From 222f97aa6b2292edd4162073fac6eb2dcff415a9 Mon Sep 17 00:00:00 2001 From: sdwfrost Date: Wed, 31 Dec 2014 11:36:15 +0000 Subject: [PATCH] Bug fixes and a new test file --- Configs/settings.ibf | 2 +- Configs/settings_IGH.ibf | 6 +-- test/PW57.fas | 114 +++++++++++++++++++++++++++++++++++++++ test/PW57_full.txt | 58 ++++++++++++++++++++ test/PW57_original.txt | 58 ++++++++++++++++++++ 5 files changed, 234 insertions(+), 4 deletions(-) create mode 100644 test/PW57.fas create mode 100644 test/PW57_full.txt create mode 100644 test/PW57_original.txt diff --git a/Configs/settings.ibf b/Configs/settings.ibf index 47fc661..9b3f1b8 100644 --- a/Configs/settings.ibf +++ b/Configs/settings.ibf @@ -1 +1 @@ -ExecuteAFile ("settings_IGH-full.ibf"); +ExecuteAFile ("settings_IGH.ibf"); diff --git a/Configs/settings_IGH.ibf b/Configs/settings_IGH.ibf index bced3fd..26d06fd 100644 --- a/Configs/settings_IGH.ibf +++ b/Configs/settings_IGH.ibf @@ -30,7 +30,7 @@ BICMinLength = 20; */ -referenceAlignmentFileName = "HumanIGG.nex"; +referenceAlignmentFileName = "HumanIGH.nex"; /* the name of the reference alignment file (MUST be in the 'data' directory and have a .labels @@ -56,5 +56,5 @@ _validBreakpointStructure = {}; _validBreakpointStructure [1] = {"0":"^V[^\\,]+\\,J[^\\,]+\\ inter", }; -_annotateSequenceByAlignment = "MapIGG"; -ExecuteAFile ("Annotators/IGG.ibf"); \ No newline at end of file +_annotateSequenceByAlignment = "MapIGH"; +ExecuteAFile ("Annotators/IGH.ibf"); diff --git a/test/PW57.fas b/test/PW57.fas new file mode 100644 index 0000000..020102b --- /dev/null +++ b/test/PW57.fas @@ -0,0 +1,114 @@ +>AF262145 +CAGGTGCAGCTCCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTAACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCTCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262146 +CAGGTGCAGCTACACCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGCAAGGGGCTGCAATGGATTGGTGAAATCACTCATAGTGGAACCACCATCAACAACCCCTCCCTCCAGAGTCGAGTCAGCACATCAGTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTATATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATCTCTGGGGCCAAGGTGCGCTGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262147 +CAGGTGCAGTTACACCAGTGGGGCGCAGGACTGGTGAAGCCTCCGGAGACCCTGTCCCTCACTTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCAATTACAGTGGCACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCGCCACATCAGCTGGCACGTCCAAGAATCAGTTCTCCCTTATGTTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262148 +CAGGTGCGGCTACAACAATGGGGCGCAGGACTCTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGGTGTCTTCGGTGTGTCCCTCAGTGGTTACTACTGGACCTGGATCCGCCAGCCCCCAAACAAGGGGCTAGAGTGGATAGGGGAAATCACTCAGACTGGAGGCACCATCTACAACCCGTCCCTCCAGAGTCGAGTCACCATTTCAGTTGCCACGTCCAAGGCACAGTTGTCCCTGAAGATGACCTCTGTGACCGCCGCGGACACGGCTACTTATTTCTGTGCGCGGATGACTGTGGATCGGCGTACTTTTGATCTCTGGGGCCAGGGGACACCGGTCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262149 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGATCCACCGTCATCAACCCGTCCCTCCAGAATCGAGTCACTACATCAATTGACGCGGCCAAGAGTCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAGGGGGCACTGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262150 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTGCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCAGTGTGTACATCTGGACCTGGATCCGCCAGCCCCCAGGGAAGGGTCTGGAGTGGATTGGGGAAATCAGTCATGCTGGAAGCACCAACTACAACCCCTCCCTCAAGACTCGAGTCATCATATCACAAGACACGTCCAAGAAGCAGTTCTCCCTGATGCTGAGCTCTGTGACCGCCGCGGAGACGGCTATTTATTACTGTGCGAGGATAAGTGGGGATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCAGCACCCACCAAGGCTTCGGATGTATTCCCCATCATATCAGGGTGCA +>AF262151 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACGTGCGCTGTCTCTGGTGTGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCCTTTGATCTCTGGGGCCAAGGTGCGCTGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262152 +CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTCACTGATTACTCCTGGACCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGGACAATCGATCATAATGGAGGCACCATCTACAACCCGTCCCTCAAGGGTCGAGTCACCCTTTCACTCGACGCGTCCAAGAATCAGTTCTCCCTGATGGTGACCTCTATGACCGCCGCGGATACGGCTGTTTATTACTGTGCGAGGATAACTGGGGATCGGGGCGCTTTT +>AF262153 +CAGGTGCAACTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGATACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAGTCATAGTGGAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGTGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262154 +CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACCCGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262155 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCCGGTGTGTCCTTCAGTGGATACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAGGGGGCTGGAGTGGATTGGTGAAATCACTCACAGTGGCTCCACCATCAACAACCCGTCCCTCCAGAGTCGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGGGGAGAACTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGC +>AF262156 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCTGGTGTGTCCTTCAGTGAGTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGATCCACCATCAACAACCCGTCCCTCCAGAGTCGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTGTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTATTGTGTGAGGAGAAGTGGGGATCGGGGTGACTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262157 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGTCTATGGTGTGTCCTTCAATGATTACCACTGGACCTGGATCCGCCAGCCCCCCGGCAAGGGGCTGGAGTGGATTGGGGAAATCAATCAAAGTGGAAGCACCAATTACAGCCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAG +>AF262158 +CAGGTCCTTCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGCTGCAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGAATCGGGGTGCCTTTGATATCTGGGGCCAAGGGTCAGTGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262159 +CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCGCTCATAGTGGAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGT +>AF262160 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGCGTCCTTCAGTGGTTACTACTGGACTTGGATCCGTCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGTTGAAGACAATCATCGTGGGTCCACCATTAACAACCCGTCCCTTAAGAGTCGAGCCACCACATCACTTGACACGTCCAAGAATGAGTTCTCCCTTATCCTGGCTTCTGTGACCGCCGCGGACACGGCTGGGTATTACTGTGTGAGGATTACTGGGAATCGGGGTGCTATTGATATCTGGTGCCAAGGGACAATGGTCACCGACTCCTTAAGACCCACCACGGCTCCGGATTTGGTCCCCATCATATCACGGTTC +>AF262161 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCAGTGGTTACTACTGGAGCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAGGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTGGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262162 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGATCCACCGTCATCAACCCGTCCCTCCAGAGTCGAGTCACTACATCAATTGACGCGGCCAAGAGTCAATTCTCCCTGGTGCTGACTTCTGCGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262163 +CAGGTGCAGCTGCTGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTCACTGATTACTCCTGGACCTGGATCCGCCAGCCCGCCGGAAAGGGGCTGGAGTGGATTGGGAAAATCGATCATGAAAGAGGCACCATCTACAACCCGTCCCTCGAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAACTCTCCTTGATGCTGAAGTCTATGACGGTCGCGGATATGGCTGTTTATTACTGTGCGAGGATCACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGT +>AF262164 +CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGCCCCTCAGTGATTACTCCTGGACTTGGATCCGACAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATACTGGAACCACCATGAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGTGGACACGGCTGTTTATTTCTGCGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTG +>AF262165 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGAACCACCATCACCAACCCGTCCCTCCAGAGTCGAGTCACCACATCACTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTG +>AF262166 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCCGTCTATGGTGTGTCCTTCAATGATTACCACTGGACCTGGATCCGCCAGCCCCCCGGCAAGGGGCTGGAGTGGATTGGAGAAATCGATCATCGTGGAACCACCATCTACAGCCCGTCCCTCAAGAGCCGAGTCACCATGTCAGTAGACACGGCCAAGAATCAGGTCTCCCTGAGGGTGACCTCTATGACCGCGGCGGACACGGCTGTATATTACTGTGCGAGGATAACTGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATC +>AF262167 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGCCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTTCTGGACTTGGATCCGTCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCGCTCATAGTGAAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACACGGCCAACAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCACCGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCGCCATCATATCAGGGTG +>AF262168 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACTGATTACCACTGGACGTGGATCCGCCAGCCCCCAGGCAAGGGCCTGGAGTGGATTGGAGAAATCGATCATCGTGGAGACACCATCTACAGCCCGTCCCTCAAGAGTCGAGTCACCTTATCAGTAGACACGGCCAAGAATCAGGTCTCCCTAATGGTGACCTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGCGAGGATAACTGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCGCCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTG +>AF262169 +CAGGTGCAGATACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGTCTATGGAGTGACCTTCAATGATTACCACTGGACCTGGATCCGCCAGCCCCCAGGCAAGGGACTGGAGTGGATTGGAGAAACCGATCATCGTGGAGACACCATCTACAGCCCGTCCCTCAAGAGTCGAGTCACCATGTCAGTAGACACGGCCAACAATGAGGTCTCCCTGATGGTGACCTCTGTGACCGCGGCGGACACGGCTGTATATTACTGTGCGAGGATAAATGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATAT +>AF262170 +CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGCACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACCTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTG +>AF262171 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTAGTTACTTCTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGCAGTGGATTGGTGAAATCAGTCCTAGTGGAACTACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAATTGACACGTCCAAGAATCAGTTCTCCCTGGTCCTGACTTCTGTGACCGCCGCGGACATGGCTGTGTATTATTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAAGGG +>AF262172 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGGTACTTCTGGACTTGGATCCGGCAGTCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACCCATAGTGGATCCACCATCAACAACCCGTCCCTCCAGAGTCGAGTCATCACATCAATTGACGCGGCCAAGAATCAATTGTCCCTGGTTCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTATTGTGTGAGGAGAAGTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTG +>AF262173 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGCAGACCCTGTCCCTCACTTGCGCTGTCTATGGTGGGTCCTTCAGTGGTTACTACTGGAGCTGGATCCGCCAGCCCCCAGGGAAGGGACTGGAGTGGGTTGGGTATATCCACTACAGTGGGAGCACCAACTACAACCCCTCCCTCACGACTCGAGTCACCATATCACAAGACACGTCCAAGAATCAGTTCTCCCTGATGCTGAGCTCTGTGACCGCCGCGGAAACGGCTATTTATTACTGTGCGAGGATAAGTGGGGATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAAGGG +>AF262174 +CAGGTGCAACTACAGCAGTGGGGCGCAGAACTGTTGAAGCCTTCGCAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCTATGATAACAACTGGAACTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAAATCAATCATAGCGGAAGCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAATAGACACGTCCAAGAACCAGTTCTCCCTGAGGTTGAATTCTGTGACCGCCGCGGACACGGCTTTGTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTG +>AF262175 +CAGGTGCAGCTACAGCTGTGGGGCGCAGGACTGGTAAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTAACGTCTGGACTTGGATCCGCAAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCTCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGGGTCGAGTCACCACATCCCTTGACGCCGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTACTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGT +>AF262176 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAACCAGCTTCAACAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCTTTTGACCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGGT +>AF262177 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCGCTCATAGTGGAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGAAGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262178 +CAGGTGCAGCTACAGCAGTGGGGCGCAGCACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCAATCATAGTGGCACCACCATCAACAACCCGGCCCTCAAGAGTCGGGTCGCCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTG +>AF262179 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCCTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGCAAGGGGCTGGAGTGGATTGGTGAAATAAGTCATAGTGGACCCACCATCAACAACCCGTCCCTCCAGAGTCGAGTCACCACATCAGTTGACGCGGCCACGAATCAATTCTCCCTGCTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAGAGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAAGGGT +>AF262180 +CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTGACTGATTACTCCTGGACCTGGATCCGCCAGCCCCCAGGCGAGGGGCTGGAGTGGATTGGGAAAATCGATCATAATAGAGGCACCATCTACAACCCGTCCCTCAAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAATTCTCCCTGATGCTGAGCTCTATGACCGTCGCGGATACGGCTGTATATTACTGTGCGAGGATAACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATGTCAGGGTG +>AF262181 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCTTCGGAAGACCCTGTCCCTCTCCTGCGGTGTCTCTGGTGTGTCCTTCAGTGATTACGTCTGGTCTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGCTGACATCACTCATAGTGGAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCGCGTCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGAGTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCTATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTG +>AF262182 +CAGGTGCAACTACAGCAGTGGGGCCCAGGGCTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTGAGTGATTACTCCTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAACCCTGGCGGAACCACCATCAACAACCCGTCCCTCAGGAGTCGAGTCACCACATCAGTGGACACGTCCAGCAATCAGTTCTCCCTCATAATGACTTCTGTGACCGCCGCGGACACGGCTCTATATTATTGTGTGAGGAAGACTGGGGATCGGGGTGCTTTTGATATCTGGGGCCGAGGGACAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTG +>AF262183 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAAGCAACATCAACAACCCGTCCCTCGAGAGTCGAGTCACCACACCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGTGTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATG +>AF262184 +CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTGTCTGGTGTGTCCTTCAGTGATTACTCCTGGACTTGGATCCGACAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAATTCACTCATAGTGGAACCACCATGAGCAGCCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTACTACTGCGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGCCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGG +>AF262185 +CAGGTGCAGTTATAGTAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATCACTACTGGACTTGGATCCCGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAGCCAGCATCAACAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACCTCCAAGAGTCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTCTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCATTTGATCTATGGGGCCAAGGGACAATGATCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTG +>AF262186 +CAGGTGCAGCTACAGCTGTGGGGCGCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTAACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCTCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACACGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGG +>AF262187 +CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTCCTTCTGGACTTGGATCCGGCAGCCCCCCGGAAAGGGGCTGGAGTGGATTGGTGACATCTCTCATGCTGGATCCACCATCAACAACCCGTCCCTCCGGAGTCGAGTCACCACATCACTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262188 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCAGTAATTACTACTGGACTTGGATCCGCCAGCCCCCAGGGAAGGGGCTGCAGTGGATTGGGGAAATCAATCAAGGTGGAATCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGCCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGTGGCCAAGGGGCGATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAAGGGTGC +>AF262189 +CAGGTGCAGCTACAGCAGTGGGGCAGAGGACTGTTGGAGCCTTCGGAGACCCTGTCCCTCACCTGTGCTGTCTATGGTGGGTCCTTCGGTGGTTACTACTGGACCTGGATCCGCCAGGCCCCCGGGAAGGGTCTGGAGTGGATTGGGGACATTAGTCATAGTGGAGGCACCAGGTACAACCCGTTGCTCAGGAGTCGACTCACCATAACATTAGACACCAGCAATCAGTTCTCCCTGAAGCTGAACTCTGTGACCGCCGCGGACACGGCTCTCTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCAAGA +>AF262190 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTTTCTGGTGTGTCCTTCAGTGATTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGAGCCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCAGTGACCGCCGCGGACACGGCTATTTATTACTGCGTGACGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262191 +CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTCACTGATTACTCCTGGACCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGAAAAATCGATCATAATAGAGGCACCATCTACAACCCGTCCCTCAAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAATTCTCCCTGATGCTGAGGTCTATGACCGTCGCGGAAACGGCTGTTTATTACTGTGCGAGGATAACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATGTCAGGGTGCA +>AF262192 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAAGCAACATCAATAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGTGTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262193 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCCGCGCTGTCTCTGGTGTGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262194 +CAGGTGCAGCTACACTTGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATAACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCTCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCCATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262195 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGAGTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262196 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTTGGTAAGCCTTCGGACACCCTGTCCCTCACCCGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGAACCACCATCATCAACCCGTCCCTCCAGAGTCGACTCTCCGCATCACTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262197 +CAGGTGCAGCTACAGCAGTGGGGCGCGGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGTAATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAAGCAACATCAACAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGAAGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGTGTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262198 +CAGGTGCAGCTGCAGCAGTTGGGCGCAGGACTGTTGAAGCCTCCGGAGACCCTGTCCCTCTCCTGCACTGTGTATGGTGGGTCCTTCAGTGGTTACTACTGGAACTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAATATCCATCATAGTGGAAGCACCAACTACACCCCGTCCCTCAGGAGTCGAGTCACCATATCAATAGACACGTCCAAGAATCAGTTCTCCCTGATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAAGGGTGC +>AF262199 +CAGGTGCAGCTACAGCAGTGGGGCGCAGCACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCAATCATAGTGGCACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCGCCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACACTGGTCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262200 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCCGGTGTGTCCTTCAGTGGATACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCACAGTGGCTCCACCATCAACAACCCGTCCCTCCAGAGACGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTCTATTACTGTGTGAGGAGAACTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAGGGTGCA +>AF262201 +CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCCCCATCATATCAAGGGTG diff --git a/test/PW57_full.txt b/test/PW57_full.txt new file mode 100644 index 0000000..e02058e --- /dev/null +++ b/test/PW57_full.txt @@ -0,0 +1,58 @@ +Index Name Subtype Simplified Subtype Support Recombination Support Intra-subtype Support Reading Frame Breakpoints