diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk index 2bb7d659c..6df89dee4 100644 --- a/workflow/rules/common.smk +++ b/workflow/rules/common.smk @@ -166,7 +166,7 @@ def get_read_group(wildcards): """Denote sample name and platform in read group.""" return r"-R '@RG\tID:{sample}\tSM:{sample}\tPL:{platform}'".format( sample=wildcards.sample, - platform=samples.loc[wildcards.sample, "platform"]) + platform=samples.loc[[wildcards.sample], "platform"].head(1).item()) def get_tmb_targets():