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Copy pathInterproscan.sh
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Interproscan.sh
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################################## Install InterProScan ##################################
# install the core InterProScan software
cd /srv/scratch/z5039045/Softwares/interproscan
wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.39-77.0/interproscan-5.39-77.0-64-bit.tar.gz
wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/5.39-77.0/interproscan-5.39-77.0-64-bit.tar.gz.md5
tar -pxvzf interproscan-5.39-77.0-*-bit.tar.gz
# Install Panther Data
cd /srv/scratch/z5039045/Softwares/interproscan/interproscan-5.39-77.0/data
wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/data/panther-data-14.1.tar.gz
wget ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/data/panther-data-14.1.tar.gz.md5
tar -pxvzf panther-data-14.1.tar.gz
# Works on desktop Linux, but java error on Katana !!!
module load perl/5.28.0
module load java/8u201-jre
/srv/scratch/z5039045/Softwares/interproscan/interproscan-5.39-77.0/interproscan.sh -h
#################################### run InterProScan ####################################
module purge
module load openjdk/15.0.1
module load interproscan/5.44-79.0
cd /srv/scratch/z5039045/P67b_genome
# interproscan.sh -i P67b.faa -d P67b_interproscan_wd -f tsv -T P67b_interproscan_wd_tmp
# interproscan.sh -i P67b.faa -f tsv -T P67b_interproscan_wd_tmp
cd /srv/scratch/z5039045/get_homologues_test
interproscan.sh -i P67b.faa -f tsv -T P67b_interproscan_wd_tmp
#####
module unload java
module unload interproscan
module load java/8u201-jre
module load perl/5.28.0
module load interproscan/5.35-74.0
#####
module unload java
module load java/7u51
module load java/8u121
module load java/8u201-jdk
module load java/8u201-jre
module load java/8u231-jre
module load java/8u45
module load openjdk/15.0.1
module load openjdk/14.0.1
module load openjdk/11.0.2
module purge
module unload java
module unload interproscan
module load java/8u231-jre
module load perl/5.28.0
module load openjdk/15.0.1
module load interproscan/5.35-74.0
module purge
module load java/8u201-jre
module load interproscan/5.35-74.0
module load perl/5.28.0
module unload java
module load java/8u201-jre
module unload openjdk
module load openjdk/11.0.2
module load interproscan/5.44-79.0
module purge
module load openjdk/15.0.1
module load interproscan/5.44-79.0
interproscan.sh -i ANE_00001.fasta -f tsv -T ANE_00001_interproscan_wd_tmp
1012 module load interproscan/5.44-79.0
1013 module load openjdk/15.0.1
1014 module load interproscan/5.44-79.0
1015 module load openjdk/14.0.1
1016 module unload openjdk/15.0.1
1017 module load openjdk/15.0.1
1018 module unload openjdk/15.0.1
1019 module load openjdk/14.0.1
1020 module unload openjdk
1021 module load openjdk/11.0.2
1022 pwd
1023 cd /srv/scratch/z5039045/GTDB_SSU_test
1024 /srv/scratch/z5039045/GTDB_SSU_test
1025 cd
1026 source scratch.sh
1027 module avail
1028 module load interproscan/5.44-79.0
1029 interproscan
1030 module unload java
1031 module unload interproscan
1032 module load java/8u201-jre
1033 module load perl/5.28.0
1034 module load interproscan/5.35-74.0
1035 module lost
1036 module list
1037 module avail
1038 module purge
1039 module load interproscan/5.44-79.0
1040 module load openjdk/15.0.1
1041 module load interproscan/5.44-79.0