Sequence FW1 FW1_AA CDR1 CDR1_AA FW2 FW2_AA CDR2 CDR2_AA FW3 FW3_AA CDR3 CDR3_AA JUNCTION JUNCTION_AA D_ALLELE D D_AA J J_AA Mapped Read +1 AF262145 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.9049402631937598 1 0 0 304(303-305) CAGGTGCAGCTCCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTAACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCTCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAGACTGGGGATTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTCCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGGTAACGTC SGVSFSGNV TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCTCTCATAGTGGAACCACC ISHSGTT ATCACCAGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGT ITSPSLQSRVTTSLDAAKNQFSLVLTSVTAADTALYYC GTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAGCTCCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GGTAACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATC---------TCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +2 AF262146 V4-34,J-ancestral inter-subtype recombinant J-ancestral,V4-34 recombinant 0.3154510133418344 1 0 0 305(302-308) CAGGTGCAGCTACACCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGCAAGGGGCTGCAATGGATTGGTGAAATCACTCATAGTGGAACCACCATCAACAACCCCTCCCTCCAGAGTCGAGTCAGCACATCAGTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTATATTACTGTGTGAGGAAAACTGGGGATTTTGATCTCTGGGGCCAAGGTGCGCTGGTCACCGTCTCTTCA CAGGTGCAGCTACACCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLHQWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGGTTACTTC SGVSFSGYF TGGACTTGGATCCGGCAGCCCCCAGGCAAGGGGCTGCAATGGATTGGTGAA WTWIRQPPGKGLQWIGE ATCACTCATAGTGGAACCACCATCAACAAC ITHSGTTINN CCCTCCCTCCAGAGTCGAGTCAGCACATCAGTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTATATTACTGT PSLQSRVSTSVDAAKNQFSLVLTSVTAADTAVYYC GTGAGGAAAACTGGGGATCGGGGTGCCTTTGATCTCTGGGGCCAAGGTGCGCTGGTCACCGTCTCTTCA VRKTGDRGAFDLWGQGALVTVSS 0 0 CAGGTGCAGCTACACCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGCAAGGGGCTGCAATGGATTGGTGAAATCACTCATAGTGGAACCACCATCAACAAC---------CCCTCCCTCCAGAGTCGAGTCAGCACATCAGTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTATATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATCTCTGGGGCCAAGGTGCGCTGGTCACCGTCTCTTCA +3 AF262147 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.9026172362782274 1 0 0 304(303-305) CAGGTGCAGTTACACCAGTGGGGCGCAGGACTGGTGAAGCCTCCGGAGACCCTGTCCCTCACTTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCAATTACAGTGGCACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCGCCACATCAGCTGGCACGTCCAAGAATCAGTTCTCCCTTATGTTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAAACTGGGGATTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGTTACACCAGTGGGGCGCAGGACTGGTGAAGCCTCCGGAGACCCTGTCCCTCACTTGCGCTGTC QVQLHQWGAGLVKPPETLSLTCAV TCTGGTGTGTCCTTCAGTGATTACTAC SGVSFSDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE GTCAATTACAGTGGCACCACCATCAACAAC VNYSGTTINN CCGTCCCTCAAGAGTCGAGTCGCCACATCAGCTGGCACGTCCAAGAATCAGTTCTCCCTTATGTTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGT PSLKSRVATSAGTSKNQFSLMLTSVTAADTALYYC GTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAGTTACACCAGTGGGGCGCAGGACTGGTGAAGCCTCCGGAGACCCTGTCCCTCACTTGCGCTGTCTCTGGTGTGTCCTTCAGT------GATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCAATTACAGTGGCACCACCATCAACAAC---------CCGTCCCTCAAGAGTCGAGTCGCCACATCAGCTGGCACGTCCAAGAATCAGTTCTCCCTTATGTTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +4 AF262148 V4-34,J-ancestral inter-subtype recombinant J-ancestral,V4-34 recombinant 0.7518736591798839 1 0 0 305(301-309) CAGGTGCGGCTACAACAATGGGGCGCAGGACTCTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGGTGTCTTCGGTGTGTCCCTCAGTGGTTACTACTGGACCTGGATCCGCCAGCCCCCAAACAAGGGGCTAGAGTGGATAGGGGAAATCACTCAGACTGGAGGCACCATCTACAACCCGTCCCTCCAGAGTCGAGTCACCATTTCAGTTGCCACGTCCAAGGCACAGTTGTCCCTGAAGATGACCTCTGTGACCGCCGCGGACACGGCTACTTATTTCTGTGCGCGGATGACTGTGGATTTTGATCTCTGGGGCCAGGGGACACCGGTCACCGTCTCCTCA CAGGTGCGGCTACAACAATGGGGCGCAGGACTCTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGGT QVRLQQWGAGLLKPSETLSLTCG GTCTTCGGTGTGTCCCTCAGTGGTTACTAC VFGVSLSGYY TGGACCTGGATCCGCCAGCCCCCAAACAAGGGGCTAGAGTGGATAGGGGAA WTWIRQPPNKGLEWIGE ATCACTCAGACTGGAGGCACC ITQTGGT ATCTACAACCCGTCCCTCCAGAGTCGAGTCACCATTTCAGTTGCCACGTCCAAGGCACAGTTGTCCCTGAAGATGACCTCTGTGACCGCCGCGGACACGGCTACTTATTTCTGT IYNPSLQSRVTISVATSKAQLSLKMTSVTAADTATYFC GCGCGGATGACTGTGGATCGGCGTACTTTTGATCTCTGGGGCCAGGGGACACCGGTCACCGTCTCCTCA ARMTVDRRTFDLWGQGTPVTVSS 0 0 CAGGTGCGGCTACAACAATGGGGCGCAGGACTCTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGGT------GTCTTCGGTGTGTCCCTCAGTGGTTACTACTGGACCTGGATCCGCCAGCCCCCAAACAAGGGGCTAGAGTGGATAGGGGAAATCACTCAGACTGGAGGC---------ACCATCTACAACCCGTCCCTCCAGAGTCGAGTCACCATTTCAGTTGCCACGTCCAAGGCACAGTTGTCCCTGAAGATGACCTCTGTGACCGCCGCGGACACGGCTACTTATTTCTGTGCGCGGATGACTGTGGATCGGCGTACTTTTGATCTCTGGGGCCAGGGGACACCGGTCACCGTCTCCTCA +5 AF262149 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.8562311520890851 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGATCCACCGTCATCAACCCGTCCCTCCAGAATCGAGTCACTACATCAATTGACGCGGCCAAGAGTCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATTTTGATATCTGGGGCCAGGGGGCACTGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGGTTACTTC SGVSFSGYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCACTCATAGTGGATCCACC ITHSGST GTCATCAACCCGTCCCTCCAGAATCGAGTCACTACATCAATTGACGCGGCCAAGAGTCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGT VINPSLQNRVTTSIDAAKSQFSLVLTSVTAADTAVYYC GTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAGGGGGCACTGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGALVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGATCC---------ACCGTCATCAACCCGTCCCTCCAGAATCGAGTCACTACATCAATTGACGCGGCCAAGAGTCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAGGGGGCACTGGTCACCGTCTCTTCA +6 AF262150 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.6127666576913439 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTGCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCAGTGTGTACATCTGGACCTGGATCCGCCAGCCCCCAGGGAAGGGTCTGGAGTGGATTGGGGAAATCAGTCATGCTGGAAGCACCAACTACAACCCCTCCCTCAAGACTCGAGTCATCATATCACAAGACACGTCCAAGAAGCAGTTCTCCCTGATGCTGAGCTCTGTGACCGCCGCGGAGACGGCTATTTATTACTGTGCGAGGATAAGTGGGGATTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTGCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLLKPAETLSLTCAV TATGGTGGGTCCTTCAGTGTGTACATC YGGSFSVYI TGGACCTGGATCCGCCAGCCCCCAGGGAAGGGTCTGGAGTGGATTGGGGAA WTWIRQPPGKGLEWIGE ATCAGTCATGCTGGAAGCACC ISHAGST AACTACAACCCCTCCCTCAAGACTCGAGTCATCATATCACAAGACACGTCCAAGAAGCAGTTCTCCCTGATGCTGAGCTCTGTGACCGCCGCGGAGACGGCTATTTATTACTGT NYNPSLKTRVIISQDTSKKQFSLMLSSVTAAETAIYYC GCGAGGATAAGTGGGGATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA ARISGDRGAFDIWGQGTMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTGCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCAGT------GTGTACATCTGGACCTGGATCCGCCAGCCCCCAGGGAAGGGTCTGGAGTGGATTGGGGAAATC---------AGTCATGCTGGAAGCACCAACTACAACCCCTCCCTCAAGACTCGAGTCATCATATCACAAGACACGTCCAAGAAGCAGTTCTCCCTGATGCTGAGCTCTGTGACCGCCGCGGAGACGGCTATTTATTACTGTGCGAGGATAAGTGGGGATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA +7 AF262151 V4-34,J-ancestral inter-subtype recombinant J-ancestral,V4-34 recombinant 0.2720369236825371 1 0 0 305(304-306) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACGTGCGCTGTCTCTGGTGTGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATTTTGATCTCTGGGGCCAAGGTGCGCTGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACGTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCACTGATTACTAC SGVSFTDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCAATCATAGTGGTACCACCATCAACAAC INHSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLKSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAATACTGGGAATCGGGGTGCCTTTGATCTCTGGGGCCAAGGTGCGCTGGTCACCGTCTCTTCA VRNTGNRGAFDLWGQGALVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACGTGCGCTGTCTCTGGTGTGTCCTTCACT------GATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAAC---------CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCCTTTGATCTCTGGGGCCAAGGTGCGCTGGTCACCGTCTCTTCA +9 AF262153 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.8977427997799466 1 0 0 304(301-307) CAGGTGCAACTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGATACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAGTCATAGTGGAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGTGATTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAACTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGGATACTTC SGVSFSGYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCAGTCATAGTGGAACCACCATCAACAAC ISHSGTTINN CCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGC PSLLSRVTTSVDAAKNQFSLALTSVTDADTAVYYC GTGAGGAAAACTGGTGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAACTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GGATACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAGTCATAGTGGAACCACCATCAACAAC---------CCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGTGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +8 AF262152 V4-34,J-ancestral inter-subtype recombinant J-ancestral,V4-34 recombinant 0.4227266235461844 1 0 0 278(266-290) CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTCACTGATTACTCCTGGACCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGGACAATCGATCATAATGGAGGCACCATCTACAACCCGTCCCTCAAGGGTCGAGTCACCCTTTCACTCGACGCGTCCAAGAATCAGTTCTCCCTGATGGTGACCTCTATGACCGCCGCGGATACGGCTGTTTATTACTGTGCGAGGATAACTGGGGATCGGGGCGCTTTT CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQEWGAGLVKPSETLSLTCAV TATGGTGTCTCCTTCACTGATTACTCC YGVSFTDYS TGGACCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGGACA WTWIRQPPGKGLEWIGT ATCGATCATAATGGAGGCACC IDHNGGT ATCTACAACCCGTCCCTCAAGGGTCGAGTCACCCTTTCACTCGACGCGTCCAAGAATCAGTTCTCCCTGATGGTGACCTCTATGACCGCCGCGGATACGGCTGTTTATTACTGT IYNPSLKGRVTLSLDASKNQFSLMVTSMTAADTAVYYC GCGAGGATAACTGGGGATCGGGGCGCTTTT ARITGDRGAF 0 0 CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTCACT------GATTACTCCTGGACCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGGACAATCGATCATAATGGAGGC---------ACCATCTACAACCCGTCCCTCAAGGGTCGAGTCACCCTTTCACTCGACGCGTCCAAGAATCAGTTCTCCCTGATGGTGACCTCTATGACCGCCGCGGATACGGCTGTTTATTACTGTGCGAGGATAACTGGGGATCGGGGCGCTTTT +11 AF262155 V4-34,J3 inter-subtype recombinant J3,V4-34 recombinant 0.4918843847177534 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCCGGTGTGTCCTTCAGTGGATACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAGGGGGCTGGAGTGGATTGGTGAAATCACTCACAGTGGCTCCACCATCAACAACCCGTCCCTCCAGAGTCGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGGGGAGAACTGGGGATTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLLKPSETLSLTCAV TCCGGTGTGTCCTTCAGTGGATACTTC SGVSFSGYF TGGACTTGGATCCGGCAGCCCCCAGGAAGGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGRGLEWIGE ATCACTCACAGTGGCTCCACCATCAACAAC ITHSGSTINN CCGTCCCTCCAGAGTCGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGT PSLQSRVITSVDAAKNQFSLVLTSVTAADTAVYYC GTGGGGAGAACTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VGRTGDRGAFDVWGQGAMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCCGGTGTGTCCTTCAGT------GGATACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAGGGGGCTGGAGTGGATTGGTGAAATCACTCACAGTGGCTCCACCATCAACAAC---------CCGTCCCTCCAGAGTCGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGGGGAGAACTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +10 AF262154 V4-34,J-ancestral inter-subtype recombinant J-ancestral,V4-34 recombinant 0.4954586970008103 1 0 0 303(302-304) CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACCCGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATTTTGATATCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLLKPSETLSLTCAV TCTGGTGTGTCCTTCACTGATTACTAC SGVSFTDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCAATCATAGTGGTACCACCATCAACAAC INHSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACCCGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLKSRVTTSVDPSNNQFSLMLTSVTAADTAVYYC GTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA VRNTGNRGAFDIWGQGTTVTVSS 0 0 CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACT------GATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAAC---------CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACCCGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA +12 AF262156 V4-34,J3 inter-subtype recombinant J3,V4-34 recombinant 0.4920898713638354 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCTGGTGTGTCCTTCAGTGAGTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGATCCACCATCAACAACCCGTCCCTCCAGAGTCGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTGTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTATTGTGTGAGGAGAAGTGGGGATTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTC QVQLQQWGAGLVKPSETLSLSCAV TCTGGTGTGTCCTTCAGTGAGTACTTC SGVSFSEYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCACTCATAGTGGATCCACCATCAACAAC ITHSGSTINN CCGTCCCTCCAGAGTCGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTGTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTATTGT PSLQSRVITSVDAAKNQLSLVLTSVTAADTAVYYC GTGAGGAGAAGTGGGGATCGGGGTGACTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRRSGDRGDFDVWGQGAMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GAGTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGATCCACCATCAACAAC---------CCGTCCCTCCAGAGTCGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTGTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTATTGTGTGAGGAGAAGTGGGGATCGGGGTGACTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +13 AF262157 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.6654089501423407 1 0 0 310(309-311) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGTCTATGGTGTGTCCTTCAATGATTACCACTGGACCTGGATCCGCCAGCCCCCCGGCAAGGGGCTGGAGTGGATTGGGGAAATCAATCAAAGTGGAAGCACCAATTACAGCCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLLKPSETLSLTCAV TCTGTCTATGGTGTGTCCTTCAATGATTACCAC SVYGVSFNDYH TGGACCTGGATCCGCCAGCCCCCCGGCAAGGGGCTGGAGTGGATTGGGGAA WTWIRQPPGKGLEWIGE ATCAATCAAAGTGGAAGCACC INQSGST AATTACAGCCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT NYSPSLKSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA VRNTGNRGAFDIWGQGTMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGTCTATGGTGTGTCCTTCAATGATTACCACTGGACCTGGATCCGCCAGCCCCCCGGCAAGGGGCTGGAGTGGATTGGGGAAATCAATCAAAGTGGAAGC---------ACCAATTACAGCCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA +14 AF262158 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.8807627933195927 1 0 0 304(303-305) CAGGTCCTTCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGCTGCAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGAATTTTGATATCTGGGGCCAAGGGTCAGTGGTCACCGTCTCTTCA CAGGTCCTTCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVLLQQWGAGLVKPSETLSLTCAV TCTGGTATGTCCTTCACTGATTACTAC SGMSFTDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGCTGCA WTWIRQPPGKGLEWIAA ATCAATCATAGTGGTACCACCATCAACAAC INHSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGC PSLKSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAAAACTGGGAATCGGGGTGCCTTTGATATCTGGGGCCAAGGGTCAGTGGTCACCGTCTCTTCA VRKTGNRGAFDIWGQGSVVTVSS 0 0 CAGGTCCTTCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCACT------GATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGCTGCAATCAATCATAGTGGTACCACCATCAACAAC---------CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGAATCGGGGTGCCTTTGATATCTGGGGCCAAGGGTCAGTGGTCACCGTCTCTTCA +15 AF262159 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.904881561224766 1 0 0 304(303-305) CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCGCTCATAGTGGAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGGATTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGATTACTTC SGVSFSDYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCGCTCATAGTGGAACCACC IAHSGTT ATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGC INNPSLLSRVTTSVDAAKNQFSLALTSVTDADTAVYYC GTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GATTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATC---------GCTCATAGTGGAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +16 AF262160 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.5479318801388643 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGCGTCCTTCAGTGGTTACTACTGGACTTGGATCCGTCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGTTGAAGACAATCATCGTGGGTCCACCATTAACAACCCGTCCCTTAAGAGTCGAGCCACCACATCACTTGACACGTCCAAGAATGAGTTCTCCCTTATCCTGGCTTCTGTGACCGCCGCGGACACGGCTGGGTATTACTGTGTGAGGATTACTGGGAATATTGATATCTGGTGCCAAGGGACAATGGTCACCGACTCCTTA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLLKPSGTLSLTCAV TCTGGTGCGTCCTTCAGTGGTTACTAC SGASFSGYY TGGACTTGGATCCGTCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGTTGAA WTWIRQPPGKGLEWIVE GACAATCATCGTGGGTCCACCATTAACAAC DNHRGSTINN CCGTCCCTTAAGAGTCGAGCCACCACATCACTTGACACGTCCAAGAATGAGTTCTCCCTTATCCTGGCTTCTGTGACCGCCGCGGACACGGCTGGGTATTACTGT PSLKSRATTSLDTSKNEFSLILASVTAADTAGYYC GTGAGGATTACTGGGAATCGGGGTGCTATTGATATCTGGTGCCAAGGGACAATGGTCACCGACTCCTTA VRITGNRGAIDIWCQGTMVTDSL 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGCGTCCTTCAGT------GGTTACTACTGGACTTGGATCCGTCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGTTGAAGACAATCATCGTGGGTCCACCATTAACAAC---------CCGTCCCTTAAGAGTCGAGCCACCACATCACTTGACACGTCCAAGAATGAGTTCTCCCTTATCCTGGCTTCTGTGACCGCCGCGGACACGGCTGGGTATTACTGTGTGAGGATTACTGGGAATCGGGGTGCTATTGATATCTGGTGCCAAGGGACAATGGTCACCGACTCCTTA +17 AF262161 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.430742819799154 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCAGTGGTTACTACTGGAGCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAGGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATTTGGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLLKPSETLSLTCAV TATGGTGGGTCCTTCAGTGGTTACTAC YGGSFSGYY TGGAGCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WSWIRQPPGKGLEWIGE ATCAATCATAGTGGTACCACCATCAACAAC INHSGTTINN CCGTCCCTCAGGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLRSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAATACTGGGAATCGGGGTGCTTTGGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA VRNTGNRGALDIWGQGTMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCAGT------GGTTACTACTGGAGCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAAC---------CCGTCCCTCAGGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTGGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA +18 AF262162 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.9059529386373403 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGATCCACCGTCATCAACCCGTCCCTCCAGAGTCGAGTCACTACATCAATTGACGCGGCCAAGAGTCAATTCTCCCTGGTGCTGACTTCTGCGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGGTTACTTC SGVSFSGYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCACTCATAGTGGATCCACC ITHSGST GTCATCAACCCGTCCCTCCAGAGTCGAGTCACTACATCAATTGACGCGGCCAAGAGTCAATTCTCCCTGGTGCTGACTTCTGCGACCGCCGCGGACACGGCTGTTTATTACTGT