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CHANGELOG.md

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0.0.10 - 2024-07-04

  • Migrate to hatch to ease development and include multiple authors.
  • Add @johnarevalo to the author list.

0.0.9 - 2022-11-23

  • Stop excluding README.md from the build, because setup.py depends on this file.

0.0.8 - 2022-11-22

  • Replace scipy.cluster.vq.kmeans2 with the faster function sklearn.cluster.KMeans. Thanks to @johnarevalo for providing details about the running time with both functions in PR #20.

0.0.6 - 2022-02-02

  • Replace scipy.cluster.vq.kmeans with scipy.cluster.vq.kmeans2 to address issue #10 where we learned that kmeans does not always return k centroids, but kmeans2 does return k centroids. Thanks to @onionpork and @DennisPost10 for reporting this.

0.0.5 - 2020-08-11

  • Expose max_iter_harmony as a new top-level argument, in addition to the previously exposed max_iter_kmeans. This more closely resembles the original interface in the harmony R package. Thanks to @pinin4fjords for pull request #8

0.0.4 - 2020-03-02

  • Fix a bug in the LISI code that sometimes causes computation to break. Thanks to @tariqdaouda for reporting it in issue #1

  • Fix a bug that prevents controlling the number of iterations. Thanks to @liboxun for reporting it in issue #3

  • Fix a bug causing slightly different results than expected. Thanks to @bli25broad for pull request #2

  • Add support for multiple categorical batch variables.

0.0.3 - 2019-12-26

  • Speed up the Harmony algorithm. It should now be as fast as the R package.

0.0.2 - 2019-12-20

0.0.1 - 2019-12-19