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2_7M_SIN.R
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#### ANÁLISIS DE CÁMARAS TRAMPA ####
rm(list = ls())
#library(camtrapR)
library(lubridate)
library(overlap)
library(readr)
library(tidyr)
library(dplyr)
library(tidyverse)
library(ggtext)
library(rphylopic)
library(cowplot)
library(png)
library(magick)
setwd("C:/Users/shalo/OneDrive/Escritorio/Ilán/Tesis/Archivos ahora")
getwd()
datastation <- read.csv("datastation_final.csv",
header = TRUE,
sep = ",")
datacam <- read.csv("datacam_final.csv",
header = T,
sep = ";",
row.names = 1)
datacam$DateTimeOriginal <- as.factor(datacam$DateTimeOriginal)
#### PNGs ####
sun <- readPNG("sun.png")
moon <- readPNG("moon.png")
rhea <- readPNG("rhea.png")
axis <- readPNG("axis.png")
hydrochoerus <- image_flop(image_read("https://images.phylopic.org/images/9c234021-ce53-45d9-8fdd-b0ca3115a451/raster/1024x596.png?build=103"))
sus <- image_flop(image_read("http://phylopic.org/assets/images/submissions/3d8acaf6-4355-491e-8e86-4a411b53b98b.128.png"))
cingulata <- image_flop(image_read("https://images.phylopic.org/images/5d59b5ce-c1dd-40f6-b295-8d2629b9775e/raster/1024x493.png?build=103"))
mazama <- image_flop(image_read("http://phylopic.org/assets/images/submissions/b5f40112-0cb8-4994-aa70-28ac97ccb83f.128.png"))
canidae <- image_flop(image_read("http://phylopic.org/assets/images/submissions/d67d3bf6-3509-4ab6-819a-cd409985347e.128.png"))
leopardus <- image_flop(image_read("https://www.phylopic.org/images/2fc7bbbf-8ca7-48fb-8495-d351cd3b1f99"))
#### Hist_rad ####
registers <- datacam
registers$Time <- as.character(registers$Time)
registers$decimal <- sapply(strsplit(registers$Time,":"), function(x){
x <- as.numeric(x)
x[1]+x[2]/60+ x[3]/3600})
estacion <- "A"
#### Axis ####
especie1 <- registers %>% filter(Species == "axis")
ymax = 2500
pngs <- axis
n <- "n = 16015"
(plot_blanco <- ggplot(especie1, aes(x = decimal)) +
geom_histogram(breaks = seq(0, 24),
fill = "steelblue4",
colour = "black",
size = 0.3) +
ylim(0, ymax) +
scale_x_continuous("", limits = c(0, 24), breaks = seq(0, 24), labels = seq(0, 24)) +
labs(y = "Número de registros") +
coord_polar(start = 0) +
theme_bw() +
theme(text = element_text(size = 17, face = "bold"),
axis.title.x = element_text(margin = unit(c(2, 0, 0, 0), "mm")),
axis.title.y = element_text(margin = unit(c(0, 3, 0, 0), "mm")),
plot.title = element_markdown(size = 25, hjust = 0.5),
panel.grid = element_line(color = "grey")))
(plot_color <- plot_blanco +
annotate("rect", #Sombreado gris
xmin = c(18,0), xmax = c(24, 8),
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "grey25") +
annotate("rect", #Sombreado amarillo
xmin = 6, xmax = 20,
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "#FFD819"))
ggdraw(plot_color) +
draw_image(sun, x = 0.52, y = 0.21, width = 0.07, height = 0.06) +
draw_image(moon, x = 0.515, y = 0.79, width = 0.08, height = 0.07, scale = 0.75) +
draw_image(pngs, x = 0.15, y = 0.83, width = 0.15, height = 0.15) +
draw_label(n, x = 0.86, y = 0.15, size = 14, fontface = "bold") +
draw_label(estacion, x = 0.23, y = 0.15, size = 25, fontface = "bold")
#### Hydrochoerus ####
especie1 <- registers %>% filter(Species == "hydrochoerus")
ymax = 2500
pngs <- hydrochoerus
n <- "n = 14490"