VINPSLQSRVTTSIDAAKSQFSLVLTSATAADTAVYYC GTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGATCC---------ACCGTCATCAACCCGTCCCTCCAGAGTCGAGTCACTACATCAATTGACGCGGCCAAGAGTCAATTCTCCCTGGTGCTGACTTCTGCGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +19 AF262163 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.884256469042549 1 0 0 304(303-305) CAGGTGCAGCTGCTGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTCACTGATTACTCCTGGACCTGGATCCGCCAGCCCGCCGGAAAGGGGCTGGAGTGGATTGGGAAAATCGATCATGAAAGAGGCACCATCTACAACCCGTCCCTCGAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAACTCTCCTTGATGCTGAAGTCTATGACGGTCGCGGATATGGCTGTTTATTACTGTGCGAGGATCACTGGGGATTTTGATACCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTGCTGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLLEWGAGLVKPSETLSLTCAV TATGGTGTCTCCTTCACTGATTACTCC YGVSFTDYS TGGACCTGGATCCGCCAGCCCGCCGGAAAGGGGCTGGAGTGGATTGGGAAA WTWIRQPAGKGLEWIGK ATCGATCATGAAAGAGGCACC IDHERGT ATCTACAACCCGTCCCTCGAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAACTCTCCTTGATGCTGAAGTCTATGACGGTCGCGGATATGGCTGTTTATTACTGT IYNPSLESRVTISLDTSKNQLSLMLKSMTVADMAVYYC GCGAGGATCACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA ARITGDRGAFDTWGQGAMVTVSS 0 0 CAGGTGCAGCTGCTGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTCACT------GATTACTCCTGGACCTGGATCCGCCAGCCCGCCGGAAAGGGGCTGGAGTGGATTGGGAAAATCGATCATGAAAGAGGC---------ACCATCTACAACCCGTCCCTCGAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAACTCTCCTTGATGCTGAAGTCTATGACGGTCGCGGATATGGCTGTTTATTACTGTGCGAGGATCACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +20 AF262164 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.9034426303036436 1 0 0 304(303-305) CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGCCCCTCAGTGATTACTCCTGGACTTGGATCCGACAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATACTGGAACCACCATGAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGTGGACACGGCTGTTTATTTCTGCGTGAGGAAGACTGGGGATTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTGTGCCCCTCAGTGATTACTCC SGVPLSDYS TGGACTTGGATCCGACAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCACTCATACTGGAACCACCATGAACAAC ITHTGTTMNN CCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGTGGACACGGCTGTTTATTTCTGC PSLLSRVTTSVDAAKNQFSLALTSVTAVDTAVYFC GTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGCCCCTCAGT------GATTACTCCTGGACTTGGATCCGACAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATACTGGAACCACCATGAACAAC---------CCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGTGGACACGGCTGTTTATTTCTGCGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +21 AF262165 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.9048073314197385 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGAACCACCATCACCAACCCGTCCCTCCAGAGTCGAGTCACCACATCACTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAGACTGGGGATTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGGTTACGTC SGVSFSGYV TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCACTCATAGTGGAACCACC ITHSGTT ATCACCAACCCGTCCCTCCAGAGTCGAGTCACCACATCACTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGT ITNPSLQSRVTTSLDAAKNQFSLVLTSVTAADTAVYYC GTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GGTTACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATC---------ACTCATAGTGGAACCACCATCACCAACCCGTCCCTCCAGAGTCGAGTCACCACATCACTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +22 AF262166 V4-34,J3 inter-subtype recombinant J3,V4-34 recombinant 0.4941482625255137 1 0 0 310(309-311) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCCGTCTATGGTGTGTCCTTCAATGATTACCACTGGACCTGGATCCGCCAGCCCCCCGGCAAGGGGCTGGAGTGGATTGGAGAAATCGATCATCGTGGAACCACCATCTACAGCCCGTCCCTCAAGAGCCGAGTCACCATGTCAGTAGACACGGCCAAGAATCAGGTCTCCCTGAGGGTGACCTCTATGACCGCGGCGGACACGGCTGTATATTACTGTGCGAGGATAACTGGGGATTTTGATTTCTGGGGCCAAGGGACAAGGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLLKPSETLSLTCAV TCCGTCTATGGTGTGTCCTTCAATGATTACCAC SVYGVSFNDYH TGGACCTGGATCCGCCAGCCCCCCGGCAAGGGGCTGGAGTGGATTGGAGAA WTWIRQPPGKGLEWIGE ATCGATCATCGTGGAACCACC IDHRGTT ATCTACAGCCCGTCCCTCAAGAGCCGAGTCACCATGTCAGTAGACACGGCCAAGAATCAGGTCTCCCTGAGGGTGACCTCTATGACCGCGGCGGACACGGCTGTATATTACTGT IYSPSLKSRVTMSVDTAKNQVSLRVTSMTAADTAVYYC GCGAGGATAACTGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCACCGTCTCTTCA ARITGDRGAFDFWGQGTRVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCCGTCTATGGTGTGTCCTTCAATGATTACCACTGGACCTGGATCCGCCAGCCCCCCGGCAAGGGGCTGGAGTGGATTGGAGAAATCGATCATCGTGGAACC---------ACCATCTACAGCCCGTCCCTCAAGAGCCGAGTCACCATGTCAGTAGACACGGCCAAGAATCAGGTCTCCCTGAGGGTGACCTCTATGACCGCGGCGGACACGGCTGTATATTACTGTGCGAGGATAACTGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCACCGTCTCTTCA +23 AF262167 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.8536132263083249 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGCCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTTCTGGACTTGGATCCGTCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCGCTCATAGTGAAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACACGGCCAACAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATTTTGATATCTGGGGCCAAGGGGCACCGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGCCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLPLTCAV TCTGGTGTGTCCTTCAGTGATTACTTC SGVSFSDYF TGGACTTGGATCCGTCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCGCTCATAGTGAAACCACC IAHSETT ATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACACGGCCAACAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGT INNPSLLSRVTTSVDTANNQFSLALTSVTAADTAVYYC GTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCACCGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAPVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGCCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GATTACTTCTGGACTTGGATCCGTCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATC---------GCTCATAGTGAAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACACGGCCAACAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCACCGGTCACCGTCTCTTCA +24 AF262168 V4-34,J3 inter-subtype recombinant J3,V4-34 recombinant 0.4808944371046436 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACTGATTACCACTGGACGTGGATCCGCCAGCCCCCAGGCAAGGGCCTGGAGTGGATTGGAGAAATCGATCATCGTGGAGACACCATCTACAGCCCGTCCCTCAAGAGTCGAGTCACCTTATCAGTAGACACGGCCAAGAATCAGGTCTCCCTAATGGTGACCTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGCGAGGATAACTGGGGATTTTGATTTCTGGGGCCAAGGGACAAGGGTCGCCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCACTGATTACCAC SGVSFTDYH TGGACGTGGATCCGCCAGCCCCCAGGCAAGGGCCTGGAGTGGATTGGAGAA WTWIRQPPGKGLEWIGE ATCGATCATCGTGGAGACACC IDHRGDT ATCTACAGCCCGTCCCTCAAGAGTCGAGTCACCTTATCAGTAGACACGGCCAAGAATCAGGTCTCCCTAATGGTGACCTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGT IYSPSLKSRVTLSVDTAKNQVSLMVTSVTAADTALYYC GCGAGGATAACTGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCGCCGTCTCTTCA ARITGDRGAFDFWGQGTRVAVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACT------GATTACCACTGGACGTGGATCCGCCAGCCCCCAGGCAAGGGCCTGGAGTGGATTGGAGAAATCGATCATCGT---------GGAGACACCATCTACAGCCCGTCCCTCAAGAGTCGAGTCACCTTATCAGTAGACACGGCCAAGAATCAGGTCTCCCTAATGGTGACCTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGCGAGGATAACTGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCGCCGTCTCTTCA +25 AF262169 V4-34,J3 inter-subtype recombinant J3,V4-34 recombinant 0.4480106000522651 1 0 0 310(307-313) CAGGTGCAGATACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGTCTATGGAGTGACCTTCAATGATTACCACTGGACCTGGATCCGCCAGCCCCCAGGCAAGGGACTGGAGTGGATTGGAGAAACCGATCATCGTGGAGACACCATCTACAGCCCGTCCCTCAAGAGTCGAGTCACCATGTCAGTAGACACGGCCAACAATGAGGTCTCCCTGATGGTGACCTCTGTGACCGCGGCGGACACGGCTGTATATTACTGTGCGAGGATAAATGGGGATTTTGATTTCTGGGGCCAAGGGACAAGGGTCACCGTCTCCTCA CAGGTGCAGATACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQIQQWGAGLLKPSETLSLTCAV TCTGTCTATGGAGTGACCTTCAATGATTACCAC SVYGVTFNDYH TGGACCTGGATCCGCCAGCCCCCAGGCAAGGGACTGGAGTGGATTGGAGAA WTWIRQPPGKGLEWIGE ACCGATCATCGTGGAGACACC TDHRGDT ATCTACAGCCCGTCCCTCAAGAGTCGAGTCACCATGTCAGTAGACACGGCCAACAATGAGGTCTCCCTGATGGTGACCTCTGTGACCGCGGCGGACACGGCTGTATATTACTGT IYSPSLKSRVTMSVDTANNEVSLMVTSVTAADTAVYYC GCGAGGATAAATGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCACCGTCTCCTCA ARINGDRGAFDFWGQGTRVTVSS 0 0 CAGGTGCAGATACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGTCTATGGAGTGACCTTCAATGATTACCACTGGACCTGGATCCGCCAGCCCCCAGGCAAGGGACTGGAGTGGATTGGAGAAACCGATCATCGT---------GGAGACACCATCTACAGCCCGTCCCTCAAGAGTCGAGTCACCATGTCAGTAGACACGGCCAACAATGAGGTCTCCCTGATGGTGACCTCTGTGACCGCGGCGGACACGGCTGTATATTACTGTGCGAGGATAAATGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCACCGTCTCCTCA +26 AF262170 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.661913007695173 1 0 0 304(303-305) CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGCACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACCTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLLKPSETLSLTCAV TCTGGTGTGTCCTTCACTGATTACTAC SGVSFTDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCAATCATAGTGGCACCACCATCAACAAC INHSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACCTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLKSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA VRNTGNRGAFDIWGQGTMVTVSS 0 0 CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACT------GATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGCACCACCATCAACAAC---------CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACCTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA +27 AF262171 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.9036577226095724 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTAGTTACTTCTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGCAGTGGATTGGTGAAATCAGTCCTAGTGGAACTACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAATTGACACGTCCAAGAATCAGTTCTCCCTGGTCCTGACTTCTGTGACCGCCGCGGACATGGCTGTGTATTATTGTGTGAGGAAAACTGGGGATTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTAGTTACTTC SGVSFSSYF TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGCAGTGGATTGGTGAA WTWIRQPPGKGLQWIGE ATCAGTCCTAGTGGAACTACCATCAACAAC ISPSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAATTGACACGTCCAAGAATCAGTTCTCCCTGGTCCTGACTTCTGTGACCGCCGCGGACATGGCTGTGTATTATTGT PSLKSRVTTSIDTSKNQFSLVLTSVTAADMAVYYC GTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------AGTTACTTCTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGCAGTGGATTGGTGAAATCAGTCCTAGTGGAACTACCATCAACAAC---------CCGTCCCTCAAGAGTCGAGTCACCACATCAATTGACACGTCCAAGAATCAGTTCTCCCTGGTCCTGACTTCTGTGACCGCCGCGGACATGGCTGTGTATTATTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +28 AF262172 V4-34,J3 inter-subtype recombinant J3,V4-34 recombinant 0.4921945225987518 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGGTACTTCTGGACTTGGATCCGGCAGTCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACCCATAGTGGATCCACCATCAACAACCCGTCCCTCCAGAGTCGAGTCATCACATCAATTGACGCGGCCAAGAATCAATTGTCCCTGGTTCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTATTGTGTGAGGAGAAGTGGGGATTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTC QVQLQQWGAGLVKPSETLSLSCAV TCTGGTGTGTCCTTCAGTGGGTACTTC SGVSFSGYF TGGACTTGGATCCGGCAGTCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQSPGKGLEWIGE ATCACCCATAGTGGATCCACCATCAACAAC ITHSGSTINN CCGTCCCTCCAGAGTCGAGTCATCACATCAATTGACGCGGCCAAGAATCAATTGTCCCTGGTTCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTATTGT PSLQSRVITSIDAAKNQLSLVLTSVTAADTAVYYC GTGAGGAGAAGTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRRSGDRGAFDVWGQGAMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GGGTACTTCTGGACTTGGATCCGGCAGTCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACCCATAGTGGATCCACCATCAACAAC---------CCGTCCCTCCAGAGTCGAGTCATCACATCAATTGACGCGGCCAAGAATCAATTGTCCCTGGTTCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTATTGTGTGAGGAGAAGTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +29 AF262173 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.6195273034434422 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGCAGACCCTGTCCCTCACTTGCGCTGTCTATGGTGGGTCCTTCAGTGGTTACTACTGGAGCTGGATCCGCCAGCCCCCAGGGAAGGGACTGGAGTGGGTTGGGTATATCCACTACAGTGGGAGCACCAACTACAACCCCTCCCTCACGACTCGAGTCACCATATCACAAGACACGTCCAAGAATCAGTTCTCCCTGATGCTGAGCTCTGTGACCGCCGCGGAAACGGCTATTTATTACTGTGCGAGGATAAGTGGGGATTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGCAGACCCTGTCCCTCACTTGCGCTGTC QVQLQQWGAGLLKPSQTLSLTCAV TATGGTGGGTCCTTCAGTGGTTACTAC YGGSFSGYY TGGAGCTGGATCCGCCAGCCCCCAGGGAAGGGACTGGAGTGGGTTGGGTAT WSWIRQPPGKGLEWVGY ATCCACTACAGTGGGAGCACC IHYSGST AACTACAACCCCTCCCTCACGACTCGAGTCACCATATCACAAGACACGTCCAAGAATCAGTTCTCCCTGATGCTGAGCTCTGTGACCGCCGCGGAAACGGCTATTTATTACTGT NYNPSLTTRVTISQDTSKNQFSLMLSSVTAAETAIYYC GCGAGGATAAGTGGGGATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA ARISGDRGAFDIWGQGTMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGCAGACCCTGTCCCTCACTTGCGCTGTCTATGGTGGGTCCTTCAGT------GGTTACTACTGGAGCTGGATCCGCCAGCCCCCAGGGAAGGGACTGGAGTGGGTTGGGTATATCCACTACAGTGGGAGC---------ACCAACTACAACCCCTCCCTCACGACTCGAGTCACCATATCACAAGACACGTCCAAGAATCAGTTCTCCCTGATGCTGAGCTCTGTGACCGCCGCGGAAACGGCTATTTATTACTGTGCGAGGATAAGTGGGGATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA +30 AF262174 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.9005243932466099 1 0 0 304(303-305) CAGGTGCAACTACAGCAGTGGGGCGCAGAACTGTTGAAGCCTTCGCAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCTATGATAACAACTGGAACTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAAATCAATCATAGCGGAAGCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAATAGACACGTCCAAGAACCAGTTCTCCCTGAGGTTGAATTCTGTGACCGCCGCGGACACGGCTTTGTATTACTGTGTGAGGAAAACTGGGGATTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAACTACAGCAGTGGGGCGCAGAACTGTTGAAGCCTTCGCAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAELLKPSQTLSLTCAV TATGGTGGGTCCTTCTATGATAACAACTGG YGGSFYDNNW AACTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAA NWIRQPPGKGLEWIGE ATCAATCATAGCGGAAGCACC INHSGST AACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAATAGACACGTCCAAGAACCAGTTCTCCCTGAGGTTGAATTCTGTGACCGCCGCGGACACGGCTTTGTATTACTGT NYNPSLKSRVTISIDTSKNQFSLRLNSVTAADTALYYC GTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAACTACAGCAGTGGGGCGCAGAACTGTTGAAGCCTTCGCAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCTATGATAACAACTGG------AACTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAAATCAATCATAGCGGAAGC---------ACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAATAGACACGTCCAAGAACCAGTTCTCCCTGAGGTTGAATTCTGTGACCGCCGCGGACACGGCTTTGTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +31 AF262175 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.9053110391906587 1 0 0 304(303-305) CAGGTGCAGCTACAGCTGTGGGGCGCAGGACTGGTAAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTAACGTCTGGACTTGGATCCGCAAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCTCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGGGTCGAGTCACCACATCCCTTGACGCCGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTACTACTGTGTGAGGAAGACTGGGGATTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCTGTGGGGCGCAGGACTGGTAAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQLWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGGTAACGTC SGVSFSGNV TGGACTTGGATCCGCAAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRKPPGKGLEWIGE ATCTCTCATAGTGGAACCACC ISHSGTT ATCACCAGCCCGTCCCTCCAGGGTCGAGTCACCACATCCCTTGACGCCGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTACTACTGT ITSPSLQGRVTTSLDAAKNQFSLVLTSVTAADTALYYC GTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAGCTACAGCTGTGGGGCGCAGGACTGGTAAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GGTAACGTCTGGACTTGGATCCGCAAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATC---------TCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGGGTCGAGTCACCACATCCCTTGACGCCGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTACTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +32 AF262176 V4-34,J-ancestral inter-subtype recombinant J-ancestral,V4-34 recombinant 0.5333359472852913 1 0 0 303(301-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAACCAGCTTCAACAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAAAACTGGGAATTTTGACCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTATGTCCTTCAGTGATTACTAC SGMSFSDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCAATCATAGTGGAACCAGCTTCAACAAC INHSGTSFNN CCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLESRVTTSVDTSKNQFSLMLTSVTAADTAVYYC GTGAGGAAAACTGGGAATCGGGGTGCTTTTGACCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA VRKTGNRGAFDLWGQGTMITVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGT------GATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAACCAGCTTCAACAAC---------CCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCTTTTGACCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA +33 AF262177 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.9045259146031742 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCGCTCATAGTGGAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGAAGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGGATTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGATTACTTC SGVSFSDYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCGCTCATAGTGGAACCACC IAHSGTT ATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGAAGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGC INNPSLLSRVTTSVDAAKNQFSLKLTSVTDADTAVYYC GTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GATTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATC---------GCTCATAGTGGAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGAAGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +35 AF262179 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.8563697328662531 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCCTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGCAAGGGGCTGGAGTGGATTGGTGAAATAAGTCATAGTGGACCCACCATCAACAACCCGTCCCTCCAGAGTCGAGTCACCACATCAGTTGACGCGGCCACGAATCAATTCTCCCTGCTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATTTTGATATCTGGGGCCAAGGGGCAGAGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTGTGTCCCTCAGTGGTTACTTC SGVSLSGYF TGGACTTGGATCCGGCAGCCCCCAGGCAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATAAGTCATAGTGGACCCACCATCAACAAC ISHSGPTINN CCGTCCCTCCAGAGTCGAGTCACCACATCAGTTGACGCGGCCACGAATCAATTCTCCCTGCTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGT PSLQSRVTTSVDAATNQFSLLLTSVTAADTAVYYC GTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAGAGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAEVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCCTCAGT------GGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGCAAGGGGCTGGAGTGGATTGGTGAAATAAGTCATAGTGGACCCACCATCAACAAC---------CCGTCCCTCCAGAGTCGAGTCACCACATCAGTTGACGCGGCCACGAATCAATTCTCCCTGCTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAGAGGTCACCGTCTCTTCA +34 AF262178 