" type="string" abstract="false"/>
<attribute name="change" required="false" type="lo_element" element="Change" abstract="true"/>
</attributes>
</element>
<element name="Change" typeCode="SEDML_CHANGE" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" baseClass="SedBase" abstract="true">
<attributes>
<attribute name="target" required="true" type="string" abstract="false"/>
</attributes>
<concretes>
<concrete name="addXML" element="AddXML" minNumChildren="0" maxNumChildren="0"/>
<concrete name="changeXML" element="ChangeXML" minNumChildren="0" maxNumChildren="0"/>
<concrete name="removeXML" element="RemoveXML" minNumChildren="0" maxNumChildren="0"/>
<concrete name="changeAttribute" element="ChangeAttribute" minNumChildren="0" maxNumChildren="0"/>
<concrete name="computeChange" element="ComputeChange" minNumChildren="0" maxNumChildren="0"/>
</concretes>
</element>
<element name="AddXML" typeCode="SEDML_CHANGE_ADDXML" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Change" abstract="false">
<attributes>
<attribute name="newXML" required="true" type="element" element="XMLNode*" abstract="false"/>
</attributes>
</element>
<element name="ChangeAttribute" typeCode="SEDML_CHANGE_ATTRIBUTE" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Change" abstract="false">
<attributes>
<attribute name="newValue" required="true" type="string" abstract="false"/>
</attributes>
</element>
<element name="Variable" typeCode="SEDML_VARIABLE" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" baseClass="SedBase" abstract="true" elementName="variable">
<attributes>
<attribute name="id" required="true" type="SId" abstract="false"/>
<attribute name="name" required="false" type="string" abstract="false"/>
<attribute name="symbol" required="false" type="string" abstract="false"/>
<attribute name="target" required="false" type="string" abstract="false"/>
<attribute name="taskReference" required="false" type="SIdRef" element="Task" abstract="false"/>
<attribute name="modelReference" required="false" type="SIdRef" element="Model" abstract="false"/>
<attribute name="remainingDimension" required="false" type="lo_element" element="RemainingDimension" abstract="false"/>
</attributes>
<concretes>
<concrete name="remainingDimension" element="RemainingDimension" minNumChildren="0" maxNumChildren="0"/>
<concrete name="variable" element="Variable" minNumChildren="0" maxNumChildren="0"/>
<concrete name="dependentVariable" element="DependentVariable" minNumChildren="0" maxNumChildren="0"/>
</concretes>
</element>
<element name="Parameter" typeCode="SEDML_PARAMETER" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" baseClass="SedBase" abstract="false" elementName="parameter">
<attributes>
<attribute name="id" required="true" type="SId" abstract="false"/>
<attribute name="name" required="false" type="string" abstract="false"/>
<attribute name="value" required="true" type="double" abstract="false"/>
</attributes>
</element>
<element name="Simulation" typeCode="SEDML_SIMULATION" hasListOf="true" hasChildren="true" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" baseClass="SedBase" abstract="true" elementName="simulation" listOfName="listOfSimulations">
<attributes>
<attribute name="id" required="true" type="SId" abstract="false"/>
<attribute name="name" required="false" type="string" abstract="false"/>
<attribute name="algorithm" required="true" type="element" element="Algorithm" abstract="false"/>
</attributes>
<concretes>
<concrete name="uniformTimeCourse" element="UniformTimeCourse" minNumChildren="0" maxNumChildren="0"/>
<concrete name="oneStep" element="OneStep" minNumChildren="0" maxNumChildren="0"/>
<concrete name="steadyState" element="SteadyState" minNumChildren="0" maxNumChildren="0"/>
</concretes>
</element>
<element name="UniformTimeCourse" typeCode="SEDML_SIMULATION_UNIFORMTIMECOURSE" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Simulation" abstract="false" elementName="uniformTimeCourse">
<attributes>
<attribute name="initialTime" required="true" type="double" abstract="false"/>
<attribute name="outputStartTime" required="true" type="double" abstract="false"/>
<attribute name="outputEndTime" required="true" type="double" abstract="false"/>