(plot_blanco <- ggplot(especie1, aes(x = decimal)) +
geom_histogram(breaks = seq(0, 24),
fill = "steelblue4",
colour = "black",
size = 0.3) +
ylim(0, ymax) +
scale_x_continuous("", limits = c(0, 24), breaks = seq(0, 24), labels = seq(0, 24)) +
labs(y = "Número de registros") +
coord_polar(start = 0) +
theme_bw() +
theme(text = element_text(size = 17, face = "bold"),
axis.title.x = element_text(margin = unit(c(2, 0, 0, 0), "mm")),
axis.title.y = element_text(margin = unit(c(0, 3, 0, 0), "mm")),
plot.title = element_markdown(size = 25, hjust = 0.5),
panel.grid = element_line(color = "grey")))
(plot_color <- plot_blanco +
annotate("rect", #Sombreado gris
xmin = c(18,0), xmax = c(24, 8),
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "grey25") +
annotate("rect", #Sombreado amarillo
xmin = 6, xmax = 20,
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "#FFD819"))
ggdraw(plot_color) +
draw_image(sun, x = 0.52, y = 0.21, width = 0.07, height = 0.06) +
draw_image(moon, x = 0.51, y = 0.79, width = 0.08, height = 0.07, scale = 0.75) +
draw_image(pngs, x = 0.17, y = 0.84, width = 0.15, height = 0.15) +
draw_label(n, x = 0.86, y = 0.15, size = 14, fontface = "bold") +
draw_label(estacion, x = 0.23, y = 0.15, size = 25, fontface = "bold")
#### Canidae ####
especie1 <- registers %>% filter(Species == "canidae")
ymax = 100
n <- "n = 328"
pngs <- canidae
(plot_blanco <- ggplot(especie1, aes(x = decimal)) +
geom_histogram(breaks = seq(0, 24),
fill = "steelblue4",
colour = "black",
size = 0.3) +
ylim(0, ymax) +
scale_x_continuous("", limits = c(0, 24), breaks = seq(0, 24), labels = seq(0, 24)) +
labs(y = "Número de registros") +
coord_polar(start = 0) +
theme_bw() +
theme(text = element_text(size = 17, face = "bold"),
axis.title.x = element_text(margin = unit(c(2, 0, 0, 0), "mm")),
axis.title.y = element_text(margin = unit(c(0, 3, 0, 0), "mm")),
plot.title = element_markdown(size = 25, hjust = 0.5),
panel.grid = element_line(color = "grey")))
(plot_color <- plot_blanco +
annotate("rect", #Sombreado gris
xmin = c(18,0), xmax = c(24, 8),
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "grey25") +
annotate("rect", #Sombreado amarillo
xmin = 6, xmax = 20,
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "#FFD819"))
ggdraw(plot_color) +
draw_image(sun, x = 0.515, y = 0.23, width = 0.07, height = 0.06) +
draw_image(moon, x = 0.505, y = 0.775, width = 0.08, height = 0.07, scale = 0.75) +
#draw_image(pngs, x = 0.16, y = 0.84, width = 0.15, height = 0.15) +
draw_label(n, x = 0.86, y = 0.15, size = 14, fontface = "bold") +
draw_label(estacion, x = 0.23, y = 0.15, size = 25, fontface = "bold")
#### Sus ####
especie1 <- registers %>% filter(Species == "sus")
ymax = 100
pngs <- sus
n = "n = 486"
(plot_blanco <- ggplot(especie1, aes(x = decimal)) +
geom_histogram(breaks = seq(0, 24),
fill = "steelblue4",
colour = "black",
size = 0.3) +
ylim(0,100) +
scale_x_continuous("", limits = c(0, 24), breaks = seq(0, 24), labels = seq(0, 24)) +
labs(y = "Número de registros") +
coord_polar(start = 0) +
theme_bw() +
theme(text = element_text(size = 17, face = "bold"),
axis.title.x = element_text(margin = unit(c(2, 0, 0, 0), "mm")),
axis.title.y = element_text(margin = unit(c(0, 3, 0, 0), "mm")),
plot.title = element_markdown(size = 25, hjust = 0.5),
panel.grid = element_line(color = "grey")))