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.6598377468305295 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGCACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCAATCATAGTGGCACCACCATCAACAACCCGGCCCTCAAGAGTCGGGTCGCCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGCACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAALVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGATTACTAC SGVSFSDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE GTCAATCATAGTGGCACCACCATCAACAAC VNHSGTTINN CCGGCCCTCAAGAGTCGGGTCGCCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PALKSRVATSVDTSKNQFSLMLTSVTAADTAVYYC GTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA VRNTGNRGAFDIWGQGTMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGCACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCAATCATAGTGGCACCACCATCAACAAC---------CCGGCCCTCAAGAGTCGGGTCGCCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA +37 AF262181 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.8560076211539973 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCTTCGGAAGACCCTGTCCCTCTCCTGCGGTGTCTCTGGTGTGTCCTTCAGTGATTACGTCTGGTCTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGCTGACATCACTCATAGTGGAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCGCGTCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGAGTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATTTTGATATCTGGGGCCAAGGGGCTATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCTTCGGAAGACCCTGTCCCTCTCCTGCGGTGTC QVQLQQWGAGLVKLRKTLSLSCGV TCTGGTGTGTCCTTCAGTGATTACGTC SGVSFSDYV TGGTCTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGCTGAC WSWIRQPPGKGLEWIAD ATCACTCATAGTGGAACCACCATCAACAAC ITHSGTTINN CCGTCCCTCCTGAGTCGAGTCACCGCGTCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGAGTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGT PSLLSRVTASVDAAKNQFSLALSSVTAADTAVYYC GTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCTATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCTTCGGAAGACCCTGTCCCTCTCCTGCGGTGTCTCTGGTGTGTCCTTCAGT------GATTACGTCTGGTCTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGCTGACATCACTCATAGTGGAACCACCATCAACAAC---------CCGTCCCTCCTGAGTCGAGTCACCGCGTCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGAGTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCTATGGTCACCGTCTCTTCA +36 AF262180 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.9037816189714839 1 0 0 304(303-305) CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTGACTGATTACTCCTGGACCTGGATCCGCCAGCCCCCAGGCGAGGGGCTGGAGTGGATTGGGAAAATCGATCATAATAGAGGCACCATCTACAACCCGTCCCTCAAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAATTCTCCCTGATGCTGAGCTCTATGACCGTCGCGGATACGGCTGTATATTACTGTGCGAGGATAACTGGGGATTTTGATACCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQEWGAGLVKPSETLSLTCAV TATGGTGTCTCCTTGACTGATTACTCC YGVSLTDYS TGGACCTGGATCCGCCAGCCCCCAGGCGAGGGGCTGGAGTGGATTGGGAAA WTWIRQPPGEGLEWIGK ATCGATCATAATAGAGGCACC IDHNRGT ATCTACAACCCGTCCCTCAAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAATTCTCCCTGATGCTGAGCTCTATGACCGTCGCGGATACGGCTGTATATTACTGT IYNPSLKSRVTISLDTSKNQFSLMLSSMTVADTAVYYC GCGAGGATAACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA ARITGDRGAFDTWGQGTMVTVSS 0 0 CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGT------GTCTCCTTGACTGATTACTCCTGGACCTGGATCCGCCAGCCCCCAGGCGAGGGGCTGGAGTGGATTGGGAAAATCGATCATAATAGAGGC---------ACCATCTACAACCCGTCCCTCAAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAATTCTCCCTGATGCTGAGCTCTATGACCGTCGCGGATACGGCTGTATATTACTGTGCGAGGATAACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA +38 AF262182 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.90309667533908 1 0 0 304(303-305) CAGGTGCAACTACAGCAGTGGGGCCCAGGGCTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTGAGTGATTACTCCTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAACCCTGGCGGAACCACCATCAACAACCCGTCCCTCAGGAGTCGAGTCACCACATCAGTGGACACGTCCAGCAATCAGTTCTCCCTCATAATGACTTCTGTGACCGCCGCGGACACGGCTCTATATTATTGTGTGAGGAAGACTGGGGATTTTGATATCTGGGGCCGAGGGACAATGGTCACCGTCTCTTCA CAGGTGCAACTACAGCAGTGGGGCCCAGGGCTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGPGLVKPSETLSLTCAV TCTGGTGTGTCCTTGAGTGATTACTCC SGVSLSDYS TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCAACCCTGGCGGAACCACCATCAACAAC INPGGTTINN CCGTCCCTCAGGAGTCGAGTCACCACATCAGTGGACACGTCCAGCAATCAGTTCTCCCTCATAATGACTTCTGTGACCGCCGCGGACACGGCTCTATATTATTGT PSLRSRVTTSVDTSSNQFSLIMTSVTAADTALYYC GTGAGGAAGACTGGGGATCGGGGTGCTTTTGATATCTGGGGCCGAGGGACAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGRGTMVTVSS 0 0 CAGGTGCAACTACAGCAGTGGGGCCCAGGGCTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTGAGT------GATTACTCCTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAACCCTGGCGGAACCACCATCAACAAC---------CCGTCCCTCAGGAGTCGAGTCACCACATCAGTGGACACGTCCAGCAATCAGTTCTCCCTCATAATGACTTCTGTGACCGCCGCGGACACGGCTCTATATTATTGTGTGAGGAAGACTGGGGATCGGGGTGCTTTTGATATCTGGGGCCGAGGGACAATGGTCACCGTCTCTTCA +39 AF262183 V4-34,J3 inter-subtype recombinant J3,V4-34 recombinant 0.7039420150165462 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAAGCAACATCAACAACCCGTCCCTCGAGAGTCGAGTCACCACACCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGTGTGAGGAAAACTGGGAATTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTATGTCCTTCAGTGATTACTAC SGMSFSDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCAATCATAGTGGAAGCAACATCAACAAC INHSGSNINN CCGTCCCTCGAGAGTCGAGTCACCACACCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGT PSLESRVTTPVDTSKNQFSLMLTSVTAADTAVYYC GTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA VRKTGNRGAFDLWGQGTMITVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGT------GATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAAGCAACATCAACAAC---------CCGTCCCTCGAGAGTCGAGTCACCACACCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGTGTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA +40 AF262184 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.8765431882724463 1 0 0 304(303-305) CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTGTCTGGTGTGTCCTTCAGTGATTACTCCTGGACTTGGATCCGACAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAATTCACTCATAGTGGAACCACCATGAGCAGCCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTACTACTGCGTGAGGAAGACTGGGGATTTTGATATCTGGGCCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTG QVQLQQWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGATTACTCC SGVSFSDYS TGGACTTGGATCCGACAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAATTCACTCATAGTGGAACCACC EFTHSGTT ATGAGCAGCCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTACTACTGC MSSPSLLSRVTTSVDAAKNQFSLALTSVTAADTAVYYC GTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGCCCAAGGGGCAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWAQGAMVTVSS 0 0 CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTGTCTGGTGTGTCCTTCAGT------GATTACTCCTGGACTTGGATCCGACAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT---------GAATTCACTCATAGTGGAACCACCATGAGCAGCCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTACTACTGCGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGCCCAAGGGGCAATGGTCACCGTCTCTTCA +41 AF262185 V4-34,J3 inter-subtype recombinant J3,V4-34 recombinant 0.640381407652413 1 0 0 295(294-296) CAGGTGCAGTTAGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATCACTACTGGACTTGGATCCCGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAGCCAGCATCAACAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACCTCCAAGAGTCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTCTATTACTGTGTGAGGAAAACTGGGAATTTTGATCTATGGGGCCAAGGGACAATGATCACCGTCTCCTCA CAGGTGCAGTTATAGTAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLXXWGAGLLKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGATCACTAC SGVSFSDHY TGGACTTGGATCCCGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIPQPPGKGLEWIGE ATCAATCATAGTGGAGCCAGCATCAACAAC INHSGASINN CCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACCTCCAAGAGTCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTCTATTACTGT PSLESRVTTSVDTSKSQFSLMLTSVTAADTAVYYC GTGAGGAAAACTGGGAATCGGGGTGCATTTGATCTATGGGGCCAAGGGACAATGATCACCGTCTCCTCA VRKTGNRGAFDLWGQGTMITVSS 0 0 CAGGTGCAGTTATAGTAGTGG---------GGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GATCACTACTGGACTTGGATCCCGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAGCCAGCATCAACAAC---------CCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACCTCCAAGAGTCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTCTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCATTTGATCTATGGGGCCAAGGGACAATGATCACCGTCTCCTCA +43 AF262187 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.8963959434072908 1 0 0 304(303-305) CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTCCTTCTGGACTTGGATCCGGCAGCCCCCCGGAAAGGGGCTGGAGTGGATTGGTGACATCTCTCATGCTGGATCCACCATCAACAACCCGTCCCTCCGGAGTCGAGTCACCACATCACTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTC QVQLQQWGAGLVKPSETLSLSCAV TCTGGTGTGTCCTTCAGTGGTTCCTTCTGG SGVSFSGSFW ACTTGGATCCGGCAGCCCCCCGGAAAGGGGCTGGAGTGGATTGGTGAC TWIRQPPGKGLEWIGD ATCTCTCATGCTGGATCCACCATCAACAAC ISHAGSTINN CCGTCCCTCCGGAGTCGAGTCACCACATCACTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGT PSLRSRVTTSLDAAKNQFSLVLTSVTAADTAVYYC GTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTCCTTCTGG------ACTTGGATCCGGCAGCCCCCCGGAAAGGGGCTGGAGTGGATTGGTGACATCTCTCATGCTGGATCCACCATCAACAAC---------CCGTCCCTCCGGAGTCGAGTCACCACATCACTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +42 AF262186 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.9014948025693593 1 0 0 304(303-305) CAGGTGCAGCTACAGCTGTGGGGCGCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTAACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCTCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACACGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAGACTGGGGATTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCTGTGGGGCGCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTC QVQLQLWGAGLVKPSGTLSLTCAV TCTGGTGTGTCCTTCAGTGGTAACGTC SGVSFSGNV TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAGTCTCTCATAGTGGAACCACC EVSHSGTT ATCACCAGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACACGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGT ITSPSLQSRVTTSLDTAKNQFSLVLTSVTAADTALYYC GTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAGCTACAGCTGTGGGGCGCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GGTAACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT---------GAAGTCTCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACACGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +44 AF262188 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.8546952820129399 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCAGTAATTACTACTGGACTTGGATCCGCCAGCCCCCAGGGAAGGGGCTGCAGTGGATTGGGGAAATCAATCAAGGTGGAATCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGCCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGGATTTTGATATCTGTGGCCAAGGGGCGATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLLKPSETLSLTCAV TATGGTGGGTCCTTCAGTAATTACTAC YGGSFSNYY TGGACTTGGATCCGCCAGCCCCCAGGGAAGGGGCTGCAGTGGATTGGGGAA WTWIRQPPGKGLQWIGE ATCAATCAAGGTGGAATCACC INQGGIT AACTACAACCCGTCCCTCAAGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGCCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGC NYNPSLKSRVTTSVDAAKNQFSLPLTSVTDADTAVYYC GTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGTGGCCAAGGGGCGATGGTCACCGTCTCTTCA VRKTGDRGAFDICGQGAMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCAGT------AATTACTACTGGACTTGGATCCGCCAGCCCCCAGGGAAGGGGCTGCAGTGGATTGGGGAAATCAAT---------CAAGGTGGAATCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGCCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGTGGCCAAGGGGCGATGGTCACCGTCTCTTCA +45 AF262189 V4-34,J3 inter-subtype recombinant J3,V4-34 recombinant 0.6495579807740143 1 0 0 301(300-302) CAGGTGCAGCTACAGCAGTGGGGCAGAGGACTGTTGGAGCCTTCGGAGACCCTGTCCCTCACCTGTGCTGTCTATGGTGGGTCCTTCGGTGGTTACTACTGGACCTGGATCCGCCAGGCCCCCGGGAAGGGTCTGGAGTGGATTGGGGACATTAGTCATAGTGGAGGCACCAGGTACAACCCGTTGCTCAGGAGTCGACTCACCATAACATTAGACACCAGCAATCAGTTCTCCCTGAAGCTGAACTCTGTGACCGCCGCGGACACGGCTCTCTATTACTGTGTGAGGAAAACTGGGAATTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCAGAGGACTGTTGGAGCCTTCGGAGACCCTGTCCCTCACCTGTGCTGTC QVQLQQWGRGLLEPSETLSLTCAV TATGGTGGGTCCTTCGGTGGTTACTAC YGGSFGGYY TGGACCTGGATCCGCCAGGCCCCCGGGAAGGGTCTGGAGTGGATTGGGGAC WTWIRQAPGKGLEWIGD ATTAGTCATAGTGGAGGCACC ISHSGGT AGGTACAACCCGTTGCTCAGGAGTCGACTCACCATAACATTAGACACCAGCAATCAGTTCTCCCTGAAGCTGAACTCTGTGACCGCCGCGGACACGGCTCTCTATTACTGT RYNPLLRSRLTITLDTSNQFSLKLNSVTAADTALYYC GTGAGGAAAACTGGGAATCGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA VRKTGNRGAFDLWGQGTMITVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCAGAGGACTGTTGGAGCCTTCGGAGACCCTGTCCCTCACCTGTGCTGTCTATGGTGGGTCCTTC------GGTGGTTACTACTGGACCTGGATCCGCCAGGCCCCCGGGAAGGGTCTGGAGTGGATTGGGGACATTAGTCATAGTGGAGGC---------ACCAGGTACAACCCGTTGCTCAGGAGTCGACTCACCATAACATTAGACACCAGC---AATCAGTTCTCCCTGAAGCTGAACTCTGTGACCGCCGCGGACACGGCTCTCTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA +46 AF262190 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.9029329223489537 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTTTCTGGTGTGTCCTTCAGTGATTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGAGCCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCAGTGACCGCCGCGGACACGGCTATTTATTACTGCGTGACGAAAACTGGGGATTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTT QVQLQQWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGATTACTTC SGVSFSDYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCACTCATAGTGGAGCCACCATCAACAAC ITHSGATINN CCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCAGTGACCGCCGCGGACACGGCTATTTATTACTGC PSLLSRVTTSVDAAKNQFSLALTSVTAADTAIYYC GTGACGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VTKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTTTCTGGTGTGTCCTTCAGT------GATTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGAGCCACCATCAACAAC---------CCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCAGTGACCGCCGCGGACACGGCTATTTATTACTGCGTGACGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +47 AF262191 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.9067997607240661 1 0 0 304(303-305) CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTCACTGATTACTCCTGGACCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGAAAAATCGATCATAATAGAGGCACCATCTACAACCCGTCCCTCAAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAATTCTCCCTGATGCTGAGGTCTATGACCGTCGCGGAAACGGCTGTTTATTACTGTGCGAGGATAACTGGGGATTTTGATACCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQEWGAGLVKPSETLSLTCAV TATGGTGTCTCCTTCACTGATTACTCC YGVSFTDYS TGGACCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGAAAA WTWIRQPPGKGLEWIGK ATCGATCATAATAGAGGCACC IDHNRGT ATCTACAACCCGTCCCTCAAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAATTCTCCCTGATGCTGAGGTCTATGACCGTCGCGGAAACGGCTGTTTATTACTGT IYNPSLKSRVTISLDTSKNQFSLMLRSMTVAETAVYYC GCGAGGATAACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA ARITGDRGAFDTWGQGTMVTVSS 0 0 CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTCACT------GATTACTCCTGGACCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGAAAAATCGATCATAATAGAGGC---------ACCATCTACAACCCGTCCCTCAAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAATTCTCCCTGATGCTGAGGTCTATGACCGTCGCGGAAACGGCTGTTTATTACTGTGCGAGGATAACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA +48 AF262192 V4-34,J3 inter-subtype recombinant J3,V4-34 recombinant 0.6645629306083416 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAAGCAACATCAATAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGTGTGAGGAAAACTGGGAATTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTATGTCCTTCAGTGATTACTAC SGMSFSDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCAATCATAGTGGAAGCAACATCAATAAC INHSGSNINN CCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGT PSLESRVTTSVDTSKNQFSLMLTSVTAADTAVYYC GTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA VRKTGNRGAFDLWGQGTMITVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGT------GATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAAGCAACATCAATAAC---------CCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGTGTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA +49 AF262193 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.6581845425533898 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCCGCGCTGTCTCTGGTGTGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCCGCGCTGTC QVQLQQWGAGLVKPSETLSLTRAV TCTGGTGTGTCCTTCACTGATTACTAC SGVSFTDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCAATCATAGTGGTACCACCATCAACAAC INHSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLKSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA VRNTGNRGAFDIWGQGTMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCCGCGCTGTCTCTGGTGTGTCCTTCACT------GATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAAC---------CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA +50 AF262194 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.4757599034653663 1 0 0 304(303-305) CAGGTGCAGCTACACTTGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATAACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCTCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAGACTGGGGATTTTGATATCTGGGGCCAAGGGGCCATGGTCACCGTCTCTTCA CAGGTGCAGCTACACTTGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLHLWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGATAACGTC SGVSFSDNV TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCTCTCATAGTGGAACCACC ISHSGTT ATCACCAGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGT ITSPSLQSRVTTSLDAAKNQFSLVLTSVTAADTALYYC GTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCCATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAGCTACACTTGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GATAACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATC---------TCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCCATGGTCACCGTCTCTTCA +51 AF262195 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.9306842507878597 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGAGTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGAGTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGVVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGATTACTAC SGVSFSDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCAATCATAGTGGTACCACCATCAACAAC INHSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLKSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA VRNTGNRGAFDIWGQGTMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGAGTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAAC---------CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA +52 AF262196 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.9045712436421715 