commands.txt

# mkdir /Users/myusername/testFolder
export basedir=/Users/myusername/testFolder
cd $basedir


# Synth

docker run --rm -it \
        -v empty:/flywheel/v0/input/config.json \
        -v $basedir:/flywheel/v0/output \
        garikoitz/prfsynth


mv $basedir/prfsynth-config-defaults.json $basedir/prfsynth_sub-001_sess-20200320.json



docker run --rm -it \
        -v $basedir/prfsynth_sub-001_sess-20200320.json:/flywheel/v0/input/config.json \
        -v $basedir:/flywheel/v0/output \
           garikoitz/prfsynth



# Analyze

docker run --rm -it --network=host \
      -v $basedir/empty:/flywheel/v0/input:ro  \
      -v $basedir:/flywheel/v0/output \
        garikoitz/prfanalyze-vista:latest


mv $basedir/prfanalyze-vista-default-config.json $basedir/prfanalyze-vista-config_sub-001_sess-20200320.json


docker run --rm -it --network=host \
      -v $basedir:/flywheel/v0/input \
      -v $basedir:/flywheel/v0/output \
      -v $basedir/prfanalyze-vista-config_sub-001_sess-20200320.json:/flywheel/v0/input/config.json:ro  \
         garikoitz/prfanalyze-vista:latest



./PRFmodel/gear/prfanalyze/run_prfanalyze.sh prfpy $basedir prfanalyze-prfpy/default_config.json


# Report

docker run --rm -it \
        -v empty:/flywheel/v0/input/config.json \
        -v $basedir:/flywheel/v0/output \
        garikoitz/prfreport


mv $basedir/prfreport-configuration-defaults.json $basedir/prfreport-config_sub-001_sess-20200320.json


docker run --rm -it \
        -v $basedir/prfreport-config_sub-002_sess-20200320.json:/flywheel/v0/input/config.json \
        -v $basedir:/flywheel/v0/output \
        garikoitz/prfreport