<attribute name="numberOfPoints" required="false" type="int" abstract="false"/>
<attribute name="numberOfSteps" required="false" type="int" abstract="false"/>
</attributes>
</element>
<element name="Algorithm" typeCode="SEDML_SIMULATION_ALGORITHM" hasListOf="false" hasChildren="true" hasMath="false" childrenOverwriteElementName="false" baseClass="SedBase" abstract="false" elementName="algorithm" additionalDecls="algorithm_headers.h" additionalDefs="algorithm_code.cpp">
<attributes>
<attribute name="kisaoID" required="true" type="string" abstract="false"/>
<attribute name="algorithmParameter" required="false" type="lo_element" element="AlgorithmParameter" abstract="false"/>
</attributes>
</element>
<element name="AbstractTask" typeCode="SEDML_SEDML_ABSTRACTTASK" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" abstract="true" listOfName="listOfTasks" listOfClassName="SedListOfTasks">
<attributes>
<attribute name="id" required="true" type="SId" abstract="false"/>
<attribute name="name" required="false" type="string" abstract="false"/>
</attributes>
<concretes>
<concrete name="task" element="Task" minNumChildren="0" maxNumChildren="0"/>
<concrete name="repeatedTask" element="RepeatedTask" minNumChildren="0" maxNumChildren="0"/>
<concrete name="parameterEstimationTask" element="ParameterEstimationTask" minNumChildren="0" maxNumChildren="0"/>
<concrete name="simpleRepeatedTask" element="SimpleRepeatedTask" minNumChildren="0" maxNumChildren="0"/>
</concretes>
</element>
<element name="Task" typeCode="SEDML_TASK" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="AbstractTask" abstract="false" elementName="task">
<attributes>
<attribute name="modelReference" required="false" type="SIdRef" element="Model" abstract="false"/>
<attribute name="simulationReference" required="false" type="SIdRef" element="Simulation" abstract="false"/>
</attributes>
<concretes>
<concrete name="task" element="Task" minNumChildren="0" maxNumChildren="0"/>
<concrete name="simpleRepeatedTask" element="SimpleRepeatedTask" minNumChildren="0" maxNumChildren="0"/>
</concretes>
</element>
<element name="DataGenerator" typeCode="SEDML_DATAGENERATOR" hasListOf="true" hasChildren="true" hasMath="true" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" baseClass="SedBase" abstract="false" elementName="dataGenerator">
<attributes>
<attribute name="id" required="true" type="SId" abstract="false"/>
<attribute name="name" required="false" type="string" abstract="false"/>
<attribute name="variable" required="false" type="lo_element" element="Variable" abstract="false"/>
<attribute name="parameter" required="false" type="lo_element" element="Parameter" abstract="false"/>
<attribute name="math" required="false" type="element" element="ASTNode*" abstract="false"/>
</attributes>
</element>
<element name="Output" typeCode="SEDML_OUTPUT" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" baseClass="SedBase" abstract="true" listOfName="listOfOutputs">
<attributes>
<attribute name="id" required="false" type="SId" abstract="false"/>
<attribute name="name" required="false" type="string" abstract="false"/>
</attributes>
<concretes>
<concrete name="report" element="Report" minNumChildren="0" maxNumChildren="0"/>
<concrete name="plot2D" element="Plot2D" minNumChildren="0" maxNumChildren="0"/>
<concrete name="plot3D" element="Plot3D" minNumChildren="0" maxNumChildren="0"/>
<concrete name="figure" element="Figure" minNumChildren="0" maxNumChildren="0"/>
</concretes>
</element>
<element name="Plot" typeCode="SEDML_OUTPUT_PLOT" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Output" abstract="true">
<attributes>
<attribute name="legend" required="false" type="bool" abstract="false"/>
<attribute name="height" required="false" type="double" abstract="false"/>
<attribute name="width" required="false" type="double" abstract="false"/>
<attribute name="xAxis" required="false" type="element" element="Axis" xmlName="xAxis" abstract="false"/>
<attribute name="yAxis" required="false" type="element" element="Axis" xmlName="yAxis" abstract="false"/>
</attributes>
<concretes>
<concrete name="plot2D" element="Plot2D" minNumChildren="0" maxNumChildren="0"/>
<concrete name="plot3D" element="Plot3D" minNumChildren="0" maxNumChildren="0"/>
</concretes>
</element>