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTTGGTAAGCCTTCGGACACCCTGTCCCTCACCCGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGAACCACCATCATCAACCCGTCCCTCCAGAGTCGACTCTCCGCATCACTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAAAACTGGGGATTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTTGGTAAGCCTTCGGACACCCTGTCCCTCACCCGCGCTGTC QVQLQQWGAGLGKPSDTLSLTRAV TCTGGTGTGTCCTTCAGTGGTTACTTC SGVSFSGYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCACTCATAGTGGAACCACC ITHSGTT ATCATCAACCCGTCCCTCCAGAGTCGACTCTCCGCATCACTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT IINPSLQSRLSASLDAAKNQFSLVLTSVTAADTAVYYC GTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRKTGDRGAFDIWGQGAMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTTGGTAAGCCTTCGGACACCCTGTCCCTCACCCGCGCTGTCTCTGGTGTGTCCTTCAGT------GGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATC---------ACTCATAGTGGAACCACCATCATCAACCCGTCCCTCCAGAGTCGACTCTCCGCATCACTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +53 AF262197 V4-34,J3 inter-subtype recombinant J3,V4-34 recombinant 0.6660296498911362 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCGGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGTAATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAAGCAACATCAACAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGAAGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGTGTGAGGAAAACTGGGAATTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCGGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTATGTCCTTCAGTAATTACTAC SGMSFSNYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCAATCATAGTGGAAGCAACATCAACAAC INHSGSNINN CCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGAAGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGT PSLESRVTTSVDTSKNQFSLKLTSVTAADTAVYYC GTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA VRKTGNRGAFDLWGQGTMITVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCGGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGT------AATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAAGCAACATCAACAAC---------CCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGAAGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGTGTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA +54 AF262198 V4-34,J3 inter-subtype recombinant J3,V4-34 recombinant 0.6504570768510484 1 0 0 304(303-305) CAGGTGCAGCTGCAGCAGTTGGGCGCAGGACTGTTGAAGCCTCCGGAGACCCTGTCCCTCTCCTGCACTGTGTATGGTGGGTCCTTCAGTGGTTACTACTGGAACTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAATATCCATCATAGTGGAAGCACCAACTACACCCCGTCCCTCAGGAGTCGAGTCACCATATCAATAGACACGTCCAAGAATCAGTTCTCCCTGATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAAAACTGGGAATTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA CAGGTGCAGCTGCAGCAGTTGGGCGCAGGACTGTTGAAGCCTCCGGAGACCCTGTCCCTCTCCTGCACTGTG QVQLQQLGAGLLKPPETLSLSCTV TATGGTGGGTCCTTCAGTGGTTACTAC YGGSFSGYY TGGAACTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAAT WNWIRQPPGKGLEWIGN ATCCATCATAGTGGAAGCACC IHHSGST AACTACACCCCGTCCCTCAGGAGTCGAGTCACCATATCAATAGACACGTCCAAGAATCAGTTCTCCCTGATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT NYTPSLRSRVTISIDTSKNQFSLMLTSVTAADTAVYYC GTGAGGAAAACTGGGAATCGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA VRKTGNRGAFDLWGQGTMITVSS 0 0 CAGGTGCAGCTGCAGCAGTTGGGCGCAGGACTGTTGAAGCCTCCGGAGACCCTGTCCCTCTCCTGCACTGTGTATGGTGGGTCCTTCAGT------GGTTACTACTGGAACTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAATATCCATCATAGTGGAAGC---------ACCAACTACACCCCGTCCCTCAGGAGTCGAGTCACCATATCAATAGACACGTCCAAGAATCAGTTCTCCCTGATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA +55 AF262199 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.3820144726889317 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGCACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCAATCATAGTGGCACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCGCCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATTTTGATATCTGGGGCCAAGGGACACTGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGCACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAALVKPSETLSLTCAV TCTGGTGTGTCCTTCAGTGATTACTAC SGVSFSDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE GTCAATCATAGTGGCACCACCATCAACAAC VNHSGTTINN CCGTCCCTCAAGAGTCGAGTCGCCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLKSRVATSVDTSKNQFSLMLTSVTAADTAVYYC GTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACACTGGTCACCGTCTCCTCA VRNTGNRGAFDIWGQGTLVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGCACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGT------GATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCAATCATAGTGGCACCACCATCAACAAC---------CCGTCCCTCAAGAGTCGAGTCGCCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACACTGGTCACCGTCTCCTCA +56 AF262200 V4-34,J3 inter-subtype recombinant J3,V4-34 recombinant 0.4914414751971381 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCCGGTGTGTCCTTCAGTGGATACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCACAGTGGCTCCACCATCAACAACCCGTCCCTCCAGAGACGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTCTATTACTGTGTGAGGAGAACTGGGGATTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTC QVQLQQWGAGLLKPSETLSLSCAV TCCGGTGTGTCCTTCAGTGGATACTTC SGVSFSGYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCACTCACAGTGGCTCCACCATCAACAAC ITHSGSTINN CCGTCCCTCCAGAGACGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTCTATTACTGT PSLQRRVITSVDAAKNQFSLVLTSVTAADTAVYYC GTGAGGAGAACTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA VRRTGDRGAFDVWGQGAMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCCGGTGTGTCCTTCAGT------GGATACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCACAGTGGCTCCACCATCAACAAC---------CCGTCCCTCCAGAGACGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTCTATTACTGTGTGAGGAGAACTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +57 AF262201 V4-34,J3-02 inter-subtype recombinant J3-02,V4-34 recombinant 0.657928265948763 1 0 0 304(303-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTC QVQLQQWGAGLVKPSETLSLTCAV TCTGGTGTGTCCTTCACTGATTACTAC SGVSFTDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAA WTWIRQPPGKGLEWIGE ATCACTCATAGTGGTACCACCATCAACAAC ITHSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLKSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA VRNTGNRGAFDIWGQGTMVTVSS 0 0 CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACT------GATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGTACCACCATCAACAAC---------CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA \ No newline at end of file diff --git a/test/PW57_original.txt b/test/PW57_original.txt new file mode 100644 index 0000000..180d99f --- /dev/null +++ b/test/PW57_original.txt @@ -0,0 +1,58 @@ +Index Name Subtype Simplified Subtype Support Recombination Support Intra-subtype Support Reading Frame Breakpoints Sequence FW1 FW1_AA CDR1 CDR1_AA FW2 FW2_AA CDR2 CDR2_AA FW3 FW3_AA CDR3 CDR3_AA JUNCTION JUNCTION_AA D_ALLELE D D_AA J J_AA Mapped Read +2 AF262146 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9978513429304945 1 0 0 288(270-306) CAGGTGCAGCTACACCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGCAAGGGGCTGCAATGGATTGGTGAAATCACTCATAGTGGAACCACCATCAACAACCCCTCCCTCCAGAGTCGAGTCAGCACATCAGTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTATATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATCTCTGGGGCCAAGGTGCGCTGGTCACCGTCTCTTCA CAGGTGCAGCTACACCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLHQWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCAGTGGTTACTTC GVSFSGYF TGGACTTGGATCCGGCAGCCCCCAGGCAAGGGGCTGCAATGGATTGGT WTWIRQPPGKGLQWIG GAAATCACTCATAGTGGAACCACCATCAACAAC EITHSGTTINN CCCTCCCTCCAGAGTCGAGTCAGCACATCAGTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTATATTACTGT PSLQSRVSTSVDAAKNQFSLVLTSVTAADTAVYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATCTCTGG CVRKTGDRGAFDLW D7_27 AaaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATCTCTGGGGCCAAGGTGCGCTGGTCACCGTCTCTTCA TGDRGAFDLWGQGALVTVSS CAGGTGCAGCTACACCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------AGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGCAAGGGGCTGCAATGGATTGGTGAAATCACTCATAGTGGAACCACCATCAACAAC---------------CCCTCCCTCCAGAGTCGAGTCAGCACATCAGTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTATATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATCTCTGGGGCCAAGGTGCGCTGGTCACCGTCTCTTCA +1 AF262145 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999651261654335 1 0 0 310(288-332) CAGGTGCAGCTCCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTAACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCTCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTCCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCAGTGGTAACGTCTGG GVSFSGNVW ACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT TWIRQPPGKGLEWIG GAAATCTCTCATAGTGGAACCACCATCACC EISHSGTTIT AGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGT SPSLQSRVTTSLDAAKNQFSLVLTSVTAADTALYYC GTGAGGAAG VRK TGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AagACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAGCTCCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTAACGTCTGG------ACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCTCTCATAGTGGAACCACCATCACC---------------AGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +4 AF262148 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9163996490826281 1 0 0 310(296-324) CAGGTGCGGCTACAACAATGGGGCGCAGGACTCTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGGTGTCTTCGGTGTGTCCCTCAGTGGTTACTACTGGACCTGGATCCGCCAGCCCCCAAACAAGGGGCTAGAGTGGATAGGGGAAATCACTCAGACTGGAGGCACCATCTACAACCCGTCCCTCCAGAGTCGAGTCACCATTTCAGTTGCCACGTCCAAGGCACAGTTGTCCCTGAAGATGACCTCTGTGACCGCCGCGGACACGGCTACTTATTTCTGTGCGCGGATGACTGTGGATCGGCGTACTTTTGATCTCTGGGGCCAGGGGACACCGGTCACCGTCTCCTCA CAGGTGCGGCTACAACAATGGGGCGCAGGACTCTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGGTGTCTTC QVRLQQWGAGLLKPSETLSLTCGVF GGTGTGTCCCTCAGTGGTTACTAC GVSLSGYY TGGACCTGGATCCGCCAGCCCCCAAACAAGGGGCTAGAGTGGATAGGG WTWIRQPPNKGLEWIG GAAATCACTCAGACTGGAGGCACCATC EITQTGGTI TACAACCCGTCCCTCCAGAGTCGAGTCACCATTTCAGTTGCCACGTCCAAGGCACAGTTGTCCCTGAAGATGACCTCTGTGACCGCCGCGGACACGGCTACTTATTTCTGT YNPSLQSRVTISVATSKAQLSLKMTSVTAADTATYFC GCGCGGATG ARM TGTGCGCGGATGACTGTGGATCGGCGTACTTTTGATCTCTGG CARMTVDRRTFDLW D3_3 acTTTTGATCTCTGG ?FDLW ACTGTGGATCGGCGTACTTTTGATCTCTGGGGCCAGGGGACACCGGTCACCGTCTCCTCA TVDRRTFDLWGQGTPVTVSS CAGGTGCGGCTACAACAATGGGGCGCAGGACTCTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGGTGTCTTCGGT------GTGTCCCTCAGTGGTTACTACTGGACCTGGATCCGCCAGCCCCCAAACAAGGGGCTAGAGTGGATAGGGGAAATCACTCAGACTGGAGGCACCATC---------------TACAACCCGTCCCTCCAGAGTCGAGTCACCATTTCAGTTGCCACGTCCAAGGCACAGTTGTCCCTGAAGATGACCTCTGTGACCGCCGCGGACACGGCTACTTATTTCTGTGCGCGGATGACTGTGGATCGGCGTACTTTTGATCTCTGGGGCCAGGGGACACCGGTCACCGTCTCCTCA +3 AF262147 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.999924046818747 1 0 0 310(289-331) CAGGTGCAGTTACACCAGTGGGGCGCAGGACTGGTGAAGCCTCCGGAGACCCTGTCCCTCACTTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCAATTACAGTGGCACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCGCCACATCAGCTGGCACGTCCAAGAATCAGTTCTCCCTTATGTTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGTTACACCAGTGGGGCGCAGGACTGGTGAAGCCTCCGGAGACCCTGTCCCTCACTTGCGCTGTCTCT QVQLHQWGAGLVKPPETLSLTCAVS GGTGTGTCCTTCAGTGATTACTAC GVSFSDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAGTCAATTACAGTGGCACCACCATCAACAAC EVNYSGTTINN CCGTCCCTCAAGAGTCGAGTCGCCACATCAGCTGGCACGTCCAAGAATCAGTTCTCCCTTATGTTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGT PSLKSRVATSAGTSKNQFSLMLTSVTAADTALYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AaaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAGTTACACCAGTGGGGCGCAGGACTGGTGAAGCCTCCGGAGACCCTGTCCCTCACTTGCGCTGTCTCTGGTGTGTCCTTC------AGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCAATTACAGTGGCACCACCATCAACAAC---------------CCGTCCCTCAAGAGTCGAGTCGCCACATCAGCTGGCACGTCCAAGAATCAGTTCTCCCTTATGTTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +5 AF262149 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999325618182991 1 0 0 288(269-307) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGATCCACCGTCATCAACCCGTCCCTCCAGAATCGAGTCACTACATCAATTGACGCGGCCAAGAGTCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAGGGGGCACTGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCAGTGGTTACTTC GVSFSGYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCACTCATAGTGGATCCACCGTCATCAAC EITHSGSTVIN CCGTCCCTCCAGAATCGAGTCACTACATCAATTGACGCGGCCAAGAGTCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGT PSLQNRVTTSIDAAKSQFSLVLTSVTAADTAVYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AaaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAGGGGGCACTGGTCACCGTCTCTTCA TGDRGAFDIWGQGALVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------AGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGATCCACCGTCATCAAC---------------CCGTCCCTCCAGAATCGAGTCACTACATCAATTGACGCGGCCAAGAGTCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAGGGGGCACTGGTCACCGTCTCTTCA +6 AF262150 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9952841470690683 1 0 0 310(301-319) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTGCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCAGTGTGTACATCTGGACCTGGATCCGCCAGCCCCCAGGGAAGGGTCTGGAGTGGATTGGGGAAATCAGTCATGCTGGAAGCACCAACTACAACCCCTCCCTCAAGACTCGAGTCATCATATCACAAGACACGTCCAAGAAGCAGTTCTCCCTGATGCTGAGCTCTGTGACCGCCGCGGAGACGGCTATTTATTACTGTGCGAGGATAAGTGGGGATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTGCGGAGACCCTGTCCCTCACCTGCGCTGTCTAT QVQLQQWGAGLLKPAETLSLTCAVY GGTGGGTCCTTCAGTGTGTACATC GGSFSVYI TGGACCTGGATCCGCCAGCCCCCAGGGAAGGGTCTGGAGTGGATTGGG WTWIRQPPGKGLEWIG GAAATCAGTCATGCTGGAAGC EISHAGS ACCAACTACAACCCCTCCCTCAAGACTCGAGTCATCATATCACAAGACACGTCCAAGAAGCAGTTCTCCCTGATGCTGAGCTCTGTGACCGCCGCGGAGACGGCTATTTATTACTGT TNYNPSLKTRVIISQDTSKKQFSLMLSSVTAAETAIYYC GCGAGGATA ARI TGTGCGAGGATAAGTGGGGATCGGGGTGCTTTTGATATCTGG CARISGDRGAFDIW D3_3 gcTTTTGATATCTGG ?FDIW AGTGGGGATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA SGDRGAFDIWGQGTMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTGCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTC------AGTGTGTACATCTGGACCTGGATCCGCCAGCCCCCAGGGAAGGGTCTGGAGTGGATTGGGGAAATCAGTCATGCTGGAAGC---------------ACCAACTACAACCCCTCCCTCAAGACTCGAGTCATCATATCACAAGACACGTCCAAGAAGCAGTTCTCCCTGATGCTGAGCTCTGTGACCGCCGCGGAGACGGCTATTTATTACTGTGCGAGGATAAGTGGGGATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA +7 AF262151 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9981686940521941 1 0 0 288(276-300) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACGTGCGCTGTCTCTGGTGTGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCCTTTGATCTCTGGGGCCAAGGTGCGCTGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACGTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCACTGATTACTAC GVSFTDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCAATCATAGTGGTACCACCATCAACAAC EINHSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLKSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAAT VRN TGTGTGAGGAATACTGGGAATCGGGGTGCCTTTGATCTCTGG CVRNTGNRGAFDLW D3_3 -TT-TGATCTCTGG ??IS? ACTGGGAATCGGGGTGCCTTTGATCTCTGGGGCCAAGGTGCGCTGGTCACCGTCTCTTCA TGNRGAFDLWGQGALVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACGTGCGCTGTCTCTGGTGTGTCCTTC------ACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAAC---------------CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCCTTTGATCTCTGGGGCCAAGGTGCGCTGGTCACCGTCTCTTCA +8 AF262152 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9583110866896581 1 0 0 296(291-301) CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTCACTGATTACTCCTGGACCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGGACAATCGATCATAATGGAGGCACCATCTACAACCCGTCCCTCAAGGGTCGAGTCACCCTTTCACTCGACGCGTCCAAGAATCAGTTCTCCCTGATGGTGACCTCTATGACCGCCGCGGATACGGCTGTTTATTACTGTGCGAGGATAACTGGGGATCGGGGCGCTTTT CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTAT QVQLQEWGAGLVKPSETLSLTCAVY GGTGTCTCCTTCACTGATTACTCC GVSFTDYS TGGACCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGG WTWIRQPPGKGLEWIG ACAATCGATCATAATGGAGGCACCATC TIDHNGGTI TACAACCCGTCCCTCAAGGGTCGAGTCACCCTTTCACTCGACGCGTCCAAGAATCAGTTCTCCCTGATGGTGACCTCTATGACCGCCGCGGATACGGCTGTTTATTACTGT YNPSLKGRVTLSLDASKNQFSLMVTSMTAADTAVYYC GCGAGGATA ARI 0 0 ACTGGGGATCGGGGCGCTTTT TGDRGAF CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTC------ACTGATTACTCCTGGACCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGGACAATCGATCAT------AATGGAGGCACCATCTACAAC---------CCGTCCCTCAAGGGTCGAGTCACCCTTTCACTCGACGCGTCCAAGAATCAGTTCTCCCTGATGGTGACCTCTATGACCGCCGCGGATACGGCTGTTTATTACTGTGCGAGGATAACTGGGGATCGGGGCGCTTTT +9 AF262153 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999329785274813 1 0 0 310(289-331) CAGGTGCAACTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGATACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAGTCATAGTGGAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGTGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAACTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCAGTGGATACTTC GVSFSGYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCAGTCATAGTGGAACCACCATCAACAAC EISHSGTTINN CCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGC PSLLSRVTTSVDAAKNQFSLALTSVTDADTAVYYC GTGAGGAAA VRK TGCGTGAGGAAAACTGGTGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AaaACTGGTGAt ?TG? ACTGGTGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAACTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------AGTGGATACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAGTCATAGTGGAACCACCATCAACAAC---------------CCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGTGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +10 AF262154 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.6731974702673109 1 0 0 310(304-316) CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACCCGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLLKPSETLSLTCAVS GGTGTGTCCTTCACTGATTACTAC GVSFTDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCAATCATAGTGGTACCACCATCAACAAC EINHSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACCCGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLKSRVTTSVDPSNNQFSLMLTSVTAADTAVYYC GTGAGGAAT VRN TGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGG CVRNTGNRGAFDIW D3_3 gcTTTTGATATCTGG ?FDIW ACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA TGNRGAFDIWGQGTTVTVSS CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------ACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAAC---------------CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACCCGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCA +11 AF262155 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999705777375697 1 0 0 288(269-307) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCCGGTGTGTCCTTCAGTGGATACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAGGGGGCTGGAGTGGATTGGTGAAATCACTCACAGTGGCTCCACCATCAACAACCCGTCCCTCCAGAGTCGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGGGGAGAACTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCC