diff --git a/.github/dependabot.yml b/.github/dependabot.yml
index 6fddca0..6c4b369 100644
--- a/.github/dependabot.yml
+++ b/.github/dependabot.yml
@@ -5,3 +5,7 @@ updates:
     directory: "/"
     schedule:
       interval: "weekly"
+    groups:
+      actions:
+        patterns:
+          - "*"
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 517a4a9..c95a60a 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -5,7 +5,7 @@ ci:
 
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v4.4.0
+  rev: v4.5.0
   hooks:
   - id: check-added-large-files
   - id: check-case-conflict
@@ -21,31 +21,15 @@ repos:
   - id: name-tests-test
     args: ["--pytest-test-first"]
 
-- repo: https://github.com/asottile/setup-cfg-fmt
-  rev: v2.4.0
-  hooks:
-  - id: setup-cfg-fmt
-    args: [--include-version-classifiers, --max-py-version=3.11]
-
-- repo: https://github.com/psf/black-pre-commit-mirror
-  rev: 23.9.1
-  hooks:
-  - id: black
-
-- repo: https://github.com/cheshirekow/cmake-format-precommit
-  rev: v0.6.13
-  hooks:
-  - id: cmake-format
-    additional_dependencies: [pyyaml]
-
 - repo: https://github.com/astral-sh/ruff-pre-commit
-  rev: v0.0.291
+  rev: v0.1.15
   hooks:
   - id: ruff
     args: ["--fix", "--show-fixes"]
+  - id: ruff-format
 
 - repo: https://github.com/codespell-project/codespell
-  rev: v2.2.5
+  rev: v2.2.6
   hooks:
   - id: codespell
     args: ["-L", "ue,subjet,parms,fo,numer,thre,gaus"]
@@ -59,11 +43,6 @@ repos:
     exclude: .pre-commit-config.yaml
 
 - repo: https://github.com/shellcheck-py/shellcheck-py
-  rev: "v0.9.0.5"
+  rev: "v0.9.0.6"
   hooks:
   - id: shellcheck
-
-- repo: https://github.com/asottile/pyupgrade
-  rev: v3.13.0
-  hooks:
-  - id: pyupgrade
diff --git a/docs/source/conf.py b/docs/source/conf.py
index 6e33f91..d54d90a 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -10,7 +10,7 @@
 import os
 import sys
 
-sys.path.insert(0, os.path.abspath("../../odapt/"))  # noqa: PTH100
+sys.path.insert(0, os.path.abspath("../../odapt/"))
 
 
 project = "odapt"
diff --git a/docs/source/prepare_docstrings.py b/docs/source/prepare_docstrings.py
index b8a9be8..cf86d5c 100644
--- a/docs/source/prepare_docstrings.py
+++ b/docs/source/prepare_docstrings.py
@@ -27,7 +27,7 @@
 ]
 
 latest_commit = (
-    subprocess.run(["git", "rev-parse", "HEAD"], stdout=subprocess.PIPE)
+    subprocess.run(["git", "rev-parse", "HEAD"], stdout=subprocess.PIPE, check=False)
     .stdout.decode("utf-8")
     .strip()
 )
@@ -37,9 +37,7 @@
     :caption: Main Interface
     :hidden:
 
-{}""".format(
-        "".join(f"    {x}\n" for x in common)
-    )
+{}""".format("".join(f"    {x}\n" for x in common))
 )
 toctree = open("odapt.toctree", "w")
 toctree.write(
@@ -71,9 +69,7 @@ def handle_module(modulename, module):
 {1}
 
 .. automodule:: {0}
-""".format(
-        modulename, "=" * len(modulename)
-    )
+""".format(modulename, "=" * len(modulename))
     ensure(modulename + ".rst", content)
     if toctree2 is None:
         toctree.write("    " + modulename + " (module) <" + modulename + ">\n")
@@ -201,13 +197,9 @@ def prettymro(c):
     +-{}-+
     | **Inheritance order:** {}|
     +={}=+
-    | """.format(
-            "-" * longest_cell, " " * (longest_cell - 22), "=" * longest_cell
-        )
+    | """.format("-" * longest_cell, " " * (longest_cell - 22), "=" * longest_cell)
         inheritance_footer = """ |
-    +-{}-+""".format(
-            "-" * longest_cell
-        )
+    +-{}-+""".format("-" * longest_cell)
         inheritance = [x + " " * (longest_cell - len(x)) for x in inheritance]
         inheritance_sep = """ |
     | """
@@ -266,9 +258,7 @@ def handle_function(functionname, cls):
 Defined in {} on {}.
 
 .. autofunction:: {}
-""".format(
-        title, "=" * len(title), link, linelink, functionname
-    )
+""".format(title, "=" * len(title), link, linelink, functionname)
     ensure(functionname + ".rst", content)
     if upfront or toctree2 is None:
         if functionname not in common:
@@ -288,9 +278,7 @@ def handle_function(functionname, cls):
     :caption: {}
     :hidden:
 
-""".format(
-                modulename.replace("odapt.", "")
-            )
+""".format(modulename.replace("odapt.", ""))
         )
 
     handle_module(modulename, module)
diff --git a/pyproject.toml b/pyproject.toml
index 8b6bfbe..dbae84b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -65,8 +65,6 @@ source = "vcs"
 [tool.hatch.build.hooks.vcs]
 version-file = "src/odapt/_version.py"
 