<element name="Plot2D" typeCode="SEDML_OUTPUT_PLOT2D" hasListOf="false" hasChildren="true" hasMath="false" childrenOverwriteElementName="false" baseClass="Plot" abstract="false" elementName="plot2D">
<attributes>
<attribute name="curve" required="false" type="lo_element" element="AbstractCurve" abstract="true"/>
<attribute name="rightYAxis" required="false" type="element" element="Axis" xmlName="rightYAxis" abstract="false"/>
</attributes>
</element>
<element name="Plot3D" typeCode="SEDML_OUTPUT_PLOT3D" hasListOf="false" hasChildren="true" hasMath="false" childrenOverwriteElementName="false" baseClass="Plot" abstract="false" elementName="plot3D">
<attributes>
<attribute name="surface" required="false" type="lo_element" element="Surface" abstract="false"/>
<attribute name="zAxis" required="false" type="element" element="Axis" xmlName="zAxis" abstract="false"/>
</attributes>
</element>
<element name="AbstractCurve" typeCode="SEDML_ABSTRACTCURVE" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" abstract="true" listOfName="listOfCurves" listOfClassName="SedListOfCurves">
<attributes>
<attribute name="id" required="false" type="SId" abstract="false"/>
<attribute name="name" required="false" type="string" abstract="false"/>
<attribute name="logX" required="false" type="bool" abstract="false"/>
<attribute name="order" required="false" type="integer" abstract="false"/>
<attribute name="style" required="false" type="SIdRef" element="Style" abstract="false"/>
<attribute name="yAxis" required="false" type="string" abstract="false"/>
<attribute name="xDataReference" required="false" type="SIdRef" element="DataReference" abstract="false"/>
</attributes>
<concretes>
<concrete name="curve" element="Curve" minNumChildren="0" maxNumChildren="0"/>
<concrete name="shadedArea" element="ShadedArea" minNumChildren="0" maxNumChildren="0"/>
</concretes>
</element>
<element name="Curve" typeCode="SEDML_OUTPUT_CURVE" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="AbstractCurve" abstract="false" elementName="curve">
<attributes>
<attribute name="logY" required="false" type="bool" abstract="false"/>
<attribute name="yDataReference" required="true" type="SIdRef" element="DataGenerator" abstract="false"/>
<attribute name="type" required="false" type="enum" element="CurveType" abstract="false"/>
<attribute name="xErrorUpper" required="false" type="SIdRef" element="DataGenerator" abstract="false"/>
<attribute name="xErrorLower" required="false" type="SIdRef" element="DataGenerator" abstract="false"/>
<attribute name="yErrorUpper" required="false" type="SIdRef" element="DataGenerator" abstract="false"/>
<attribute name="yErrorLower" required="false" type="SIdRef" element="DataGenerator" abstract="false"/>
</attributes>
<concretes>
<concrete name="curve" element="Curve" minNumChildren="0" maxNumChildren="0"/>
<concrete name="surface" element="Surface" minNumChildren="0" maxNumChildren="0"/>
</concretes>
</element>
<element name="Surface" typeCode="SEDML_OUTPUT_SURFACE" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" abstract="false" elementName="surface">
<attributes>
<attribute name="id" required="false" type="SId" abstract="false"/>
<attribute name="name" required="false" type="string" abstract="false"/>
<attribute name="xDataReference" required="false" type="SIdRef" element="DataGenerator" abstract="false"/>
<attribute name="yDataReference" required="false" type="SIdRef" element="DataGenerator" abstract="false"/>
<attribute name="zDataReference" required="true" type="SIdRef" element="DataGenerator" abstract="false"/>
<attribute name="type" required="false" type="enum" element="SurfaceType" abstract="false"/>
<attribute name="style" required="false" type="SIdRef" element="Style" abstract="false"/>
<attribute name="logX" required="false" type="bool" abstract="false"/>
<attribute name="logY" required="false" type="bool" abstract="false"/>
<attribute name="logZ" required="false" type="bool" abstract="false"/>
<attribute name="order" required="false" type="int" abstract="false"/>
</attributes>
</element>
<element name="DataSet" typeCode="SEDML_OUTPUT_DATASET" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" baseClass="SedBase" abstract="false" elementName="dataSet">
<attributes>
