.dockstore.yml

version: 1.2
workflows:
  - name: download_aspera
    subclass: WDL
    primaryDescriptorPath: /wdls/download_aspera.wdl
  - name: T2T_alignment
    subclass: WDL
    primaryDescriptorPath: /wdls/t2t_alignment.wdl
  - name: haplotype_calling_chrom
    subclass: WDL
    primaryDescriptorPath: /wdls/haplotype_calling_chrom.wdl
  - name: joint_calling_interval
    subclass: WDL
    primaryDescriptorPath: /wdls/joint_calling_interval.wdl
  - name: concat_vcfs_chromosome
    subclass: WDL
    primaryDescriptorPath: /wdls/t2t_concat_vcfs_chromosome.wdl
  - name: generate_genomics_db
    subclass: WDL
    primaryDescriptorPath: /wdls/t2t_genomics_db.wdl
  - name: variant_recalibration
    subclass: WDL
    primaryDescriptorPath: /wdls/variant_recalibration.wdl
  - name: combine_mv_tables
    subclass: WDL
    primaryDescriptorPath: /wdls/combine_mv_tables.wdl
  - name: mendelian_analysis
    subclass: WDL
    primaryDescriptorPath: /wdls/mendelian_analysis.wdl
  - name: local_ancestry_analysis
    subclass: WDL
    primaryDescriptorPath: /wdls/local_ancestry_analysis.wdl
  - name: bcftools_stats_region
    subclass: WDL
    primaryDescriptorPath: /wdls/bcftools_stats_region.wdl
  - name: bcftools_stats_samples
    subclass: WDL
    primaryDescriptorPath: /wdls/bcftools_stats_samples.wdl
  - name: bcftools_stats
    subclass: WDL
    primaryDescriptorPath: /wdls/bcftools_stats.wdl
  - name: bcftools_view_subset
    subclass: WDL
    primaryDescriptorPath: /wdls/bcftools_view_subset.wdl
  - name: bgzip_bcftools_index
    subclass: WDL
    primaryDescriptorPath: /wdls/bgzip_bcftools_index.wdl
  - name: bgzip_tabix
    subclass: WDL
    primaryDescriptorPath: /wdls/bgzip_tabix.wdl
  - name: concatenate_files
    subclass: WDL
    primaryDescriptorPath: /wdls/concatenate_files.wdl
  - name: filter_ac_variants
    subclass: WDL
    primaryDescriptorPath: /wdls/filter_ac_variants.wdl
  - name: filter_af_variants
    subclass: WDL
    primaryDescriptorPath: /wdls/filter_af_variants.wdl
  - name: get_pass_records
    subclass: WDL
    primaryDescriptorPath: /wdls/get_pass_records.wdl
  - name: gunzip
    subclass: WDL
    primaryDescriptorPath: /wdls/gunzip.wdl
  - name: liftover
    subclass: WDL
    primaryDescriptorPath: /wdls/liftover.wdl
  - name: local_ancestry_analysis
    subclass: WDL
    primaryDescriptorPath: /wdls/local_ancestry_analysis.wdl
  - name: subset_vcf_with_bed
    subclass: WDL
    primaryDescriptorPath: /wdls/subset_vcf_with_bed.wdl
  - name: tabix
    subclass: WDL
    primaryDescriptorPath: /wdls/tabix.wdl