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howto-cmap.pug
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extends header
block content
body
.wrapper
<!-- ******HEADER****** -->
header.header
.header-main.container
h1.logo.col-md-4.col-sm-4
a(href='https://sunflowergenome.org')
img#logo(src='/images/logo.png', width='300px', height='75px', alt='Logo')
.info.col-md-8.col-sm-8
ul.menu-top.navbar-right.hidden-xs
li.divider
a(href='https://sunflowergenome.org') Home
li.divider
a(href='/faq') FAQ
li
a(href='/contact') Contact
br
include nav-home
<!-- ******CONTENT****** -->
.content.container
.page-wrapper
header.page-heading.clearfix
h1.heading-title.pull-left HOWTO: CMap
.breadcrumbs.pull-right
ul.breadcrumbs-list
li.breadcrumbs-label You are here:
li
a(href='https://sunflowergenome.org') Home
i.fa.fa-angle-right
li.current HOWTO: CMap
<!-- breadcrumbs -->
.page-content
.row.page-row
.events-wrapper.col-md-8.col-sm-7
article.events-item.page-row.has-divider.clearfix
p.lead
| This guide will give you a brief overview of how to use the sunflower genetic map viewer cMap. There is also a more complete
|
a(href='https://sunflowergenome.org/cmap/tutorial/') tutorial
| online that provides more details on how to use cMap.
p
| Select one or many chromosomes to draw, which features to display, and click "Draw Selected Maps".
|
a(href='http://www.sunflowergenome.org/cmap/tutorial/page7.html')
img(src='/images/howto/cmap-Slide7-1.jpg')
p The selected maps will be displayed.
|
a(href='http://www.sunflowergenome.org/cmap/tutorial/page25.html')
img(src='/images/howto/cmap-Slide25-2.jpg')
|
a(href='http://www.sunflowergenome.org/cmap/tutorial/page27.html')
img(src='/images/howto/cmap-Slide27-3.jpg')
p Change the map display options.
|
a(href='http://www.sunflowergenome.org/cmap/tutorial/page16.html')
img(src='/images/howto/cmap-Slide16-4.jpg')
p Select "All" for the Show Labels option to display all feature names.
|
a(href='http://www.sunflowergenome.org/cmap/tutorial/page20.html')
img(src='/images/howto/cmap-Slide20-5.jpg')
|
img(src='/images/howto/cmap-map_labels-6.jpg')
p Click on a feature to view its details.
|
a(href='http://www.sunflowergenome.org/cmap/tutorial/page46.html')
img(src='/images/howto/cmap-Slide46-7.jpg')
p Search for individual features by name using wildcards.
|
a(href='http://www.sunflowergenome.org/cmap/tutorial/page44.html')
img(src='/images/howto/cmap-Slide44-8.jpg')
p Each feature is cross-linked back to its physical genome location in JBrowse.
|
img(src='/images/howto/cmap-feature-9.jpg')
aside.page-sidebar.col-md-3.col-md-offset-1.col-sm-4.col-sm-offset-1
section.widget.has-divider
h3.title Is there a problem with the content on this page?
p
| Please
|
a(href='/contact') contact
| us if this page needs to be updated or could be improved.
section.widget.has-divider
h3.title Latest News
article.news-item.row
figure.thumb.col-md-2
img(src='/images/news/expression-thumb-1.jpg', alt='')
.details.col-md-10
h4.title
a(href='/news-expression') HA412HO gene expression browser released
article.news-item.row
figure.thumb.col-md-2
img(src='/images/news/jbrowse-thumb-2.jpg', alt='')
.details.col-md-10
h4.title
a(href='/news-annotation') Gene and transposon annotations released
article.news-item.row
figure.thumb.col-md-2.col-sm-3.col-xs-3
img(alt='', src='/images/news/browser-thumb-3.jpg')
.details.col-md-10.col-sm-9.col-xs-9
h4.title
a(href='/news-browser') Genome browser updates
article.news-item.row
figure.thumb.col-md-2
img(src='/images/news/git-thumb-3.jpg', alt='')
.details.col-md-10
h4.title
a(href='/news-tools') Annotation tools publicly available
include footer