<attribute name="id" required="true" type="SId" abstract="false"/>
<attribute name="label" required="true" type="string" abstract="false"/>
<attribute name="name" required="false" type="string" abstract="false"/>
<attribute name="dataReference" required="true" type="SIdRef" element="DataGenerator" abstract="false"/>
</attributes>
</element>
<element name="Report" typeCode="SEDML_OUTPUT_REPORT" hasListOf="false" hasChildren="true" hasMath="false" childrenOverwriteElementName="false" baseClass="Output" abstract="false" elementName="report">
<attributes>
<attribute name="dataSet" required="false" type="lo_element" element="DataSet" abstract="false"/>
</attributes>
</element>
<element name="AlgorithmParameter" typeCode="SEDML_SIMULATION_ALGORITHM_PARAMETER" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" baseClass="SedBase" abstract="false" elementName="algorithmParameter" additionalDecls="algorithmparameter_headers.h" additionalDefs="algorithmparameter_code.cpp">
<attributes>
<attribute name="kisaoID" required="true" type="string" abstract="false"/>
<attribute name="value" required="true" type="string" abstract="false"/>
<attribute name="algorithmParameter" required="false" type="lo_element" element="AlgorithmParameter" abstract="false"/>
</attributes>
</element>
<element name="Range" typeCode="SEDML_RANGE" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" baseClass="SedBase" abstract="true">
<attributes>
<attribute name="id" required="true" type="SId" abstract="false"/>
</attributes>
<concretes>
<concrete name="uniformRange" element="UniformRange" minNumChildren="0" maxNumChildren="0"/>
<concrete name="vectorRange" element="VectorRange" minNumChildren="0" maxNumChildren="0"/>
<concrete name="functionalRange" element="FunctionalRange" minNumChildren="0" maxNumChildren="0"/>
<concrete name="dataRange" element="DataRange" minNumChildren="0" maxNumChildren="0"/>
</concretes>
</element>
<element name="ChangeXML" typeCode="SEDML_CHANGE_CHANGEXML" hasListOf="false" hasChildren="true" hasMath="false" childrenOverwriteElementName="false" baseClass="Change" abstract="false" elementName="changeXML">
<attributes>
<attribute name="newXML" required="false" type="element" element="XMLNode*" abstract="false"/>
</attributes>
</element>
<element name="RemoveXML" typeCode="SEDML_CHANGE_REMOVEXML" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Change" abstract="false" elementName="removeXML"/>
<element name="SetValue" typeCode="SEDML_TASK_SETVALUE" hasListOf="true" hasChildren="true" hasMath="true" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" baseClass="SedBase" abstract="false">
<attributes>
<attribute name="modelReference" required="true" type="SIdRef" element="Model" abstract="false"/>
<attribute name="symbol" required="false" type="string" abstract="false"/>
<attribute name="target" required="false" type="string" abstract="false"/>
<attribute name="range" required="false" type="SIdRef" element="Range" abstract="false"/>
<attribute name="math" required="false" type="element" element="ASTNode*" abstract="false"/>
</attributes>
</element>
<element name="UniformRange" typeCode="SEDML_RANGE_UNIFORMRANGE" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Range" abstract="false" elementName="uniformRange">
<attributes>
<attribute name="start" required="true" type="double" abstract="false"/>
<attribute name="end" required="true" type="double" abstract="false"/>
<attribute name="numberOfPoints" required="true" type="int" abstract="false"/>
<attribute name="type" required="true" type="string" abstract="false"/>
</attributes>
</element>
<element name="VectorRange" typeCode="SEDML_RANGE_VECTORRANGE" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Range" abstract="false" elementName="vectorRange">
<attributes>
<attribute name="value" required="false" type="vector" element="double" abstract="false"/>
</attributes>
</element>
<element name="FunctionalRange" typeCode="SEDML_RANGE_FUNCTIONALRANGE" hasListOf="false" hasChildren="true" hasMath="true" childrenOverwriteElementName="false" baseClass="Range" abstract="false" elementName="functionalRange">
<attributes>
<attribute name="range" required="true" type="SIdRef" element="Range" abstract="false"/>
