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geneticmap-data.pug
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extends header
block content
body
.wrapper
<!-- ******HEADER****** -->
header.header
.header-main.container
h1.logo.col-md-4.col-sm-4
a(href='https://sunflowergenome.org')
img#logo(src='/images/logo.png', width='300px', height='75px', alt='Logo')
.info.col-md-8.col-sm-8
ul.menu-top.navbar-right.hidden-xs
li.divider
a(href='https://sunflowergenome.org') Home
li.divider
a(href='/faq') FAQ
li
a(href='/contact') Contact
br
include nav-data
<!-- ******CONTENT****** -->
.content.container
.page-wrapper
header.page-heading.clearfix
h1.heading-title.pull-left Genetic Map
.breadcrumbs.pull-right
ul.breadcrumbs-list
li.breadcrumbs-label You are here:
li
a(href='https://sunflowergenome.org') Home
i.fa.fa-angle-right
li.current Genetic Map files
.page-content
.row.page-row
aside.page-sidebar.col-md-2.col-sm-2.affix-top
section.widget
ul.nav
li
a(href='/geneticmap') Procedures
|
|
i.fa.fa-book(aria-hidden='true')
li
a(href='/geneticmap-results') Statistics
|
|
i.fa.fa-bar-chart(aria-hidden='true')
li.active
a(href='/geneticmap-data') Files
|
|
i.fa.fa-download(aria-hidden='true')
.events-wrapper.col-md-8.col-sm-7
h2 Downloads
.table-responsive
table.table.table-hover.table-bordered
thead
tr
th Description
th Format
th Download
tbody
tr
td Fixed SNPs
td VCF
td
a.btn.btn-sm.btn-default(href='assets/data/geneticmap/P280_and_P801.qualGT20.fixedHom.vcf.bz2')
span.glyphicon.glyphicon-cloud-download
| Download
tr
td Placed Genomic Contigs
td Tab-delimited table
td
a.btn.btn-sm.btn-default(href='assets/data/geneticmap/gMap.280x801.slidingWindows.splitChimericGenomeScaffolds.allpaths.apr052013.tab.bz2')
span.glyphicon.glyphicon-cloud-download
| Download
tr
td Sliding Window Genetic Map (Using AllPaths Assembly, Apr 5 2013)
td Tab-delimited table
td
a.btn.btn-sm.btn-default(href='assets/data/geneticmap/gMap.280x801.30112011.with_snp_count.tab.bz2')
span.glyphicon.glyphicon-cloud-download
| Download
tr
td Split Chimeric Genome Assembly Scaffolds (Using AllPaths Assembly, Apr 5 2013)
td FASTA
td
a.btn.btn-sm.btn-default(href='assets/data/geneticmap/AllPathsLG_france001.final.assembly.split.fasta.bz2')
span.glyphicon.glyphicon-cloud-download
| Download
tr
td Original Genome Assembly Scaffolds (Using AllPaths Assembly, Apr 5 2013)
td FASTA
td
a.btn.btn-sm.btn-default(href='assets/data/geneticmap/AllPathsLG_france001.final.assembly.fasta.bz2')
span.glyphicon.glyphicon-cloud-download
| Download
tr
td Sliding Window Genetic Map (Using Celera Novk22 Assembly, Apr 5 2013)
td Tab-delimited table
td
a.btn.btn-sm.btn-default(href='assets/data/geneticmap/gMap.280x801.slidingWindows.splitChimericGenomeScaffolds.celeraNovk22.apr052013.tab.bz2')
span.glyphicon.glyphicon-cloud-download
| Download
tr
td
| Split Chimeric Genome Assembly Scaffolds (Using Celera Novk22 Assembly, Apr 5 2013)
td FASTA
td
a.btn.btn-sm.btn-default(href='assets/data/geneticmap/Nov22k22.scf.split.fasta.bz2')
span.glyphicon.glyphicon-cloud-download
| Download
tr
td Original Genome Assembly Scaffolds (Using Celera Novk22 Assembly, Apr 5 2013)
td FASTA
td
a.btn.btn-sm.btn-default(href='assets/data/geneticmap/Nov22k22.scf.fasta.bz2')
span.glyphicon.glyphicon-cloud-download
| Download
tr
td
| Sliding Window Genetic Map (Using Celera Assembly Scaffolded and Extended with SSPACE using 40k Mate Pair libraries, Apr 5 2013)
td Tab-delimited table
td
a.btn.btn-sm.btn-default(href='assets/data/geneticmap/gMap.280x801.slidingWindows.splitChimericGenomeScaffolds.celera14libs.apr052013.tab.bz2')
span.glyphicon.glyphicon-cloud-download
| Download
tr
td
| Split Chimeric Genome Assembly Scaffold (Using Celera Assembly Scaffolded and Extended with SSPACE using 40k Mate Pair libraries, Apr 5 2013)
td FASTA
td
a.btn.btn-sm.btn-default(href='assets/data/geneticmap/Celera_14libs_sspace2_ext.final.scaffolds.split.fasta.bz2')
span.glyphicon.glyphicon-cloud-download
| Download
tr
td
| Original Genome Assembly Scaffolds (Using Celera Assembly Scaffolded and Extended with SSPACE using 40k Mate Pair libraries, Apr 5 2013)
td FASTA
td
a.btn.btn-sm.btn-default(href='assets/data/geneticmap/celera_sspace.scaffoldsSep2012.extended.fasta.bz2')
span.glyphicon.glyphicon-cloud-download
| Download
tr
td Graphical Map
td PDF
td
a.btn.btn-sm.btn-default(href='assets/data/geneticmap/grassa_PAG_2012.v2.lowres.pdf')
span.glyphicon.glyphicon-cloud-download
| Download
include footer