(plot_color <- plot_blanco +
annotate("rect",
xmin = c(18,0), xmax = c(24, 8),
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "grey25") +
annotate("rect", #Sombreado amarillo
xmin = 6, xmax = 20,
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "#FFD819"))
ggdraw(plot_color) +
draw_image(sun, x = 0.515, y = 0.23, width = 0.07, height = 0.06) +
draw_image(moon, x = 0.505, y = 0.775, width = 0.08, height = 0.07, scale = 0.75) +
draw_image(pngs, x = 0.16, y = 0.84, width = 0.15, height = 0.15) +
draw_label(n, x = 0.87, y = 0.15, size = 14, fontface = "bold") +
draw_label(estacion, x = 0.23, y = 0.15, size = 25, fontface = "bold")
#### Rhea ####
especie1 <- registers %>% filter(Species == "rhea")
ymax = 250
pngs <- rhea
n <- "n = 1032"
(plot_blanco <- ggplot(especie1, aes(x = decimal)) +
geom_histogram(breaks = seq(0, 24),
#aes(y = stat(count / sum(count))), #Esta línea me pone el eje y en proporción
fill = "steelblue4",
colour = "black",
size = 0.3) +
ylim(0, ymax) + #PARA TODOS MENOS PARA AXIS E HYDROCHOERUS
scale_x_continuous("", limits = c(0, 24), breaks = seq(0, 24), labels = seq(0, 24)) +
labs(y = "Número de registros") +
coord_polar(start = 0) +
theme_bw() +
theme(text = element_text(size = 17, face = "bold"),
axis.title.x = element_text(margin = unit(c(2, 0, 0, 0), "mm")),
axis.title.y = element_text(margin = unit(c(0, 3, 0, 0), "mm")),
plot.title = element_markdown(size = 25, hjust = 0.5),
panel.grid = element_line(color = "grey")))
(plot_color <- plot_blanco +
annotate("rect", #Sombreado gris
xmin = c(18,0), xmax = c(24, 8),
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "grey25") +
annotate("rect", #Sombreado amarillo
xmin = 6, xmax = 20,
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "#FFD819"))
ggdraw(plot_color) +
draw_image(sun, x = 0.515, y = 0.21, width = 0.07, height = 0.06) +
draw_image(moon, x = 0.51, y = 0.78, width = 0.08, height = 0.07, scale = 0.75) +
draw_image(pngs, x = 0.16, y = 0.82, width = 0.15, height = 0.15) +
draw_label(n, x = 0.87, y = 0.15, size = 14, fontface = "bold") +
draw_label(estacion, x = 0.23, y = 0.15, size = 25, fontface = "bold")
#### Cingulata ####
especie1 <- registers %>% filter(Species == "cingulata")
ymax = 100
pngs <- cingulata
n <- "n = 428"
(plot_blanco <- ggplot(especie1, aes(x = decimal)) +
geom_histogram(breaks = seq(0, 24),
fill = "steelblue4",
colour = "black",
size = 0.3) +
ylim(0, ymax) + #PARA TODOS MENOS PARA AXIS E HYDROCHOERUS
scale_x_continuous("", limits = c(0, 24), breaks = seq(0, 24), labels = seq(0, 24)) +
labs(y = "Número de registros") +
coord_polar(start = 0) +
theme_bw() +
theme(text = element_text(size = 17, face = "bold"),
axis.title.x = element_text(margin = unit(c(2, 0, 0, 0), "mm")),
axis.title.y = element_text(margin = unit(c(0, 3, 0, 0), "mm")),
plot.title = element_markdown(size = 25, hjust = 0.5),
panel.grid = element_line(color = "grey")))
(plot_color <- plot_blanco +
annotate("rect", #Sombreado gris
xmin = c(18,0), xmax = c(24, 8),
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "grey25") +
annotate("rect", #Sombreado amarillo
xmin = 6, xmax = 20,
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "#FFD819"))
ggdraw(plot_color) +
draw_image(sun, x = 0.515, y = 0.23, width = 0.07, height = 0.06) +