QVQLQQWGAGLLKPSETLSLTCAVS GGTGTGTCCTTCAGTGGATACTTC GVSFSGYF TGGACTTGGATCCGGCAGCCCCCAGGAAGGGGGCTGGAGTGGATTGGT WTWIRQPPGRGLEWIG GAAATCACTCACAGTGGCTCCACC EITHSGST ATCAACAACCCGTCCCTCCAGAGTCGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGT INNPSLQSRVITSVDAAKNQFSLVLTSVTAADTAVYYC GTGGGGAGA VGR TGTGTGGGGAGAACTGGGGATCGGGGTGCCTTTGATGTCTGG CVGRTGDRGAFDVW D7_27 AgaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDVWGQGAMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCCGGTGTGTCCTTC------AGTGGATACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAGGGGGCTGGAGTGGATTGGTGAAATC---------ACTCACAGTGGCTCCACCATCAACAAC------CCGTCCCTCCAGAGTCGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGGGGAGAACTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +12 AF262156 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9970464299083592 1 0 0 310(289-331) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCTGGTGTGTCCTTCAGTGAGTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGATCCACCATCAACAACCCGTCCCTCCAGAGTCGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTGTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTATTGTGTGAGGAGAAGTGGGGATCGGGGTGACTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLSCAVS GGTGTGTCCTTCAGTGAGTACTTC GVSFSEYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCACTCATAGTGGATCCACC EITHSGST ATCAACAACCCGTCCCTCCAGAGTCGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTGTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTATTGT INNPSLQSRVITSVDAAKNQLSLVLTSVTAADTAVYYC GTGAGGAGA VRR TGTGTGAGGAGAAGTGGGGATCGGGGTGACTTTGATGTCTGG CVRRSGDRGDFDVW D3_3 gaCTTTGATGTCTGG ?FDVW AGTGGGGATCGGGGTGACTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA SGDRGDFDVWGQGAMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCTGGTGTGTCCTTC------AGTGAGTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATC---------ACTCATAGTGGATCCACCATCAACAAC------CCGTCCCTCCAGAGTCGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTGTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTATTGTGTGAGGAGAAGTGGGGATCGGGGTGACTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +13 AF262157 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9947606525435643 1 0 0 316(312-320) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGTCTATGGTGTGTCCTTCAATGATTACCACTGGACCTGGATCCGCCAGCCCCCCGGCAAGGGGCTGGAGTGGATTGGGGAAATCAATCAAAGTGGAAGCACCAATTACAGCCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLLKPSETLSLTCAVS GTCTATGGTGTGTCCTTCAATGATTACCAC VYGVSFNDYH TGGACCTGGATCCGCCAGCCCCCCGGCAAGGGGCTGGAGTGGATTGGG WTWIRQPPGKGLEWIG GAAATCAATCAAAGTGGAAGC EINQSGS ACCAATTACAGCCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT TNYSPSLKSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAAT VRN TGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGG CVRNTGNRGAFDIW D3_3 gcTTTTGATATCTGG ?FDIW ACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA TGNRGAFDIWGQGTMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGTCTATGGTGTGTCCTTCAATGATTACCACTGGACCTGGATCCGCCAGCCCCCCGGCAAGGGGCTGGAGTGGATTGGGGAAATCAATCAAAGTGGAAGC---------------ACCAATTACAGCCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA +14 AF262158 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999504916853504 1 0 0 288(269-307) CAGGTCCTTCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGCTGCAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGAATCGGGGTGCCTTTGATATCTGGGGCCAAGGGTCAGTGGTCACCGTCTCTTCA CAGGTCCTTCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVLLQQWGAGLVKPSETLSLTCAVS GGTATGTCCTTCACTGATTACTAC GMSFTDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGCT WTWIRQPPGKGLEWIA GCAATCAATCATAGTGGTACCACCATCAACAAC AINHSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGC PSLKSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAAA VRK TGCGTGAGGAAAACTGGGAATCGGGGTGCCTTTGATATCTGG CVRKTGNRGAFDIW D3_3 -TT-TGATATCTGG ??IS? ACTGGGAATCGGGGTGCCTTTGATATCTGGGGCCAAGGGTCAGTGGTCACCGTCTCTTCA TGNRGAFDIWGQGSVVTVSS CAGGTCCTTCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTC------ACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGCTGCAATCAATCATAGTGGTACCACCATCAACAAC---------------CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGAATCGGGGTGCCTTTGATATCTGGGGCCAAGGGTCAGTGGTCACCGTCTCTTCA +15 AF262159 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999830837444637 1 0 0 288(269-307) CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCGCTCATAGTGGAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCAGTGATTACTTC GVSFSDYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCGCTCATAGTGGAACCACC EIAHSGTT ATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGC INNPSLLSRVTTSVDAAKNQFSLALTSVTDADTAVYYC GTGAGGAAA VRK TGCGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AaaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------AGTGATTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATC---------GCTCATAGTGGAACCACCATCAACAAC------CCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +16 AF262160 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9961615906769354 1 0 0 292(277-307) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGCGTCCTTCAGTGGTTACTACTGGACTTGGATCCGTCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGTTGAAGACAATCATCGTGGGTCCACCATTAACAACCCGTCCCTTAAGAGTCGAGCCACCACATCACTTGACACGTCCAAGAATGAGTTCTCCCTTATCCTGGCTTCTGTGACCGCCGCGGACACGGCTGGGTATTACTGTGTGAGGATTACTGGGAATCGGGGTGCTATTGATATCTGGTGCCAAGGGACAATGGTCACCGACTCCTTA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLLKPSGTLSLTCAVS GGTGCGTCCTTCAGTGGTTACTAC GASFSGYY TGGACTTGGATCCGTCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGTT WTWIRQPPGKGLEWIV GAAGACAATCATCGTGGGTCCACCATTAACAAC EDNHRGSTINN CCGTCCCTTAAGAGTCGAGCCACCACATCACTTGACACGTCCAAGAATGAGTTCTCCCTTATCCTGGCTTCTGTGACCGCCGCGGACACGGCTGGGTATTACTGT PSLKSRATTSLDTSKNEFSLILASVTAADTAGYYC GTGAGGATT VRI 0 0 ACTGGGAATCGGGGTGCTATTGATATCTGGTGCCAAGGGACAATGGTCACCGACTCCTTA TGNRGAIDIWCQGTMVTDSL CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGCGTCCTTC------AGTGGTTACTACTGGACTTGGATCCGTCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGTTGAAGACAATCATCGTGGGTCCACCATTAACAAC---------------CCGTCCCTTAAGAGTCGAGCCACCACATCACTTGACACGTCCAAGAATGAGTTCTCCCTTATCCTGGCTTCTGTGACCGCCGCGGACACGGCTGGGTATTACTGTGTGAGGATTACTGGGAATCGGGGTGCTATTGATATCTGGTGCCAAGGGACAATGGTCACCGACTCCTTA +17 AF262161 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9768342864005994 1 0 0 310(295-325) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCAGTGGTTACTACTGGAGCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAGGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTGGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTAT QVQLQQWGAGLLKPSETLSLTCAVY GGTGGGTCCTTCAGTGGTTACTAC GGSFSGYY TGGAGCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WSWIRQPPGKGLEWIG GAAATCAATCATAGTGGTACCACCATCAACAAC EINHSGTTINN CCGTCCCTCAGGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLRSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAAT VRN TGTGTGAGGAATACTGGGAATCGGGGTGCTTTGGATATCTGG CVRNTGNRGALDIW D3_3 -TTG-GATATCTGG ??IS? ACTGGGAATCGGGGTGCTTTGGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA TGNRGALDIWGQGTMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTC------AGTGGTTACTACTGGAGCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAAC---------------CCGTCCCTCAGGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTGGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA +18 AF262162 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999303083870286 1 0 0 310(288-332) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGATCCACCGTCATCAACCCGTCCCTCCAGAGTCGAGTCACTACATCAATTGACGCGGCCAAGAGTCAATTCTCCCTGGTGCTGACTTCTGCGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCAGTGGTTACTTC GVSFSGYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCACTCATAGTGGATCCACCGTCATCAAC EITHSGSTVIN CCGTCCCTCCAGAGTCGAGTCACTACATCAATTGACGCGGCCAAGAGTCAATTCTCCCTGGTGCTGACTTCTGCGACCGCCGCGGACACGGCTGTTTATTACTGT PSLQSRVTTSIDAAKSQFSLVLTSATAADTAVYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AaaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------AGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGATCCACCGTCATCAAC---------------CCGTCCCTCCAGAGTCGAGTCACTACATCAATTGACGCGGCCAAGAGTCAATTCTCCCTGGTGCTGACTTCTGCGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +19 AF262163 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9992745265735002 1 0 0 311(310-312) CAGGTGCAGCTGCTGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTCACTGATTACTCCTGGACCTGGATCCGCCAGCCCGCCGGAAAGGGGCTGGAGTGGATTGGGAAAATCGATCATGAAAGAGGCACCATCTACAACCCGTCCCTCGAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAACTCTCCTTGATGCTGAAGTCTATGACGGTCGCGGATATGGCTGTTTATTACTGTGCGAGGATCACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTGCTGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTAT QVQLLEWGAGLVKPSETLSLTCAVY GGTGTCTCCTTCACTGATTACTCC GVSFTDYS TGGACCTGGATCCGCCAGCCCGCCGGAAAGGGGCTGGAGTGGATTGGG WTWIRQPAGKGLEWIG AAAATCGATCATGAAAGAGGCACCATC KIDHERGTI TACAACCCGTCCCTCGAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAACTCTCCTTGATGCTGAAGTCTATGACGGTCGCGGATATGGCTGTTTATTACTGT YNPSLESRVTISLDTSKNQLSLMLKSMTVADMAVYYC GCGAGGATC ARI TGTGCGAGGATCACTGGGGATCGGGGCGCTTTTGATACCTGG CARITGDRGAFDTW D7_27 AtcACTGGGGAt ?TG? ACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDTWGQGAMVTVSS CAGGTGCAGCTGCTGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTC------ACTGATTACTCCTGGACCTGGATCCGCCAGCCCGCCGGAAAGGGGCTGGAGTGGATTGGGAAAATCGATCATGAAAGAGGCACCATC---------------TACAACCCGTCCCTCGAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAACTCTCCTTGATGCTGAAGTCTATGACGGTCGCGGATATGGCTGTTTATTACTGTGCGAGGATCACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +20 AF262164 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999294536257802 1 0 0 310(288-332) CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGCCCCTCAGTGATTACTCCTGGACTTGGATCCGACAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATACTGGAACCACCATGAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGTGGACACGGCTGTTTATTTCTGCGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTGTGCCCCTCAGTGATTACTCC GVPLSDYS TGGACTTGGATCCGACAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCACTCATACTGGAACCACCATGAACAAC EITHTGTTMNN CCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGTGGACACGGCTGTTTATTTCTGC PSLLSRVTTSVDAAKNQFSLALTSVTAVDTAVYFC GTGAGGAAG VRK TGCGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AagACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGCCCCTC------AGTGATTACTCCTGGACTTGGATCCGACAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATACTGGAACCACCATGAACAAC---------------CCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGTGGACACGGCTGTTTATTTCTGCGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +21 AF262165 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999637858622759 1 0 0 310(287-333) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGAACCACCATCACCAACCCGTCCCTCCAGAGTCGAGTCACCACATCACTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCAGTGGTTACGTC GVSFSGYV TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCACTCATAGTGGAACCACCATCACCAAC EITHSGTTITN CCGTCCCTCCAGAGTCGAGTCACCACATCACTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGT PSLQSRVTTSLDAAKNQFSLVLTSVTAADTAVYYC GTGAGGAAG VRK TGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AagACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------AGTGGTTACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGAACCACCATCACCAAC---------------CCGTCCCTCCAGAGTCGAGTCACCACATCACTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +22 AF262166 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.999874766898436 1 0 0 316(306-326) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCCGTCTATGGTGTGTCCTTCAATGATTACCACTGGACCTGGATCCGCCAGCCCCCCGGCAAGGGGCTGGAGTGGATTGGAGAAATCGATCATCGTGGAACCACCATCTACAGCCCGTCCCTCAAGAGCCGAGTCACCATGTCAGTAGACACGGCCAAGAATCAGGTCTCCCTGAGGGTGACCTCTATGACCGCGGCGGACACGGCTGTATATTACTGTGCGAGGATAACTGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCC QVQLQQWGAGLLKPSETLSLTCAVS GTCTATGGTGTGTCCTTCAATGATTACCAC VYGVSFNDYH TGGACCTGGATCCGCCAGCCCCCCGGCAAGGGGCTGGAGTGGATTGGA WTWIRQPPGKGLEWIG GAAATCGATCATCGTGGAACCACCATC EIDHRGTTI TACAGCCCGTCCCTCAAGAGCCGAGTCACCATGTCAGTAGACACGGCCAAGAATCAGGTCTCCCTGAGGGTGACCTCTATGACCGCGGCGGACACGGCTGTATATTACTGT YSPSLKSRVTMSVDTAKNQVSLRVTSMTAADTAVYYC GCGAGGATA ARI TGTGCGAGGATAACTGGGGATCGGGGTGCTTTTGATTTCTGG CARITGDRGAFDFW D3_3 gcTTTTGATTTCTGG ?FDFW ACTGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCACCGTCTCTTCA TGDRGAFDFWGQGTRVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCCGTCTATGGTGTGTCCTTCAATGATTACCACTGGACCTGGATCCGCCAGCCCCCCGGCAAGGGGCTGGAGTGGATTGGAGAAATCGATCATCGTGGAACCACCATC---------------TACAGCCCGTCCCTCAAGAGCCGAGTCACCATGTCAGTAGACACGGCCAAGAATCAGGTCTCCCTGAGGGTGACCTCTATGACCGCGGCGGACACGGCTGTATATTACTGTGCGAGGATAACTGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCACCGTCTCTTCA +23 AF262167 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9998095890362149 1 0 0 288(271-305) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGCCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTTCTGGACTTGGATCCGTCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCGCTCATAGTGAAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACACGGCCAACAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCACCGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGCCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLPLTCAVS GGTGTGTCCTTCAGTGATTACTTC GVSFSDYF TGGACTTGGATCCGTCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCGCTCATAGTGAAACCACC EIAHSETT ATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACACGGCCAACAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGT INNPSLLSRVTTSVDTANNQFSLALTSVTAADTAVYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AaaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCACCGGTCACCGTCTCTTCA TGDRGAFDIWGQGAPVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGCCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------AGTGATTACTTCTGGACTTGGATCCGTCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATC---------GCTCATAGTGAAACCACCATCAACAAC------CCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACACGGCCAACAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCACCGGTCACCGTCTCTTCA +24 AF262168 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999504949466417 1 0 0 292(276-308) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACTGATTACCACTGGACGTGGATCCGCCAGCCCCCAGGCAAGGGCCTGGAGTGGATTGGAGAAATCGATCATCGTGGAGACACCATCTACAGCCCGTCCCTCAAGAGTCGAGTCACCTTATCAGTAGACACGGCCAAGAATCAGGTCTCCCTAATGGTGACCTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGCGAGGATAACTGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCGCCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCACTGATTACCAC GVSFTDYH TGGACGTGGATCCGCCAGCCCCCAGGCAAGGGCCTGGAGTGGATTGGA WTWIRQPPGKGLEWIG GAAATCGATCATCGTGGAGACACCATC EIDHRGDTI TACAGCCCGTCCCTCAAGAGTCGAGTCACCTTATCAGTAGACACGGCCAAGAATCAGGTCTCCCTAATGGTGACCTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGT YSPSLKSRVTLSVDTAKNQVSLMVTSVTAADTALYYC GCGAGGATA ARI TGTGCGAGGATAACTGGGGATCGGGGTGCTTTTGATTTCTGG CARITGDRGAFDFW D3_3 gcTTTTGATTTCTGG ?FDFW ACTGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCGCCGTCTCTTCA TGDRGAFDFWGQGTRVAVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------ACTGATTACCACTGGACGTGGATCCGCCAGCCCCCAGGCAAGGGCCTGGAGTGGATTGGAGAAATCGATCATCGTGGAGACACCATC---------------TACAGCCCGTCCCTCAAGAGTCGAGTCACCTTATCAGTAGACACGGCCAAGAATCAGGTCTCCCTAATGGTGACCTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGCGAGGATAACTGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCGCCGTCTCTTCA +25 AF262169 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9889349976011899 1 0 0 316(308-324) CAGGTGCAGATACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGTCTATGGAGTGACCTTCAATGATTACCACTGGACCTGGATCCGCCAGCCCCCAGGCAAGGGACTGGAGTGGATTGGAGAAACCGATCATCGTGGAGACACCATCTACAGCCCGTCCCTCAAGAGTCGAGTCACCATGTCAGTAGACACGGCCAACAATGAGGTCTCCCTGATGGTGACCTCTGTGACCGCGGCGGACACGGCTGTATATTACTGTGCGAGGATAAATGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCACCGTCTCCTCA CAGGTGCAGATACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQIQQWGAGLLKPSETLSLTCAVS GTCTATGGAGTGACCTTCAATGATTACCAC VYGVTFNDYH TGGACCTGGATCCGCCAGCCCCCAGGCAAGGGACTGGAGTGGATTGGA WTWIRQPPGKGLEWIG GAAACCGATCATCGTGGAGACACCATC ETDHRGDTI TACAGCCCGTCCCTCAAGAGTCGAGTCACCATGTCAGTAGACACGGCCAACAATGAGGTCTCCCTGATGGTGACCTCTGTGACCGCGGCGGACACGGCTGTATATTACTGT YSPSLKSRVTMSVDTANNEVSLMVTSVTAADTAVYYC GCGAGGATA ARI TGTGCGAGGATAAATGGGGATCGGGGTGCTTTTGATTTCTGG CARINGDRGAFDFW D3_3 gcTTTTGATTTCTGG ?FDFW AATGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCACCGTCTCCTCA NGDRGAFDFWGQGTRVTVSS CAGGTGCAGATACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGTCTATGGAGTGACCTTCAATGATTACCACTGGACCTGGATCCGCCAGCCCCCAGGCAAGGGACTGGAGTGGATTGGAGAAACCGATCATCGTGGAGACACCATC---------------TACAGCCCGTCCCTCAAGAGTCGAGTCACCATGTCAGTAGACACGGCCAACAATGAGGTCTCCCTGATGGTGACCTCTGTGACCGCGGCGGACACGGCTGTATATTACTGTGCGAGGATAAATGGGGATCGGGGTGCTTTTGATTTCTGGGGCCAAGGGACAAGGGTCACCGTCTCCTCA +26 AF262170 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9966012656819225 1 0 0 310(291-329) CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGCACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACCTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLLKPSETLSLTCAVS GGTGTGTCCTTCACTGATTACTAC GVSFTDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCAATCATAGTGGCACCACCATCAACAAC EINHSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACCTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLKSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAAT VRN TGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGG CVRNTGNRGAFDIW D3_3 gcTTTTGATATCTGG ?FDIW ACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA TGNRGAFDIWGQGTMVTVSS CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------ACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGCACCACCATCAACAAC---------------CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACCTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA +27 AF262171 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999608416821664 1 0 0 288(268-308) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTAGTTACTTCTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGCAGTGGATTGGTGAAATCAGTCCTAGTGGAACTACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAATTGACACGTCCAAGAATCAGTTCTCCCTGGTCCTGACTTCTGTGACCGCCGCGGACATGGCTGTGTATTATTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCAGTAGTTACTTC GVSFSSYF TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGCAGTGGATTGGT