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transcriptome-accessions.pug
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extends header
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<!-- ******HEADER****** -->
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h1.logo.col-md-4.col-sm-4
a(href='https://sunflowergenome.org')
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article.welcome.col-md-8.col-sm-7
h2 Reference-based genotyping of 168 sunflower transcriptomes
p
| ESTs from a variety of cultivated and wild sunflowers were produced via Sanger, 454, and Illumina sequencing. Each sample's ID, species, subspecies or ecotype, and technology used for sequencing is presented in the table of metadata below. Reads were aligned to the TranscriptomeRef_mar30.fa reference assembly using BWA and individuals were genotyped with SAMtools. Indels were excluded. Genotypes are presented in a tab-delimited table with reference sites in rows, and individuals in columns. See the bottom of this page for a descriptive table of the accessions used in genotyping.
h3.has-divider.text-highlight Accessions
.table-responsive
table.table.table-striped.table-bordered
thead
tr
th ID
th Species
th SSP/Ecotype
th Read Technology
tbody
tr
td HA412
td annuus
td elite
td 454
tr
td HA369
td annuus
td elite
td illumina
tr
td HA384
td annuus
td elite
td illumina
tr
td HA412cold
td annuus
td elite
td illumina
tr
td HA412drought
td annuus
td elite
td illumina
tr
td HA412-flowers
td annuus
td elite
td illumina
tr
td HA412-roots_stems
td annuus
td elite
td illumina
tr
td HA89-5
td annuus
td elite
td illumina
tr
td HA89-9
td annuus
td elite
td illumina
tr
td KOSI
td annuus
td elite
td illumina
tr
td MAI
td annuus
td elite
td illumina
tr
td RHA274
td annuus
td elite
td illumina
tr
td Sunrise
td annuus
td elite
td illumina
tr
td VNIIMK8931
td annuus
td elite
td illumina
tr
td ha89
td annuus
td elite
td sanger
tr
td psc8
td annuus
td elite
td sanger
tr
td rha280
td annuus
td elite
td sanger
tr
td rha801
td annuus
td elite
td sanger
tr
td CAN
td annuus
td invasive
td 454
tr
td EUW1
td annuus
td invasive
td 454
tr
td EUW2
td annuus
td invasive
td 454
tr
td ISI
td annuus
td invasive
td 454
tr
td QLD
td annuus
td invasive
td 454
tr
td WAN
td annuus
td invasive
td 454
tr
td SAW3
td annuus
td invasive
td illumina
tr
td HODL
td annuus
td landrace
td 454
tr
td SEL
td annuus
td landrace
td 454
tr
td ARL
td annuus
td landrace
td illumina
tr
td HA
td annuus
td landrace
td illumina
tr
td HAL
td annuus
td landrace
td illumina
tr
td HAW59
td annuus
td landrace
td illumina
tr
td HIL
td annuus
td landrace
td illumina
tr
td HOPL
td annuus
td landrace
td illumina
tr
td MAL
td annuus
td landrace
td illumina
tr
td MEL
td annuus
td landrace
td illumina
tr
td MEN
td annuus
td landrace
td illumina
tr
td ZUL
td annuus
td landrace
td illumina
tr
td HTAI
td annuus
td texanus
td 454
tr
td 14TB-2
td annuus
td texanus
td illumina
tr
td 2OTB-7
td annuus
td texanus
td illumina
tr
td arg14B-14
td annuus
td texanus
td illumina
tr
td btm11-1
td annuus
td texanus
td illumina
tr
td btm3-2
td annuus
td texanus
td illumina
tr
td btm35-4
td annuus
td texanus
td illumina
tr
td btm6-1
td annuus
td texanus
td illumina
tr
td K111
td annuus
td texanus
td illumina
tr