<attribute name="variable" required="false" type="lo_element" element="Variable" abstract="false"/>
<attribute name="parameter" required="false" type="lo_element" element="Parameter" abstract="false"/>
<attribute name="math" required="false" type="element" element="ASTNode*" abstract="false"/>
</attributes>
</element>
<element name="SubTask" typeCode="SEDML_TASK_SUBTASK" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" baseClass="SedBase" abstract="false">
<attributes>
<attribute name="order" required="true" type="int" abstract="false"/>
<attribute name="task" required="true" type="SIdRef" element="AbstractTask" abstract="false"/>
</attributes>
</element>
<element name="OneStep" typeCode="SEDML_SIMULATION_ONESTEP" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Simulation" abstract="false" elementName="oneStep">
<attributes>
<attribute name="step" required="true" type="double" abstract="false"/>
</attributes>
</element>
<element name="SteadyState" typeCode="SEDML_SIMULATION_STEADYSTATE" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Simulation" abstract="false" elementName="steadyState"/>
<element name="RepeatedTask" typeCode="SEDML_TASK_REPEATEDTASK" hasListOf="false" hasChildren="true" hasMath="false" childrenOverwriteElementName="false" baseClass="AbstractTask" abstract="false">
<attributes>
<attribute name="rangeId" required="false" type="SIdRef" element="Range" xmlName="range" abstract="false"/>
<attribute name="resetModel" required="false" type="bool" abstract="false"/>
<attribute name="range" required="false" type="lo_element" element="Range" abstract="true"/>
<attribute name="taskChange" required="false" type="lo_element" element="SetValue" abstract="false"/>
<attribute name="subTask" required="false" type="lo_element" element="SubTask" abstract="false"/>
</attributes>
</element>
<element name="ComputeChange" typeCode="SEDML_CHANGE_COMPUTECHANGE" hasListOf="false" hasChildren="true" hasMath="true" childrenOverwriteElementName="false" baseClass="Change" abstract="false">
<attributes>
<attribute name="math" required="false" type="element" element="ASTNode*" abstract="false"/>
<attribute name="variable" required="false" type="lo_element" element="Variable" abstract="false"/>
<attribute name="parameter" required="false" type="lo_element" element="Parameter" abstract="false"/>
</attributes>
</element>
<element name="DataDescription" typeCode="SEDML_DATA_DESCRIPTION" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" abstract="false">
<attributes>
<attribute name="id" required="true" type="SId" abstract="false"/>
<attribute name="name" required="false" type="string" abstract="false"/>
<attribute name="format" required="false" type="string" abstract="false"/>
<attribute name="source" required="false" type="string" abstract="false"/>
<attribute name="dimensionDescription" required="false" type="element" element="DimensionDescription" abstract="false"/>
<attribute name="dataSource" required="false" type="lo_element" element="DataSource" abstract="false"/>
</attributes>
</element>
<element name="DataSource" typeCode="SEDML_DATA_SOURCE" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" abstract="false">
<attributes>
<attribute name="id" required="true" type="SId" abstract="false"/>
<attribute name="name" required="false" type="string" abstract="false"/>
<attribute name="indexSet" required="false" type="SIdRef" abstract="false"/>
<attribute name="slice" required="false" type="lo_element" element="Slice" abstract="false"/>
</attributes>
</element>
<element name="Slice" typeCode="SEDML_DATA_SLICE" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" abstract="false">
<attributes>
<attribute name="reference" required="true" type="SIdRef" abstract="false"/>
<attribute name="value" required="true" type="string" abstract="false"/>
<attribute name="index" required="false" type="SIdRef" abstract="false"/>
<attribute name="startIndex" required="false" type="int" abstract="false"/>
<attribute name="endIndex" required="false" type="int" abstract="false"/>
</attributes>
</element>
<element name="ParameterEstimationTask" typeCode="SEDML_TASK_PARAMETER_ESTIMATION" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="AbstractTask" abstract="false">
<attributes>