WTWIRQPPGKGLQWIG GAAATCAGTCCTAGTGGAACTACCATCAACAAC EISPSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAATTGACACGTCCAAGAATCAGTTCTCCCTGGTCCTGACTTCTGTGACCGCCGCGGACATGGCTGTGTATTATTGT PSLKSRVTTSIDTSKNQFSLVLTSVTAADMAVYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AaaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------AGTAGTTACTTCTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGCAGTGGATTGGTGAAATCAGTCCTAGTGGAACTACCATCAACAAC---------------CCGTCCCTCAAGAGTCGAGTCACCACATCAATTGACACGTCCAAGAATCAGTTCTCCCTGGTCCTGACTTCTGTGACCGCCGCGGACATGGCTGTGTATTATTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +29 AF262173 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.995208867204202 1 0 0 310(302-318) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGCAGACCCTGTCCCTCACTTGCGCTGTCTATGGTGGGTCCTTCAGTGGTTACTACTGGAGCTGGATCCGCCAGCCCCCAGGGAAGGGACTGGAGTGGGTTGGGTATATCCACTACAGTGGGAGCACCAACTACAACCCCTCCCTCACGACTCGAGTCACCATATCACAAGACACGTCCAAGAATCAGTTCTCCCTGATGCTGAGCTCTGTGACCGCCGCGGAAACGGCTATTTATTACTGTGCGAGGATAAGTGGGGATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGCAGACCCTGTCCCTCACTTGCGCTGTCTAT QVQLQQWGAGLLKPSQTLSLTCAVY GGTGGGTCCTTCAGTGGTTACTAC GGSFSGYY TGGAGCTGGATCCGCCAGCCCCCAGGGAAGGGACTGGAGTGGGTTGGG WSWIRQPPGKGLEWVG TATATCCACTACAGTGGGAGC YIHYSGS ACCAACTACAACCCCTCCCTCACGACTCGAGTCACCATATCACAAGACACGTCCAAGAATCAGTTCTCCCTGATGCTGAGCTCTGTGACCGCCGCGGAAACGGCTATTTATTACTGT TNYNPSLTTRVTISQDTSKNQFSLMLSSVTAAETAIYYC GCGAGGATA ARI TGTGCGAGGATAAGTGGGGATCGGGGTGCTTTTGATATCTGG CARISGDRGAFDIW D3_3 gcTTTTGATATCTGG ?FDIW AGTGGGGATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA SGDRGAFDIWGQGTMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGCAGACCCTGTCCCTCACTTGCGCTGTCTATGGTGGGTCCTTC------AGTGGTTACTACTGGAGCTGGATCCGCCAGCCCCCAGGGAAGGGACTGGAGTGGGTTGGGTATATCCACTACAGTGGGAGC---------------ACCAACTACAACCCCTCCCTCACGACTCGAGTCACCATATCACAAGACACGTCCAAGAATCAGTTCTCCCTGATGCTGAGCTCTGTGACCGCCGCGGAAACGGCTATTTATTACTGTGCGAGGATAAGTGGGGATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA +28 AF262172 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999205728561725 1 0 0 310(290-330) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGGTACTTCTGGACTTGGATCCGGCAGTCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACCCATAGTGGATCCACCATCAACAACCCGTCCCTCCAGAGTCGAGTCATCACATCAATTGACGCGGCCAAGAATCAATTGTCCCTGGTTCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTATTGTGTGAGGAGAAGTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLSCAVS GGTGTGTCCTTCAGTGGGTACTTC GVSFSGYF TGGACTTGGATCCGGCAGTCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQSPGKGLEWIG GAAATCACCCATAGTGGATCCACC EITHSGST ATCAACAACCCGTCCCTCCAGAGTCGAGTCATCACATCAATTGACGCGGCCAAGAATCAATTGTCCCTGGTTCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTATTGT INNPSLQSRVITSIDAAKNQLSLVLTSVTAADTAVYYC GTGAGGAGA VRR TGTGTGAGGAGAAGTGGGGATCGGGGTGCCTTTGATGTCTGG CVRRSGDRGAFDVW D3_16 gaTGTCTGG ?VW AGTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA SGDRGAFDVWGQGAMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCTGGTGTGTCCTTC------AGTGGGTACTTCTGGACTTGGATCCGGCAGTCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATC---------ACCCATAGTGGATCCACCATCAACAAC------CCGTCCCTCCAGAGTCGAGTCATCACATCAATTGACGCGGCCAAGAATCAATTGTCCCTGGTTCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTATTGTGTGAGGAGAAGTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +30 AF262174 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999637285317886 1 0 0 288(271-305) CAGGTGCAACTACAGCAGTGGGGCGCAGAACTGTTGAAGCCTTCGCAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCTATGATAACAACTGGAACTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAAATCAATCATAGCGGAAGCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAATAGACACGTCCAAGAACCAGTTCTCCCTGAGGTTGAATTCTGTGACCGCCGCGGACACGGCTTTGTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAACTACAGCAGTGGGGCGCAGAACTGTTGAAGCCTTCGCAGACCCTGTCCCTCACCTGCGCTGTCTAT QVQLQQWGAELLKPSQTLSLTCAVY GGTGGGTCCTTCTATGATAACAACTGG GGSFYDNNW AACTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGG NWIRQPPGKGLEWIG GAAATCAATCATAGCGGAAGC EINHSGS ACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAATAGACACGTCCAAGAACCAGTTCTCCCTGAGGTTGAATTCTGTGACCGCCGCGGACACGGCTTTGTATTACTGT TNYNPSLKSRVTISIDTSKNQFSLRLNSVTAADTALYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AaaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAACTACAGCAGTGGGGCGCAGAACTGTTGAAGCCTTCGCAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCTATGATAACAACTGG------AACTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAAATCAATCATAGCGGAAGC---------------ACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAATAGACACGTCCAAGAACCAGTTCTCCCTGAGGTTGAATTCTGTGACCGCCGCGGACACGGCTTTGTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +31 AF262175 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999277010277446 1 0 0 310(290-330) CAGGTGCAGCTACAGCTGTGGGGCGCAGGACTGGTAAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTAACGTCTGGACTTGGATCCGCAAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCTCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGGGTCGAGTCACCACATCCCTTGACGCCGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTACTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCTGTGGGGCGCAGGACTGGTAAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQLWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCAGTGGTAACGTCTGG GVSFSGNVW ACTTGGATCCGCAAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT TWIRKPPGKGLEWIG GAAATCTCTCATAGTGGAACCACCATCACC EISHSGTTIT AGCCCGTCCCTCCAGGGTCGAGTCACCACATCCCTTGACGCCGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTACTACTGT SPSLQGRVTTSLDAAKNQFSLVLTSVTAADTALYYC GTGAGGAAG VRK TGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AagACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAGCTACAGCTGTGGGGCGCAGGACTGGTAAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTAACGTCTGG------ACTTGGATCCGCAAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCTCTCATAGTGGAACCACCATCACC---------------AGCCCGTCCCTCCAGGGTCGAGTCACCACATCCCTTGACGCCGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTACTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +32 AF262176 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.973328489695961 1 0 0 310(290-330) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAACCAGCTTCAACAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCTTTTGACCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTATGTCCTTCAGTGATTACTAC GMSFSDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCAATCATAGTGGAACCAGCTTCAACAAC EINHSGTSFNN CCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLESRVTTSVDTSKNQFSLMLTSVTAADTAVYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGAATCGGGGTGCTTTTGACCTCTGG CVRKTGNRGAFDLW D3_10 gAcCTCTGG ?LW ACTGGGAATCGGGGTGCTTTTGACCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA TGNRGAFDLWGQGTMITVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTC------AGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAACCAGCTTCAACAAC---------------CCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCTTTTGACCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA +33 AF262177 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999345202817407 1 0 0 288(269-307) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCGCTCATAGTGGAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGAAGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCAGTGATTACTTC GVSFSDYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCGCTCATAGTGGAACCACC EIAHSGTT ATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGAAGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGC INNPSLLSRVTTSVDAAKNQFSLKLTSVTDADTAVYYC GTGAGGAAA VRK TGCGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AaaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------AGTGATTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATC---------GCTCATAGTGGAACCACCATCAACAAC------CCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGAAGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +34 AF262178 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9958868530358256 1 0 0 310(298-322) CAGGTGCAGCTACAGCAGTGGGGCGCAGCACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCAATCATAGTGGCACCACCATCAACAACCCGGCCCTCAAGAGTCGGGTCGCCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGCACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAALVKPSETLSLTCAVS GGTGTGTCCTTCAGTGATTACTAC GVSFSDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAGTCAATCATAGTGGCACCACCATCAACAAC EVNHSGTTINN CCGGCCCTCAAGAGTCGGGTCGCCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PALKSRVATSVDTSKNQFSLMLTSVTAADTAVYYC GTGAGGAAT VRN TGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGG CVRNTGNRGAFDIW D3_3 gcTTTTGATATCTGG ?FDIW ACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA TGNRGAFDIWGQGTMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGCACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------AGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCAATCATAGTGGCACCACCATCAACAAC---------------CCGGCCCTCAAGAGTCGGGTCGCCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA +35 AF262179 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999339915397807 1 0 0 292(277-307) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCCTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGCAAGGGGCTGGAGTGGATTGGTGAAATAAGTCATAGTGGACCCACCATCAACAACCCGTCCCTCCAGAGTCGAGTCACCACATCAGTTGACGCGGCCACGAATCAATTCTCCCTGCTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAGAGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTGTGTCCCTCAGTGGTTACTTC GVSLSGYF TGGACTTGGATCCGGCAGCCCCCAGGCAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATAAGTCATAGTGGACCCACCATCAACAAC EISHSGPTINN CCGTCCCTCCAGAGTCGAGTCACCACATCAGTTGACGCGGCCACGAATCAATTCTCCCTGCTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGT PSLQSRVTTSVDAATNQFSLLLTSVTAADTAVYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AaaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAGAGGTCACCGTCTCTTCA TGDRGAFDIWGQGAEVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGT------GTGTCCCTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGCAAGGGGCTGGAGTGGATTGGTGAAATAAGTCATAGTGGACCCACCATCAACAAC---------------CCGTCCCTCCAGAGTCGAGTCACCACATCAGTTGACGCGGCCACGAATCAATTCTCCCTGCTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAGAGGTCACCGTCTCTTCA +36 AF262180 V6-1,J3-01 inter-subtype recombinant J3-01,V6-1 recombinant 0.9598431423284457 1 0 0 311(310-312) CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTGACTGATTACTCCTGGACCTGGATCCGCCAGCCCCCAGGCGAGGGGCTGGAGTGGATTGGGAAAATCGATCATAATAGAGGCACCATCTACAACCCGTCCCTCAAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAATTCTCCCTGATGCTGAGCTCTATGACCGTCGCGGATACGGCTGTATATTACTGTGCGAGGATAACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCT QVQLQEWGAGLVKPSETLSLTCA GTCTATGGTGTCTCCTTGACTGATTACTCC VYGVSLTDYS TGGACCTGGATCCGCCAGCCCCCAGGCGAGGGGCTGGAGTGGATTGGG WTWIRQPPGEGLEWIG AAAATCGATCATAATAGAGGCACCATC KIDHNRGTI TACAACCCGTCCCTCAAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAATTCTCCCTGATGCTGAGCTCTATGACCGTCGCGGATACGGCTGTATATTACTGT YNPSLKSRVTISLDTSKNQFSLMLSSMTVADTAVYYC GCGAGGATA ARI TGTGCGAGGATAACTGGGGATCGGGGCGCTTTTGATACCTGG CARITGDRGAFDTW D7_27 AtaACTGGGGAt ?TG? ACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA TGDRGAFDTWGQGTMVTVSS CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCT------GTCTATGGTGTCTCCTTGACTGATTACTCCTGGACCTGGATCCGCCAGCCCCCAGGCGAGGGGCTGGAGTGGATTGGGAAAATCGATCAT------AATAGAGGCACCATCTACAAC---------CCGTCCCTCAAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAATTCTCCCTGATGCTGAGCTCTATGACCGTCGCGGATACGGCTGTATATTACTGTGCGAGGATAACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA +37 AF262181 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9990033761863256 1 0 0 308(289-327) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCTTCGGAAGACCCTGTCCCTCTCCTGCGGTGTCTCTGGTGTGTCCTTCAGTGATTACGTCTGGTCTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGCTGACATCACTCATAGTGGAACCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCGCGTCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGAGTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCTATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCTTCGGAAGACCCTGTCCCTCTCCTGCGGTGTCTCT QVQLQQWGAGLVKLRKTLSLSCGVS GGTGTGTCCTTCAGTGATTACGTC GVSFSDYV TGGTCTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGCT WSWIRQPPGKGLEWIA GACATCACTCATAGTGGAACCACCATCAACAAC DITHSGTTINN CCGTCCCTCCTGAGTCGAGTCACCGCGTCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGAGTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGT PSLLSRVTASVDAAKNQFSLALSSVTAADTAVYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AaaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCTATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCTTCGGAAGACCCTGTCCCTCTCCTGCGGTGTCTCTGGTGTGTCCTTC------AGTGATTACGTCTGGTCTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGCTGACATCACTCATAGTGGAACCACCATCAACAAC---------------CCGTCCCTCCTGAGTCGAGTCACCGCGTCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGAGTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCTATGGTCACCGTCTCTTCA +38 AF262182 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9996504708239838 1 0 0 310(293-327) CAGGTGCAACTACAGCAGTGGGGCCCAGGGCTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTGAGTGATTACTCCTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAACCCTGGCGGAACCACCATCAACAACCCGTCCCTCAGGAGTCGAGTCACCACATCAGTGGACACGTCCAGCAATCAGTTCTCCCTCATAATGACTTCTGTGACCGCCGCGGACACGGCTCTATATTATTGTGTGAGGAAGACTGGGGATCGGGGTGCTTTTGATATCTGGGGCCGAGGGACAATGGTCACCGTCTCTTCA CAGGTGCAACTACAGCAGTGGGGCCCAGGGCTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGPGLVKPSETLSLTCAVS GGTGTGTCCTTGAGTGATTACTCC GVSLSDYS TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCAACCCTGGCGGAACCACCATCAACAAC EINPGGTTINN CCGTCCCTCAGGAGTCGAGTCACCACATCAGTGGACACGTCCAGCAATCAGTTCTCCCTCATAATGACTTCTGTGACCGCCGCGGACACGGCTCTATATTATTGT PSLRSRVTTSVDTSSNQFSLIMTSVTAADTALYYC GTGAGGAAG VRK TGTGTGAGGAAGACTGGGGATCGGGGTGCTTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AagACTGGGGAt ?TG? ACTGGGGATCGGGGTGCTTTTGATATCTGGGGCCGAGGGACAATGGTCACCGTCTCTTCA TGDRGAFDIWGRGTMVTVSS CAGGTGCAACTACAGCAGTGGGGCCCAGGGCTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGT------GTGTCCTTGAGTGATTACTCCTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAACCCTGGCGGAACCACCATCAACAAC---------------CCGTCCCTCAGGAGTCGAGTCACCACATCAGTGGACACGTCCAGCAATCAGTTCTCCCTCATAATGACTTCTGTGACCGCCGCGGACACGGCTCTATATTATTGTGTGAGGAAGACTGGGGATCGGGGTGCTTTTGATATCTGGGGCCGAGGGACAATGGTCACCGTCTCTTCA +39 AF262183 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9961962850228847 1 0 0 310(287-333) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAAGCAACATCAACAACCCGTCCCTCGAGAGTCGAGTCACCACACCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGTGTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTATGTCCTTCAGTGATTACTAC GMSFSDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCAATCATAGTGGAAGC EINHSGS AACATCAACAACCCGTCCCTCGAGAGTCGAGTCACCACACCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGT NINNPSLESRVTTPVDTSKNQFSLMLTSVTAADTAVYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGG CVRKTGNRGAFDLW D3_3 gcTTTTGATCTCTGG ?FDLW ACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA TGNRGAFDLWGQGTMITVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTC------AGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAAGC---------------AACATCAACAACCCGTCCCTCGAGAGTCGAGTCACCACACCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGTGTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA +40 AF262184 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999347646080236 1 0 0 288(269-307) CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTGTCTGGTGTGTCCTTCAGTGATTACTCCTGGACTTGGATCCGACAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAATTCACTCATAGTGGAACCACCATGAGCAGCCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTACTACTGCGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGCCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTGTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCAGTGATTACTCC GVSFSDYS TGGACTTGGATCCGACAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAATTCACTCATAGTGGAACCACCATGAGC EFTHSGTTMS AGCCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTACTACTGC SPSLLSRVTTSVDAAKNQFSLALTSVTAADTAVYYC GTGAGGAAG VRK 0 0 ACTGGGGATCGGGGTGCCTTTGATATCTGGGCCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWAQGAMVTVSS CAGGTGCAGCTGCAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTGTCTGGTGTGTCCTTC------AGTGATTACTCCTGGACTTGGATCCGACAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAATTCACTCATAGTGGAACCACCATGAGC---------------AGCCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTACTACTGCGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGCCCAAGGGGCAATGGTCACCGTCTCTTCA +41 AF262185 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9972940488914903 1 0 0 279(260-298) CAGGTGCAGTTAGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATCACTACTGGACTTGGATCCCGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAGCCAGCATCAACAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACCTCCAAGAGTCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTCTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCATTTGATCTATGGGGCCAAGGGACAATGATCACCGTCTCCTCA CAGGTGCAGTTATAGTAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLXXWGAGLLKPSETLSLTCAVS GGTGTGTCCTTCAGTGATCACTAC GVSFSDHY TGGACTTGGATCCCGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIPQPPGKGLEWIG GAAATCAATCATAGTGGAGCCAGCATCAACAAC EINHSGASINN CCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACCTCCAAGAGTCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTCTATTACTGT PSLESRVTTSVDTSKSQFSLMLTSVTAADTAVYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGAATCGGGGTGCATTTGATCTATGG CVRKTGNRGAFDLW D3_10 gAtCTATGG ?LW ACTGGGAATCGGGGTGCATTTGATCTATGGGGCCAAGGGACAATGATCACCGTCTCCTCA TGNRGAFDLWGQGTMITVSS CAGGTGCAGTTATAGTAGTGG---------GGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------AGTGATCACTACTGGACTTGGATCCCGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAGCCAGCATCAACAAC---------------CCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACCTCCAAGAGTCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTCTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCATTTGATCTATGGGGCCAAGGGACAATGATCACCGTCTCCTCA +42 AF262186 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999418008186053 1 0 0 310(289-331) CAGGTGCAGCTACAGCTGTGGGGCGCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTAACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCTCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACACGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCTGTGGGGCGCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQLWGAGLVKPSGTLSLTCAVS