Releases: smith-chem-wisc/mzLib
Releases · smith-chem-wisc/mzLib
Update to .NET 6.0
.NET 6.0 (#615) * net6.0 * merge upstream and update workflows * use nuget pack not dotnet pack * name * setup nuget separately * change release name back * readme * image before releases * replace webclient with httpclient * use multiline * use line concatenation for a couple places * no slash * use && * break up steps more * fix xml writer errors and such * more fixes * fix httpclient * code cleanup * add back comments Co-authored-by: MICHAEL SHORTREED <[email protected]>
proteoform truncation products
Top down biomarker III (#626) * correct Within calculation * update unit tests * first correct top-down biomarker test * remove unused test code * quotable protease * unquotable * add full length proteoform proteolysis products for biomarker search with unit tests * new strategy for adding proteolysis products * more complete biomarker addition * works for protein.xml databases * add unit test biomarkers with xml database * clean up * more clean up * fix unit test * adjust biomarker generation for three initiator methionine behaviors (cleave, retain, variable) * make sure decoy biomarkers for standard xml proteolysis products are generated * deal appropriately w/ n-terminal methionine cleavage * last litle unit test tweaks * delete unused code * add biomarkers during protein database load * greater clarity for biomarker proteolysis product entries * change digest for top-down biomarker search to resolve issues in MM * bro. shouldn't have been that hard * cleanup * add unit test * don't need to cover unit tests with unit tests * increase unit test coverage of protein.cs * codemaid * biomarkers on protein with no methionine * unit test booster * ACs comments * more summary statemsn * deleted mzlib.sln scarry * delete empty line * c-terminal products w/ and w/o methionine * delete remaining initiator meth behavior dependances * remove reference to meth behavior in biomarker test functions * fix effected unit tests * fix more unit tests * Biomarkers changed to Truncations * Biomarker to truncation * added method summaries * MsDataScan tests to boost coverage * more MsDataScan tests * more MsDataFile tests * delete unused comment Co-authored-by: MICHAEL SHORTREED <[email protected]>
proteoform truncation and biomarker products
Top down biomarker (#621) * correct Within calculation * update unit tests * first correct top-down biomarker test * remove unused test code * quotable protease * unquotable * add full length proteoform proteolysis products for biomarker search with unit tests * new strategy for adding proteolysis products * more complete biomarker addition * works for protein.xml databases * add unit test biomarkers with xml database * clean up * more clean up * fix unit test * adjust biomarker generation for three initiator methionine behaviors (cleave, retain, variable) * make sure decoy biomarkers for standard xml proteolysis products are generated * deal appropriately w/ n-terminal methionine cleavage * last litle unit test tweaks * delete unused code * add biomarkers during protein database load * greater clarity for biomarker proteolysis product entries * change digest for top-down biomarker search to resolve issues in MM * bro. shouldn't have been that hard * cleanup * add unit test * don't need to cover unit tests with unit tests * increase unit test coverage of protein.cs * codemaid * biomarkers on protein with no methionine * unit test booster * ACs comments * more summary statemsn * deleted mzlib.sln scarry Co-authored-by: MICHAEL SHORTREED <[email protected]>
proteoform bifurcation among other things
1.0.524 Use multiline commands in build-test actions to get proper exit codes…
1.0.523: Use nuget pack instead of dotnet pack (#619)
* use nuget pack not dotnet pack
1.0.522
1.0.521: Change directory before restore in release workflow (#617)
* change directory before restore * try coverlet.collector * update nuget badge to have downloads * codecov file location