-[tool.hatch.metadata.hooks.vcs]
-
 [tool.pytest.ini_options]
 minversion = "6.0"
 addopts = ["-ra", "--showlocals", "--strict-markers", "--strict-config"]
@@ -93,7 +91,6 @@ files = ["src", "tests"]
 python_version = "3.8"
 warn_unused_configs = true
 strict = true
-show_error_codes = true
 enable_error_code = ["ignore-without-code", "redundant-expr", "truthy-bool"]
 warn_unreachable = true
 disallow_untyped_defs = false
@@ -106,15 +103,17 @@ disallow_incomplete_defs = true
 
 
 [tool.ruff]
-select = [
-  "E", "F", "W", # flake8
+src = ["src"]
+
+
+[tool.ruff.lint]
+extend-select = [
   "B",           # flake8-bugbear
   "I",           # isort
   "ARG",         # flake8-unused-arguments
   "C4",          # flake8-comprehensions
   "EM",          # flake8-errmsg
   "ICN",         # flake8-import-conventions
-  "ISC",         # flake8-implicit-str-concat
   "G",           # flake8-logging-format
   "PGH",         # pygrep-hooks
   "PIE",         # flake8-pie
@@ -131,27 +130,18 @@ select = [
   "NPY",         # NumPy specific rules
   "PD",          # pandas-vet
 ]
-extend-ignore = [
-  "PLR",    # Design related pylint codes
-  "E501",   # Line too long
-]
-src = ["src"]
-unfixable = [
-  "T20",  # Removes print statements
-  "F841", # Removes unused variables
+ignore = [
+  "PLR09",       # Too many ...
+  "PLR2004",     # Magic value used in comparison
 ]
-exclude = [
-  "tests/*.py",
-  "src/odapt/__init__.py",
-  "docs/*.py"]
 flake8-unused-arguments.ignore-variadic-names = true
 isort.required-imports = ["from __future__ import annotations"]
-# Uncomment if using a _compat.typing backport
-# typing-modules = ["odapt._compat.typing"]
 
-[tool.ruff.per-file-ignores]
-"tests/**" = ["T20"]
+[tool.ruff.lint.per-file-ignores]
+"tests/**" = ["T20", "SIM118"]
+"docs/**" = ["SIM", "PTH", "B023", "RET"]
 "noxfile.py" = ["T20"]
+"tests/test_copy_root.py" = ["F821", "F841"]
 
 
 [tool.pylint]
diff --git a/src/odapt/__init__.py b/src/odapt/__init__.py
index 1cc0a9b..4cf996e 100644
--- a/src/odapt/__init__.py
+++ b/src/odapt/__init__.py
@@ -6,11 +6,17 @@
 from __future__ import annotations
 
 from odapt._version import __version__
+from odapt.copy_root import copy_root
+from odapt.histogram_adding import hadd
+from odapt.merge import hadd_and_merge
+from odapt.parquet_to_root import parquet_to_root
+from odapt.root_to_parquet import root_to_parquet
 
-from odapt.histogram_adding import hadd  # noqa: F401
-from odapt.merge import hadd_and_merge  # noqa: F401
-from odapt.copy_root import copy_root  # noqa: F401
-from odapt.parquet_to_root import parquet_to_root  # noqa: F401
-from odapt.root_to_parquet import root_to_parquet  # noqa: F401
-
-__all__ = ["__version__"]
+__all__ = [
+    "__version__",
+    "hadd",
+    "hadd_and_merge",
+    "copy_root",
+    "parquet_to_root",
+    "root_to_parquet",
+]
diff --git a/tests/test_copy_root.py b/tests/test_copy_root.py
index ac5c603..c9eed20 100644
--- a/tests/test_copy_root.py
+++ b/tests/test_copy_root.py
@@ -1,7 +1,10 @@
-import uproot
-import odapt as od
+from __future__ import annotations
+
 import awkward as ak
 import pytest
+import uproot
+
+import odapt as od
 
 skhep_testdata = pytest.importorskip("skhep_testdata")
 
@@ -35,7 +38,7 @@ def test_drop_branch():
     assert "Jet_Px" not in file["events"]
 
     for key in original["events"].keys():
-        if key != "MClepton_py" and key != "Jet_Px":
+        if key not in {"MClepton_py", "Jet_Px"}:
             assert key in file["events"].keys()
             assert ak.all(
                 file["events"][key].array() == original["events"][key].array()
diff --git a/tests/test_parquet_to_root.py b/tests/test_parquet_to_root.py
index d8f6233..4f7f3e4 100644
--- a/tests/test_parquet_to_root.py
+++ b/tests/test_parquet_to_root.py
@@ -1,7 +1,10 @@
-import uproot
-from odapt.parquet_to_root import parquet_to_root
+from __future__ import annotations
+
 import awkward as ak
 import pytest
+import uproot
+
+from odapt.parquet_to_root import parquet_to_root
 
 skhep_testdata = pytest.importorskip("skhep_testdata")
 
@@ -57,7 +60,7 @@ def test_hzz():
         cur_group += 1
 
     edit = tree.arrays()
-    chunks = {name: array for name, array in zip(ak.fields(edit), ak.unzip(edit))}
+    chunks = dict(zip(ak.fields(edit), ak.unzip(edit)))
     for key in count_branches:
         del chunks[key]
     for group in groups:
diff --git a/tests/test_root_to_parquet.py b/tests/test_root_to_parquet.py
index 77b2ec6..92717a2 100644
--- a/tests/test_root_to_parquet.py
+++ b/tests/test_root_to_parquet.py
@@ -1,7 +1,10 @@
-import uproot
+from __future__ import annotations
+
 import awkward as ak
-import odapt as od
 import pytest
+import uproot
+
+import odapt as od
 
 skhep_testdata = pytest.importorskip("skhep_testdata")