<attribute name="algorithm" required="true" type="element" element="Algorithm" abstract="false"/>
<attribute name="objective" required="true" type="element" element="Objective" abstract="true"/>
<attribute name="adjustableParameter" required="true" type="lo_element" element="AdjustableParameter" abstract="false"/>
<attribute name="fitExperiment" required="true" type="lo_element" element="FitExperiment" abstract="false"/>
</attributes>
</element>
<element name="Objective" typeCode="SEDML_OBJECTIVE" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" abstract="true">
<concretes>
<concrete name="leastSquareObjectiveFunction" element="LeastSquareObjectiveFunction" minNumChildren="0" maxNumChildren="0"/>
</concretes>
</element>
<element name="LeastSquareObjectiveFunction" typeCode="SEDML_LEAST_SQUARE_OBJECTIVE" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Objective" abstract="false"/>
<element name="AdjustableParameter" typeCode="SEDML_ADJUSTABLE_PARAMETER" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" abstract="false">
<attributes>
<attribute name="initialValue" required="false" type="double" abstract="false"/>
<attribute name="bounds" required="true" type="element" element="Bounds" abstract="false"/>
<attribute name="experimentSet" required="false" type="lo_element" element="ExperimentRef" abstract="false"/>
<attribute name="modelReference" required="false" type="SIdRef" element="Model" abstract="false"/>
<attribute name="target" required="false" type="string" abstract="false"/>
</attributes>
</element>
<element name="ExperimentRef" typeCode="SEDML_EXPERIMENT_REF" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" abstract="false">
<attributes>
<attribute name="experimentId" required="false" type="SIdRef" element="FitExperiment" abstract="false"/>
</attributes>
</element>
<element name="FitExperiment" typeCode="SEDML_FIT_EXPERIMENT" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" abstract="false">
<attributes>
<attribute name="id" required="false" type="SId" abstract="false"/>
<attribute name="type" required="false" type="enum" element="ExperimentType" abstract="false"/>
<attribute name="algorithm" required="false" type="element" element="Algorithm" abstract="false"/>
<attribute name="fitMapping" required="false" type="lo_element" element="FitMapping" abstract="false"/>
</attributes>
</element>
<element name="FitMapping" typeCode="SEDML_FITMAPPING" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" abstract="false">
<attributes>
<attribute name="dataSource" required="true" type="SIdRef" element="DataSource" abstract="false"/>
<attribute name="target" required="true" type="SIdRef" element="DataGenerator" abstract="false"/>
<attribute name="type" required="true" type="enum" element="MappingType" abstract="false"/>
<attribute name="weight" required="false" type="double" abstract="false"/>
<attribute name="pointWeight" required="false" type="SIdRef" element="DataSource" abstract="false"/>
</attributes>
</element>
<element name="Bounds" typeCode="SEDML_BOUNDS" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" abstract="false">
<attributes>
<attribute name="lowerBound" required="false" type="double" abstract="false"/>
<attribute name="upperBound" required="false" type="double" abstract="false"/>
<attribute name="scale" required="false" type="enum" element="ScaleType" abstract="false"/>
</attributes>
</element>
<element name="Figure" typeCode="SEDML_FIGURE" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Output" abstract="false">
<attributes>
<attribute name="numRows" required="false" type="integer" abstract="false"/>
<attribute name="numCols" required="false" type="integer" abstract="false"/>
<attribute name="subPlot" required="false" type="lo_element" element="SubPlot" abstract="false"/>
</attributes>
</element>
<element name="SubPlot" typeCode="SEDML_SUBPLOT" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" abstract="false">
<attributes>
<attribute name="plot" required="true" type="SIdRef" element="Plot" abstract="false"/>
<attribute name="row" required="true" type="integer" abstract="false"/>
<attribute name="col" required="true" type="integer" abstract="false"/>
<attribute name="rowSpan" required="false" type="integer" abstract="false"/>
