Dockerfile-ppp

FROM condaforge/mambaforge:24.1.2-0
LABEL maintainer "Ciheim Brown"

## Description ##
# condaforge is based on a stripped down ubuntu image.  We need some extra bits for frerun + fremake
####

# apt installs to /usr/bin/
RUN apt update \
  && apt -y install uuid-runtime time csh python bc 

# Put runscript in container and make it executable
COPY runscript.sh /exec/runscript.sh
RUN chmod +x /exec/runscript.sh

# Set up conda environment directory for cylc workflow
RUN mkdir /opt/conda/cylc-flow-tools
COPY cylc-flow-tools.yaml /opt/conda/cylc-flow-tools
#COPY macro.py /tmp

# Finding + replacing the problematic macro.py file with the corrected version
RUN conda env create --file /opt/conda/cylc-flow-tools/cylc-flow-tools.yaml -p /opt/conda/cylc-flow-tools
#  && /bin/bash -c 'export macro=$(find /opt/conda/cylc-flow-tools/lib -wholename */site-packages/metomi/rose) \
#  && mv -f /tmp/macro.py $macro/macro.py' \
#  && git config --global --add safe.directory /mnt2  

RUN IFS="" \ 
  && pv=$(python --version) \ 
  && pv1=$(echo $pv | cut -d ' ' -f2) \ 
  && conda config --add pkgs_dirs /opt/conda/cylc-flow-tools/lib/python$pv1/site-packages

RUN conda install urwid==2.*

ENTRYPOINT ["/bin/bash"]