draw_image(moon, x = 0.505, y = 0.775, width = 0.08, height = 0.07, scale = 0.75) +
draw_image(pngs, x = 0.16, y = 0.84, width = 0.15, height = 0.15) +
draw_label(n, x = 0.87, y = 0.15, size = 14, fontface = "bold") +
draw_label(estacion, x = 0.23, y = 0.15, size = 25, fontface = "bold")
#### Mazama ####
especie1 <- registers %>% filter(Species == "mazama")
ymax = 100
pngs <- mazama
n <- "n = 216"
(plot_blanco <- ggplot(especie1, aes(x = decimal)) +
geom_histogram(breaks = seq(0, 24),
#aes(y = stat(count / sum(count))), #Esta línea me pone el eje y en proporción
fill = "steelblue4",
colour = "black",
size = 0.3) +
ylim(0, ymax) + #PARA TODOS MENOS PARA AXIS E HYDROCHOERUS
scale_x_continuous("", limits = c(0, 24), breaks = seq(0, 24), labels = seq(0, 24)) +
labs(y = "Número de registros") +
coord_polar(start = 0) +
theme_bw() +
theme(text = element_text(size = 17, face = "bold"),
axis.title.x = element_text(margin = unit(c(2, 0, 0, 0), "mm")),
axis.title.y = element_text(margin = unit(c(0, 3, 0, 0), "mm")),
plot.title = element_markdown(size = 25, hjust = 0.5),
panel.grid = element_line(color = "grey")))
(plot_color <- plot_blanco +
annotate("rect", #Sombreado gris
xmin = c(18,0), xmax = c(24, 8),
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "grey25") +
annotate("rect", #Sombreado amarillo
xmin = 6, xmax = 20,
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "#FFD819"))
ggdraw(plot_color) +
draw_image(sun, x = 0.515, y = 0.23, width = 0.07, height = 0.06) +
draw_image(moon, x = 0.505, y = 0.775, width = 0.08, height = 0.07, scale = 0.75) +
draw_image(pngs, x = 0.14, y = 0.83, width = 0.15, height = 0.15) +
draw_label(n, x = 0.87, y = 0.15, size = 14, fontface = "bold") +
draw_label(estacion, x = 0.23, y = 0.15, size = 25, fontface = "bold")
#### Leopardus ####
especie1 <- registers %>% filter(Species == "leopardus")
ymax = 100
pngs <- leopardus
n = "n = 67"
(plot_blanco <- ggplot(especie1, aes(x = decimal)) +
geom_histogram(breaks = seq(0, 24),
#aes(y = stat(count / sum(count))), #Esta línea me pone el eje y en proporción
fill = "steelblue4",
colour = "black",
size = 0.3) +
ylim(0, ymax) + #PARA TODOS MENOS PARA AXIS E HYDROCHOERUS
scale_x_continuous("", limits = c(0, 24), breaks = seq(0, 24), labels = seq(0, 24)) +
labs(y = "Número de registros") +
coord_polar(start = 0) +
theme_bw() +
theme(text = element_text(size = 17, face = "bold"),
axis.title.x = element_text(margin = unit(c(2, 0, 0, 0), "mm")),
axis.title.y = element_text(margin = unit(c(0, 3, 0, 0), "mm")),
plot.title = element_markdown(size = 25, hjust = 0.5),
panel.grid = element_line(color = "grey")))
(plot_color <- plot_blanco +
annotate("rect", #Sombreado gris
xmin = c(18,0), xmax = c(24, 8),
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "grey25") +
annotate("rect", #Sombreado amarillo
xmin = 6, xmax = 20,
ymin = 0, ymax = ymax, #VARIAR EL VALOR DE YMAX CON LA ESPECIE
alpha = 0.3, fill = "#FFD819"))
windows(500,400)
ggdraw(plot_color) +
draw_image(sun, x = 0.515, y = 0.23, width = 0.07, height = 0.06) +
draw_image(moon, x = 0.505, y = 0.775, width = 0.08, height = 0.07, scale = 0.75) +
# draw_image(pngs, x = 0.16, y = 0.84, width = 0.15, height = 0.15) +
draw_label(n, x = 0.87, y = 0.15, size = 14, fontface = "bold") +
draw_label(estacion, x = 0.23, y = 0.15, size = 25, fontface = "bold")