td TEX
td annuus
td texanus
td illumina
tr
td CAW
td annuus
td weedy
td 454
tr
td INW
td annuus
td weedy
td 454
tr
td KAW
td annuus
td weedy
td 454
tr
td UTW
td annuus
td weedy
td 454
tr
td ALB
td annuus
td weedy
td illumina
tr
td Canal2
td annuus
td weedy
td illumina
tr
td Canal5
td annuus
td weedy
td illumina
tr
td Manteca4
td annuus
td weedy
td illumina
tr
td Manteca8
td annuus
td weedy
td illumina
tr
td CON2
td annuus
td wild
td 454
tr
td IOW
td annuus
td wild
td 454
tr
td KSN
td annuus
td wild
td 454
tr
td MOW
td annuus
td wild
td 454
tr
td NDW
td annuus
td wild
td 454
tr
td NMN
td annuus
td wild
td 454
tr
td OKW
td annuus
td wild
td 454
tr
td UTN1
td annuus
td wild
td 454
tr
td Academy2
td annuus
td wild
td illumina
tr
td Academy7
td annuus
td wild
td illumina
tr
td ALB
td annuus
td wild
td illumina
tr
td LEW1
td annuus
td wild
td illumina
tr
td MEN
td annuus
td wild
td illumina
tr
td NEW
td annuus
td wild
td illumina
tr
td TEW
td annuus
td wild
td illumina
tr
td ann1312
td annuus
td wild
td sanger
tr
td HW10
td annuus
td winterii
td illumina
tr
td HW1
td annuus
td winterii
td illumina
tr
td HW3
td annuus
td winterii
td illumina
tr
td HWE13
td annuus
td winterii
td illumina
tr
td HWE2
td annuus
td winterii
td illumina
tr
td HWE5
td annuus
td winterii
td illumina
tr
td F1-14
td annuus X petiolaris
td F1
td illumina
tr
td F1-17
td annuus X petiolaris
td F1
td illumina
tr
td F1-1
td annuus X petiolaris
td F1
td illumina
tr
td F1-3
td annuus X petiolaris
td F1
td illumina
tr
td F1-4
td annuus X petiolaris
td F1
td illumina
tr
td F1-7
td annuus X petiolaris
td F1
td illumina
tr
td F1-TA
td annuus X petiolaris
td F1
td illumina
tr
td F1-TB
td annuus X petiolaris
td F1
td illumina
tr
td Ano1495
td anomalus
td
td illumina
tr
td arg1820
td argophyllus
td
td 454
tr
td Ames449
td argophyllus
td
td illumina
tr
td Ames695
td argophyllus
td
td illumina
tr
td arg11B-11
td argophyllus
td
td illumina
tr
td arg14B-7
td argophyllus
td
td illumina
tr
td ARG1805
td argophyllus
td
td illumina
tr
td ARG1820
td argophyllus
td
td illumina
tr
td ARG1834
td argophyllus
td
td illumina
tr
td arg2B-4
td argophyllus
td
td illumina
tr
td arg4B-8
td argophyllus
td
td illumina
tr
td arg6B-1
td argophyllus
td
td illumina
tr
td btm10-5
td argophyllus
td
td illumina
tr
td btm13-4
td argophyllus
td
td illumina
tr
td btm17-4
td argophyllus
td
td illumina
tr
td btm19-1
td argophyllus
td
td illumina
tr
td btm19-2
td argophyllus
td
td illumina
tr
td btm20-8
td argophyllus
td
td illumina
tr
td btm21-4
td argophyllus
td
td illumina
tr
td btm22-8
td argophyllus
td
td illumina
tr
td btm25-2
td argophyllus
td
td illumina
tr
td btm26-4
td argophyllus
td
td illumina
tr
td btm27-3
td argophyllus
td
td illumina
tr
td btm30-6
td argophyllus
td
td illumina
tr
td btm31-6
td argophyllus
td
td illumina
tr
td btm32-3
td argophyllus
td
td illumina
tr
td btm34-6
td argophyllus
td
td illumina
tr
td btm5-1
td argophyllus
td
td illumina
tr
td btm7B-14
td argophyllus
td
td illumina
tr
td btm9-4
td argophyllus
td
td illumina
tr
td argophyllus.chwlms
td argophyllus
td
td sanger
tr
td argophyllus.chwxyz
td argophyllus
td
td sanger
tr
td argophyllus.qh
td argophyllus
td
td sanger
tr
td ciliaris.chclms
td ciliaris
td
td sanger
tr
td Dahlia-buds_flowers_leaves
td Dahlia sp.