<attribute name="colSpan" required="false" type="integer" abstract="false"/>
</attributes>
</element>
<element name="Axis" typeCode="SEDML_AXIS" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="true" abstract="false">
<attributes>
<attribute name="type" required="true" type="enum" element="AxisType" abstract="false"/>
<attribute name="min" required="false" type="double" abstract="false"/>
<attribute name="max" required="false" type="double" abstract="false"/>
<attribute name="grid" required="false" type="bool" abstract="false"/>
<attribute name="style" required="false" type="SIdRef" element="Style" abstract="false"/>
</attributes>
</element>
<element name="Style" typeCode="SEDML_STYLE" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" abstract="false">
<attributes>
<attribute name="id" required="true" type="SId" abstract="false"/>
<attribute name="baseStyle" required="false" type="SIdRef" element="Style" abstract="false"/>
<attribute name="lineStyle" required="false" type="element" element="Line" xmlName="lineStyle" abstract="false"/>
<attribute name="markerStyle" required="false" type="element" element="Marker" xmlName="markerStyle" abstract="false"/>
<attribute name="fillStyle" required="false" type="element" element="Fill" xmlName="fillStyle" abstract="false"/>
</attributes>
</element>
<element name="Line" typeCode="SEDML_LINE" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" abstract="false">
<attributes>
<attribute name="style" required="false" type="enum" element="LineType" abstract="false"/>
<attribute name="color" required="false" type="string" abstract="false"/>
<attribute name="thickness" required="false" type="double" abstract="false"/>
</attributes>
</element>
<element name="Marker" typeCode="SEDML_MARKER" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" abstract="false">
<attributes>
<attribute name="size" required="false" type="double" abstract="false"/>
<attribute name="style" required="false" type="enum" element="MarkerType" abstract="false"/>
<attribute name="fill" required="false" type="string" abstract="false"/>
<attribute name="lineColor" required="false" type="string" abstract="false"/>
<attribute name="lineThickness" required="false" type="double" abstract="false"/>
</attributes>
</element>
<element name="Fill" typeCode="SEDML_FILL" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" abstract="false">
<attributes>
<attribute name="color" required="true" type="string" abstract="false"/>
<attribute name="secondColor" required="false" type="string" abstract="false"/>
</attributes>
</element>
<element name="DependentVariable" typeCode="SEDML_DEPENDENTVARIABLE" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Variable" abstract="false">
<attributes>
<attribute name="term" required="true" type="string" abstract="false"/>
<attribute name="target2" required="false" type="string" abstract="false"/>
<attribute name="symbol2" required="false" type="string" abstract="false"/>
</attributes>
</element>
<element name="RemainingDimension" typeCode="SEDML_REMAININGDIMENSION" hasListOf="true" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" minNumListOfChildren="0" maxNumListOfChildren="0" abstract="false">
<attributes>
<attribute name="target" required="false" type="SIdRef" abstract="false"/>
<attribute name="dimensionTarget" required="false" type="SIdRef" abstract="false"/>
</attributes>
</element>
<element name="DataRange" typeCode="SEDML_DATA_RANGE" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Range" abstract="false">
<attributes>
<attribute name="sourceRef" required="true" type="SIdRef" abstract="false"/>
</attributes>
</element>
<element name="SimpleRepeatedTask" typeCode="SEDML_TASK_SIMPLEREPEATEDTASK" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Task" abstract="false">
<attributes>
<attribute name="resetModel" required="true" type="bool" abstract="false"/>
<attribute name="numRepeats" required="true" type="integer" abstract="false"/>
</attributes>
</element>
<element name="ShadedArea" typeCode="SEDML_SHADEDAREA" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="AbstractCurve" abstract="false">
<attributes>
<attribute name="yDataReferenceFrom" required="true" type="SIdRef" element="DataGenerator" abstract="false"/>