GGTGTGTCCTTCAGTGGTAACGTCTGG GVSFSGNVW ACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT TWIRQPPGKGLEWIG GAAGTCTCTCATAGTGGAACCACCATCACC EVSHSGTTIT AGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACACGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGT SPSLQSRVTTSLDTAKNQFSLVLTSVTAADTALYYC GTGAGGAAG VRK TGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AagACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAGCTACAGCTGTGGGGCGCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTAACGTCTGG------ACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCTCTCATAGTGGAACCACCATCACC---------------AGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACACGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +43 AF262187 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999282461334408 1 0 0 310(288-332) CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTCCTTCTGGACTTGGATCCGGCAGCCCCCCGGAAAGGGGCTGGAGTGGATTGGTGACATCTCTCATGCTGGATCCACCATCAACAACCCGTCCCTCCGGAGTCGAGTCACCACATCACTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLSCAVS GGTGTGTCCTTCAGTGGTTCCTTC GVSFSGSF TGGACTTGGATCCGGCAGCCCCCCGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GACATCTCTCATGCTGGATCCACC DISHAGST ATCAACAACCCGTCCCTCCGGAGTCGAGTCACCACATCACTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGT INNPSLRSRVTTSLDAAKNQFSLVLTSVTAADTAVYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AaaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAGCTACAACAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTCC------TTCTGGACTTGGATCCGGCAGCCCCCCGGAAAGGGGCTGGAGTGGATTGGTGACATC---------TCTCATGCTGGATCCACCATCAACAAC------CCGTCCCTCCGGAGTCGAGTCACCACATCACTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTTTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +44 AF262188 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9994209463772846 1 0 0 288(274-302) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCAGTAATTACTACTGGACTTGGATCCGCCAGCCCCCAGGGAAGGGGCTGCAGTGGATTGGGGAAATCAATCAAGGTGGAATCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGCCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGTGGCCAAGGGGCGATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTAT QVQLQQWGAGLLKPSETLSLTCAVY GGTGGGTCCTTCAGTAATTACTAC GGSFSNYY TGGACTTGGATCCGCCAGCCCCCAGGGAAGGGGCTGCAGTGGATTGGG WTWIRQPPGKGLQWIG GAAATCAATCAAGGTGGA EINQGG ATCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGCCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGC ITNYNPSLKSRVTTSVDAAKNQFSLPLTSVTDADTAVYYC GTGAGGAAA VRK 0 0 ACTGGGGATCGGGGTGCCTTTGATATCTGTGGCCAAGGGGCGATGGTCACCGTCTCTTCA TGDRGAFDICGQGAMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTC------AGTAATTACTACTGGACTTGGATCCGCCAGCCCCCAGGGAAGGGGCTGCAGTGGATTGGGGAAATCAATCAAGGTGGA---------------ATCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGCCGCTGACTTCTGTGACCGACGCGGACACGGCTGTTTATTACTGCGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGTGGCCAAGGGGCGATGGTCACCGTCTCTTCA +45 AF262189 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9927543693329074 1 0 0 307(290-324) CAGGTGCAGCTACAGCAGTGGGGCAGAGGACTGTTGGAGCCTTCGGAGACCCTGTCCCTCACCTGTGCTGTCTATGGTGGGTCCTTCGGTGGTTACTACTGGACCTGGATCCGCCAGGCCCCCGGGAAGGGTCTGGAGTGGATTGGGGACATTAGTCATAGTGGAGGCACCAGGTACAACCCGTTGCTCAGGAGTCGACTCACCATAACATTAGACACCAGCAATCAGTTCTCCCTGAAGCTGAACTCTGTGACCGCCGCGGACACGGCTCTCTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCAGAGGACTGTTGGAGCCTTCGGAGACCCTGTCCCTCACCTGTGCTGTCTAT QVQLQQWGRGLLEPSETLSLTCAVY GGTGGGTCCTTCGGTGGTTACTAC GGSFGGYY TGGACCTGGATCCGCCAGGCCCCCGGGAAGGGTCTGGAGTGGATTGGG WTWIRQAPGKGLEWIG GACATTAGTCATAGTGGA DISHSG GGCACCAGGTACAACCCGTTGCTCAGGAGTCGACTCACCATAACATTAGACACCAGCAATCAGTTCTCCCTGAAGCTGAACTCTGTGACCGCCGCGGACACGGCTCTCTATTACTGT GTRYNPLLRSRLTITLDTSNQFSLKLNSVTAADTALYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGAATCGGGGTGCTTTTGATCTCTGG CVRKTGNRGAFDLW D3_3 gcTTTTGATCTCTGG ?FDLW ACTGGGAATCGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA TGNRGAFDLWGQGTMITVSS CAGGTGCAGCTACAGCAGTGGGGCAGAGGACTGTTGGAGCCTTCGGAGACCCTGTCCCTCACCTGTGCTGTCTATGGTGGGTCCTTC------GGTGGTTACTACTGGACCTGGATCCGCCAGGCCCCCGGGAAGGGTCTGGAGTGGATTGGGGACATTAGTCAT---------------AGTGGAGGCACCAGGTACAACCCGTTGCTCAGGAGTCGACTCACCATAACATTAGACACCAGC---AATCAGTTCTCCCTGAAGCTGAACTCTGTGACCGCCGCGGACACGGCTCTCTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA +47 AF262191 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9995592643153447 1 0 0 311(310-312) CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTCACTGATTACTCCTGGACCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGAAAAATCGATCATAATAGAGGCACCATCTACAACCCGTCCCTCAAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAATTCTCCCTGATGCTGAGGTCTATGACCGTCGCGGAAACGGCTGTTTATTACTGTGCGAGGATAACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTAT QVQLQEWGAGLVKPSETLSLTCAVY GGTGTCTCCTTCACTGATTACTCC GVSFTDYS TGGACCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGA WTWIRQPPGKGLEWIG AAAATCGATCATAATAGAGGCACCATC KIDHNRGTI TACAACCCGTCCCTCAAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAATTCTCCCTGATGCTGAGGTCTATGACCGTCGCGGAAACGGCTGTTTATTACTGT YNPSLKSRVTISLDTSKNQFSLMLRSMTVAETAVYYC GCGAGGATA ARI TGTGCGAGGATAACTGGGGATCGGGGCGCTTTTGATACCTGG CARITGDRGAFDTW D7_27 AtaACTGGGGAt ?TG? ACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA TGDRGAFDTWGQGTMVTVSS CAGGTGCAGCTGCAGGAGTGGGGAGCCGGACTGGTGAAGCCCTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGTCTCCTTC------ACTGATTACTCCTGGACCTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGAAAAATCGATCAT------AATAGAGGCACCATCTACAAC---------CCGTCCCTCAAGAGTCGAGTCACCATTTCACTAGACACGTCCAAGAATCAATTCTCCCTGATGCTGAGGTCTATGACCGTCGCGGAAACGGCTGTTTATTACTGTGCGAGGATAACTGGGGATCGGGGCGCTTTTGATACCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA +46 AF262190 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999642585835226 1 0 0 288(268-308) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTTTCTGGTGTGTCCTTCAGTGATTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGAGCCACCATCAACAACCCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCAGTGACCGCCGCGGACACGGCTATTTATTACTGCGTGACGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTTTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCAGTGATTACTTC GVSFSDYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCACTCATAGTGGAGCCACCATCAACAAC EITHSGATINN CCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCAGTGACCGCCGCGGACACGGCTATTTATTACTGC PSLLSRVTTSVDAAKNQFSLALTSVTAADTAIYYC GTGACGAAA VTK TGCGTGACGAAAACTGGGGATCGGGGTGCCTTTGATATCTGG CVTKTGDRGAFDIW D7_27 AaaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTTTCTGGTGTGTCCTTC------AGTGATTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGAGCCACCATCAACAAC---------------CCGTCCCTCCTGAGTCGAGTCACCACATCCGTTGACGCGGCCAAGAATCAGTTCTCCCTGGCGCTGACTTCAGTGACCGCCGCGGACACGGCTATTTATTACTGCGTGACGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +49 AF262193 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9962163149200891 1 0 0 310(293-327) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCCGCGCTGTCTCTGGTGTGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCCGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTRAVS GGTGTGTCCTTCACTGATTACTAC GVSFTDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCAATCATAGTGGTACCACCATCAACAAC EINHSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLKSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAAT VRN TGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGG CVRNTGNRGAFDIW D3_3 gcTTTTGATATCTGG ?FDIW ACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA TGNRGAFDIWGQGTMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCCGCGCTGTCTCTGGTGTGTCCTTC------ACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAAC---------------CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA +48 AF262192 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9964979180449668 1 0 0 310(287-333) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAAGCAACATCAATAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGTGTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTATGTCCTTCAGTGATTACTAC GMSFSDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCAATCATAGTGGAAGC EINHSGS AACATCAATAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGT NINNPSLESRVTTSVDTSKNQFSLMLTSVTAADTAVYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGG CVRKTGNRGAFDLW D3_3 gcTTTTGATCTCTGG ?FDLW ACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA TGNRGAFDLWGQGTMITVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTC------AGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAAGC---------------AACATCAATAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGTGTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA +51 AF262195 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999847612252567 1 0 0 310(289-331) CAGGTGCAGCTACAGCAGTGGGGCGCAGGAGTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGAGTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGVVKPSETLSLTCAVS GGTGTGTCCTTCAGTGATTACTAC GVSFSDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCAATCATAGTGGTACCACCATCAACAAC EINHSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLKSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAAT VRN TGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGG CVRNTGNRGAFDIW D3_3 gcTTTTGATATCTGG ?FDIW ACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA TGNRGAFDIWGQGTMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGAGTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------AGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGTACCACCATCAACAAC---------------CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCA +50 AF262194 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.986474902806622 1 0 0 310(291-329) CAGGTGCAGCTACACTTGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATAACGTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCTCTCATAGTGGAACCACCATCACCAGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCCATGGTCACCGTCTCTTCA CAGGTGCAGCTACACTTGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLHLWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCAGTGATAACGTCTGG GVSFSDNVW ACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT TWIRQPPGKGLEWIG GAAATCTCTCATAGTGGAACCACCATCACC EISHSGTTIT AGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGT SPSLQSRVTTSLDAAKNQFSLVLTSVTAADTALYYC GTGAGGAAG VRK TGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AagACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCCATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAGCTACACTTGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATAACGTCTGG------ACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCTCTCATAGTGGAACCACCATCACC---------------AGCCCGTCCCTCCAGAGTCGAGTCACCACATCCCTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTCTTTATTACTGTGTGAGGAAGACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCCATGGTCACCGTCTCTTCA +52 AF262196 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999235998726352 1 0 0 310(290-330) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTTGGTAAGCCTTCGGACACCCTGTCCCTCACCCGCGCTGTCTCTGGTGTGTCCTTCAGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGAACCACCATCATCAACCCGTCCCTCCAGAGTCGACTCTCCGCATCACTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTTGGTAAGCCTTCGGACACCCTGTCCCTCACCCGCGCTGTCTCT QVQLQQWGAGLGKPSDTLSLTRAVS GGTGTGTCCTTCAGTGGTTACTTC GVSFSGYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCACTCATAGTGGAACCACCATCATCAAC EITHSGTTIIN CCGTCCCTCCAGAGTCGACTCTCCGCATCACTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLQSRLSASLDAAKNQFSLVLTSVTAADTAVYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGG CVRKTGDRGAFDIW D7_27 AaaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDIWGQGAMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTTGGTAAGCCTTCGGACACCCTGTCCCTCACCCGCGCTGTCTCTGGTGTGTCCTTC------AGTGGTTACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGAACCACCATCATCAAC---------------CCGTCCCTCCAGAGTCGACTCTCCGCATCACTTGACGCGGCCAAGAATCAGTTCTCCCTGGTGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAAAACTGGGGATCGGGGTGCCTTTGATATCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +53 AF262197 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9965140671704512 1 0 0 288(268-308) CAGGTGCAGCTACAGCAGTGGGGCGCGGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTCAGTAATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAAGCAACATCAACAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGAAGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGTGTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCGGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTATGTCCTTCAGTAATTACTAC GMSFSNYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCAATCATAGTGGAAGC EINHSGS AACATCAACAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGAAGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGT NINNPSLESRVTTSVDTSKNQFSLKLTSVTAADTAVYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGG CVRKTGNRGAFDLW D3_3 gcTTTTGATCTCTGG ?FDLW ACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA TGNRGAFDLWGQGTMITVSS CAGGTGCAGCTACAGCAGTGGGGCGCGGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTATGTCCTTC------AGTAATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCAATCATAGTGGAAGC---------------AACATCAACAACCCGTCCCTCGAGAGTCGAGTCACCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTGAAGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTATTGTGTGAGGAAAACTGGGAATAGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA +54 AF262198 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9964746111390828 1 0 0 310(287-333) CAGGTGCAGCTGCAGCAGTTGGGCGCAGGACTGTTGAAGCCTCCGGAGACCCTGTCCCTCTCCTGCACTGTGTATGGTGGGTCCTTCAGTGGTTACTACTGGAACTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAATATCCATCATAGTGGAAGCACCAACTACACCCCGTCCCTCAGGAGTCGAGTCACCATATCAATAGACACGTCCAAGAATCAGTTCTCCCTGATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA CAGGTGCAGCTGCAGCAGTTGGGCGCAGGACTGTTGAAGCCTCCGGAGACCCTGTCCCTCTCCTGCACTGTGTAT QVQLQQLGAGLLKPPETLSLSCTVY GGTGGGTCCTTCAGTGGTTACTAC GGSFSGYY TGGAACTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGG WNWIRQPPGKGLEWIG AATATCCATCATAGTGGAAGC NIHHSGS ACCAACTACACCCCGTCCCTCAGGAGTCGAGTCACCATATCAATAGACACGTCCAAGAATCAGTTCTCCCTGATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT TNYTPSLRSRVTISIDTSKNQFSLMLTSVTAADTAVYYC GTGAGGAAA VRK TGTGTGAGGAAAACTGGGAATCGGGGTGCTTTTGATCTCTGG CVRKTGNRGAFDLW D3_3 gcTTTTGATCTCTGG ?FDLW ACTGGGAATCGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA TGNRGAFDLWGQGTMITVSS CAGGTGCAGCTGCAGCAGTTGGGCGCAGGACTGTTGAAGCCTCCGGAGACCCTGTCCCTCTCCTGCACTGTGTATGGTGGGTCCTTC------AGTGGTTACTACTGGAACTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAATATCCATCATAGTGGAAGC---------------ACCAACTACACCCCGTCCCTCAGGAGTCGAGTCACCATATCAATAGACACGTCCAAGAATCAGTTCTCCCTGATGTTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAAAACTGGGAATCGGGGTGCTTTTGATCTCTGGGGCCAAGGGACAATGATCACCGTCTCCTCA +56 AF262200 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9999308482878386 1 0 0 310(289-331) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCCGGTGTGTCCTTCAGTGGATACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCACAGTGGCTCCACCATCAACAACCCGTCCCTCCAGAGACGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTCTATTACTGTGTGAGGAGAACTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCC QVQLQQWGAGLLKPSETLSLSCAVS GGTGTGTCCTTCAGTGGATACTTC GVSFSGYF TGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCACTCACAGTGGCTCCACC EITHSGST ATCAACAACCCGTCCCTCCAGAGACGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTCTATTACTGT INNPSLQRRVITSVDAAKNQFSLVLTSVTAADTAVYYC GTGAGGAGA VRR TGTGTGAGGAGAACTGGGGATCGGGGTGCCTTTGATGTCTGG CVRRTGDRGAFDVW D7_27 AgaACTGGGGAt ?TG? ACTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA TGDRGAFDVWGQGAMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCAGCTGCGCTGTCTCCGGTGTGTCCTTC------AGTGGATACTTCTGGACTTGGATCCGGCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATC---------ACTCACAGTGGCTCCACCATCAACAAC------CCGTCCCTCCAGAGACGAGTCATCACATCAGTTGACGCGGCCAAGAATCAATTCTCCCTGGTGCTGACTTCTGTGACCGCCGCGGACACGGCTGTCTATTACTGTGTGAGGAGAACTGGGGATCGGGGTGCCTTTGATGTCTGGGGCCAAGGGGCAATGGTCACCGTCTCTTCA +55 AF262199 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9850047896540554 1 0 0 310(289-331) CAGGTGCAGCTACAGCAGTGGGGCGCAGCACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCAGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCAATCATAGTGGCACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCGCCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACACTGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGCACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAALVKPSETLSLTCAVS GGTGTGTCCTTCAGTGATTACTAC GVSFSDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAGTCAATCATAGTGGCACCACCATCAACAAC EVNHSGTTINN CCGTCCCTCAAGAGTCGAGTCGCCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLKSRVATSVDTSKNQFSLMLTSVTAADTAVYYC GTGAGGAAT VRN TGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGG CVRNTGNRGAFDIW D3_3 gcTTTTGATATCTGG ?FDIW ACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACACTGGTCACCGTCTCCTCA TGNRGAFDIWGQGTLVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGCACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------AGTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAGTCAATCATAGTGGCACCACCATCAACAAC---------------CCGTCCCTCAAGAGTCGAGTCGCCACATCAGTTGACACGTCCAAGAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACACTGGTCACCGTCTCCTCA +57 AF262201 V4-34,J3-01 inter-subtype recombinant J3-01,V4-34 recombinant 0.9963132052911561 1 0 0 310(293-327) CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTCACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGTACCACCATCAACAACCCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCT QVQLQQWGAGLVKPSETLSLTCAVS GGTGTGTCCTTCACTGATTACTAC GVSFTDYY TGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGT WTWIRQPPGKGLEWIG GAAATCACTCATAGTGGTACCACCATCAACAAC EITHSGTTINN CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGT PSLKSRVTTSVDTSNNQFSLMLTSVTAADTAVYYC GTGAGGAAT VRN TGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGG CVRNTGNRGAFDIW D3_3 gcTTTTGATATCTGG ?FDIW ACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA TGNRGAFDIWGQGTMVTVSS CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGTGTCCTTC------ACTGATTACTACTGGACTTGGATCCGCCAGCCCCCAGGAAAGGGGCTGGAGTGGATTGGTGAAATCACTCATAGTGGTACCACCATCAACAAC---------------CCGTCCCTCAAGAGTCGAGTCACCACATCAGTTGACACGTCCAACAATCAGTTCTCCCTTATGCTGACTTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGTGAGGAATACTGGGAATCGGGGTGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCA \ No newline at end of file