td
td illumina
tr
td HDW
td deblis
td
td 454
tr
td K105
td deblis
td
td illumina
tr
td RAR43
td deblis
td
td illumina
tr
td RAR46
td deblis
td
td illumina
tr
td RAR50
td deblis
td
td illumina
tr
td RAR55
td deblis
td
td illumina
tr
td RAR57
td deblis
td
td illumina
tr
td arg4B-14
td deblis
td cucumerifolius
td illumina
tr
td btm30-4
td deblis
td cucumerifolius
td illumina
tr
td btm33-4
td deblis
td cucumerifolius
td illumina
tr
td Des1484
td deserticola
td
td illumina
tr
td des2458
td deserticola
td
td illumina
tr
td exilis.chelms
td exilis
td
td sanger
tr
td exilis.chelms
td exilis
td
td sanger
tr
td king141B
td paradoxus
td
td illumina
tr
td king145B
td paradoxus
td
td illumina
tr
td king147A
td paradoxus
td
td illumina
tr
td King151
td paradoxus
td
td illumina
tr
td king152
td paradoxus
td
td illumina
tr
td King156B
td paradoxus
td
td illumina
tr
td paradoxus.chulms
td paradoxus
td
td sanger
tr
td paradoxus.chuxyz
td paradoxus
td
td sanger
tr
td paradoxus.qh
td paradoxus
td
td sanger
tr
td PL109
td petiolaris
td
td 454
tr
td GSD1439
td petiolaris
td
td illumina
tr
td GSD975
td petiolaris
td
td illumina
tr
td ISS01
td petiolaris
td
td illumina
tr
td ISS19
td petiolaris
td
td illumina
tr
td KSG54
td petiolaris
td
td illumina
tr
td pet2119
td petiolaris
td
td illumina
tr
td Pet2152
td petiolaris
td
td illumina
tr
td PET-2
td petiolaris
td
td illumina
tr
td PET2341
td petiolaris
td
td illumina
tr
td PET2342
td petiolaris
td
td illumina
tr
td PET2343
td petiolaris
td
td illumina
tr
td PET2344
td petiolaris
td
td illumina
tr
td PET-3
td petiolaris
td
td illumina
tr
td pet489
td petiolaris
td
td illumina
tr
td Pet489
td petiolaris
td
td illumina
tr
td Pi468805
td petiolaris
td
td illumina
tr
td PI468812
td petiolaris
td
td illumina
tr
td PI468815
td petiolaris
td
td illumina
tr
td PI503232
td petiolaris
td
td illumina
tr
td PI531058
td petiolaris
td
td illumina
tr
td PI547210
td petiolaris
td
td illumina
tr
td PI586932b_1
td petiolaris
td
td illumina
tr
td PI613767
td petiolaris
td
td illumina
tr
td PI649907
td petiolaris
td
td illumina
tr
td PL109
td petiolaris
td
td illumina
tr
td petiolaris.chpxyz
td petiolaris
td
td sanger
tr
td btm13-6
td praecox
td runyonii
td illumina
tr
td btm14-4
td praecox
td runyonii
td illumina
tr
td btm15-2
td praecox
td runyonii
td illumina
tr
td btm16-2
td praecox
td runyonii
td illumina
tr
td tuberosus.chtlms
td tuberosus
td
td sanger
tr
td tuberosus.chtxyz
td tuberosus
td
td sanger
include footer