<attribute name="yDataReferenceTo" required="true" type="SIdRef" element="DataGenerator" abstract="false"/>
</attributes>
</element>
<element name="ParameterEstimationResultPlot" typeCode="SEDML_PARAMETERESTIMATIONRESULTPLOT" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Plot" abstract="false">
<attributes>
<attribute name="taskRef" required="true" type="SIdRef" element="Task" abstract="false"/>
</attributes>
</element>
<element name="WaterfallPlot" typeCode="SEDML_WATERFALLPLOT" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Plot" abstract="false">
<attributes>
<attribute name="taskRef" required="true" type="SIdRef" element="Task" abstract="false"/>
</attributes>
</element>
<element name="ParameterEstimationReport" typeCode="SEDML_PARAMETERESTIMATIONREPORT" hasListOf="false" hasChildren="false" hasMath="false" childrenOverwriteElementName="false" baseClass="Output" abstract="false">
<attributes>
<attribute name="taskRef" required="true" type="SIdRef" element="Task" abstract="false"/>
</attributes>
</element>
</elements>
<enums>
<enum name="MappingType">
<enumValues>
<enumValue name="SEDML_MAPPINGTYPE_TIME" value="time"/>
<enumValue name="SEDML_MAPPINGTYPE_EXPERIMENTALCONDITION" value="experimentalCondition"/>
<enumValue name="SEDML_MAPPINGTYPE_OBSERVABLE" value="observable"/>
</enumValues>
</enum>
<enum name="AxisType">
<enumValues>
<enumValue name="SEDML_AXISTYPE_LINEAR" value="linear"/>
<enumValue name="SEDML_AXISTYPE_LOG10" value="log10"/>
</enumValues>
</enum>
<enum name="LineType">
<enumValues>
<enumValue name="SEDML_LINETYPE_NONE" value="none"/>
<enumValue name="SEDML_LINETYPE_SOLID" value="solid"/>
<enumValue name="SEDML_LINETYPE_DASH" value="dash"/>
<enumValue name="SEDML_LINETYPE_DOT" value="dot"/>
<enumValue name="SEDML_LINETYPE_DASHDOT" value="dashDot"/>
<enumValue name="SEDML_LINETYPE_DASHDOTDOT" value="dashDotDot"/>
</enumValues>
</enum>
<enum name="MarkerType">
<enumValues>
<enumValue name="SEDML_MARKERTYPE_NONE" value="none"/>
<enumValue name="SEDML_MARKERTYPE_SQUARE" value="square"/>
<enumValue name="SEDML_MARKERTYPE_CIRCLE" value="circle"/>
<enumValue name="SEDML_MARKERTYPE_DIAMOND" value="diamond"/>
<enumValue name="SEDML_MARKERTYPE_XCROSS" value="xCross"/>
<enumValue name="SEDML_MARKERTYPE_PLUS" value="plus"/>
<enumValue name="SEDML_MARKERTYPE_STAR" value="star"/>
<enumValue name="SEDML_MARKERTYPE_TRIANGLEUP" value="triangleUp"/>
<enumValue name="SEDML_MARKERTYPE_TRIANGLEDOWN" value="triangleDown"/>
<enumValue name="SEDML_MARKERTYPE_TRIANGLELEFT" value="triangleLeft"/>
<enumValue name="SEDML_MARKERTYPE_TRIANGLERIGHT" value="triangleRight"/>
<enumValue name="SEDML_MARKERTYPE_HDASH" value="hDash"/>
<enumValue name="SEDML_MARKERTYPE_VDASH" value="vDash"/>
</enumValues>
</enum>
<enum name="CurveType">
<enumValues>
<enumValue name="SEDML_CURVETYPE_POINTS" value="points"/>
<enumValue name="SEDML_CURVETYPE_BAR" value="bar"/>
<enumValue name="SEDML_CURVETYPE_BARSTACKED" value="barStacked"/>
<enumValue name="SEDML_CURVETYPE_HORIZONTALBAR" value="horizontalBar"/>
<enumValue name="SEDML_CURVETYPE_HORIZONTALBARSTACKED" value="horizontalBarStacked"/>
</enumValues>
</enum>
<enum name="SurfaceType">
<enumValues>
<enumValue name="SEDML_SURFACETYPE_PARAMETRICCURVE" value="parametricCurve"/>
<enumValue name="SEDML_SURFACETYPE_SURFACEMESH" value="surfaceMesh"/>
<enumValue name="SEDML_SURFACETYPE_SURFACECONTOUR" value="surfaceContour"/>
<enumValue name="SEDML_SURFACETYPE_CONTOUR" value="contour"/>
<enumValue name="SEDML_SURFACETYPE_HEATMAP" value="heatMap"/>
<enumValue name="SEDML_SURFACETYPE_STACKEDCURVES" value="stackedCurves"/>
<enumValue name="SEDML_SURFACETYPE_BAR" value="bar"/>
</enumValues>
</enum>
<enum name="ExperimentType">
<enumValues>
<enumValue name="SEDML_EXPERIMENTTYPE_STEADYSTATE" value="SteadyState"/>
<enumValue name="SEDML_EXPERIMENTTYPE_TIMECOURSE" value="TimeCourse"/>
</enumValues>
</enum>
<enum name="ScaleType">
<enumValues>
<enumValue name="SEDML_SCALETYPE_LIN" value="lin"/>
<enumValue name="SEDML_SCALETYPE_LOG" value="log"/>
<enumValue name="SEDML_SCALETYPE_LOG10" value="log10"/>
</enumValues>
</enum>
</enums>
<mappings>
<mapping name="DimensionDescription" package="numl"/>
<mapping name="SedBase"/>
</mappings>
</pkgVersion>
</versions>
</package>