diff --git a/src/codecs/jats/__file_snapshots__/06908fc3-73df-1014-bb56-a21daa237ef0.json b/src/codecs/jats/__file_snapshots__/06908fc3-73df-1014-bb56-a21daa237ef0.json index 1eb2ee156..33f9830bd 100644 --- a/src/codecs/jats/__file_snapshots__/06908fc3-73df-1014-bb56-a21daa237ef0.json +++ b/src/codecs/jats/__file_snapshots__/06908fc3-73df-1014-bb56-a21daa237ef0.json @@ -232,6 +232,7 @@ "pageStart": 21, "title": "Comparing g: multivariate analysis of genetic variation in multiple populations", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -338,6 +339,7 @@ "pageStart": 285, "title": "Chromosome-scale selective sweeps shape caenorhabditis elegans genomic diversity", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -390,6 +392,7 @@ "pageStart": 9, "title": "The adaptive landscape as a conceptual bidge between micro and macroevolution", "meta": { + "yearPublished": "2001", "publicationType": "journal" } }, @@ -467,6 +470,7 @@ "pageStart": 2451, "title": "Understanding the evolution and stability of the g-matrix", "meta": { + "yearPublished": "2008", "publicationType": "journal" } }, @@ -515,6 +519,7 @@ "pageStart": 194, "title": "A brief note on overlapping confidence intervals", "meta": { + "yearPublished": "2002", "publicationType": "journal" } }, @@ -590,6 +595,7 @@ "pageStart": 347, "title": "Phenotypic plasticity drives phenological changes in a mediterranean blue tit population", "meta": { + "yearPublished": "2022", "publicationType": "journal" } }, @@ -637,6 +643,7 @@ "pageStart": 2056, "title": "The distribution of genetic variance across phenotypic space and the response to selection", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -706,6 +713,7 @@ }, "title": "Bigger is fitter? quantitative genetic decomposition of selection reveals an adaptive evolutionary decline of body mass in a wild rodent population", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -771,6 +779,7 @@ }, "title": "Evolution of the additive genetic variance-covariance matrix under continuous directional selection on a complex behavioural phenotype", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -839,6 +848,7 @@ "pageStart": 6730, "title": "The species, sex, and stage specificity of a caenorhabditis sex pheromone", "meta": { + "yearPublished": "2007", "publicationType": "journal" } }, @@ -936,6 +946,7 @@ "pageStart": 2811, "title": "Partial selfing can reduce genetic loads while maintaining diversity during evolution", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -983,6 +994,7 @@ "pageStart": 142, "title": "The opportunity for balancing selection in experimental populations of caenorhabditis elegans", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -1031,6 +1043,7 @@ "pageStart": 3381, "title": "The temporal distribution of directional gradients under selection for an optimum", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -1093,6 +1106,7 @@ }, "title": "Adaptation, plasticity, and extinction in a changing environment: towards a predictive theory", "meta": { + "yearPublished": "2010", "publicationType": "journal" } }, @@ -1150,6 +1164,7 @@ "pageStart": 2319, "title": "Estimating the variation, autocorrelation, and environmental sensitivity of phenotypic selection", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -1224,6 +1239,7 @@ "pageStart": 420, "title": "Rapid evolution in salmon life history induced by direct and indirect effects of fishing", "meta": { + "yearPublished": "2022", "publicationType": "journal" } }, @@ -1268,6 +1284,7 @@ "pageStart": 451, "title": "Neuronal substrates of complex behavior in c. elegans", "meta": { + "yearPublished": "2005", "publicationType": "journal" } }, @@ -1328,6 +1345,7 @@ }, "title": "Adaptation to temporally fluctuating environments by the evolution of maternal effects", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -1376,6 +1394,7 @@ "pageStart": 2891, "title": "Phenotypic plasticity facilitates mutational variance, genetic variance, and evolvability along the major axis of environmental variation", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -1424,6 +1443,7 @@ "pageStart": 151, "title": "Constraint to adaptive evolution in response to global warming", "meta": { + "yearPublished": "2001", "publicationType": "journal" } }, @@ -1533,6 +1553,7 @@ "pageStart": 1497, "title": "The importance of cgmp signaling in sensory cilia for body size regulation in caenorhabditis elegans", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -1589,6 +1610,7 @@ "pageStart": 1091, "title": "Regulation of body size and behavioral state of c. elegans by sensory perception and the egl-4 cgmp-dependent protein kinase", "meta": { + "yearPublished": "2002", "publicationType": "journal" } }, @@ -1667,6 +1689,7 @@ }, "title": "Non-adaptive plasticity potentiates rapid adaptive evolution of gene expression in nature", "meta": { + "yearPublished": "2015", "publicationType": "other" } }, @@ -1735,6 +1758,7 @@ "pageStart": 394, "title": "Adaptive versus nonadaptive phenotypic plasticity and the potential for contemporary adaptation in new environments", "meta": { + "yearPublished": "2007", "publicationType": "journal" } }, @@ -1777,6 +1801,7 @@ "pageStart": 201, "title": "When does evolution by natural selection prevent extinction?", "meta": { + "yearPublished": "1995", "publicationType": "journal" } }, @@ -1823,6 +1848,7 @@ "pageStart": "E218", "title": "Demographic and genetic constraints on evolution", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -1871,6 +1897,7 @@ "pageStart": 581, "title": "The spandrels of san marco and the panglossian paradigm: a critique of the adaptationist programme", "meta": { + "yearPublished": "1979", "publicationType": "journal" } }, @@ -1964,6 +1991,7 @@ }, "title": "Slower environmental change hinders adaptation from standing genetic variation", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -2001,6 +2029,7 @@ "pageStart": 1, "title": "Mcmc methods for multi-response generalized linear mixed models: The mcmcglmm r package", "meta": { + "yearPublished": "2010", "publicationType": "journal" } }, @@ -2049,6 +2078,7 @@ "pageStart": 483, "title": "Solving the paradox of stasis: squashed stabilizing selection and the limits of detection", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -2095,6 +2125,7 @@ "pageStart": 604, "title": "Genetic gene expression changes during environmental adaptations tend to reverse plastic changes even after the correction for statistical nonindependence", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -2159,6 +2190,7 @@ "pageStart": 3, "title": "Measurement and meaning in biology", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -2224,6 +2256,7 @@ "pageStart": 464, "title": "Natural selection mediated by seasonal time constraints increases the alignment between evolvability and developmental plasticity", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -2276,6 +2309,7 @@ "pageStart": 1639, "title": "Evolution and stability of the g matrix in an adaptive landscape with a moving optimum", "meta": { + "yearPublished": "2004", "publicationType": "journal" } }, @@ -2333,6 +2367,7 @@ "pageStart": 727, "title": "The mutation matrix and the evolution of evolvability", "meta": { + "yearPublished": "2007", "publicationType": "journal" } }, @@ -2385,6 +2420,7 @@ "pageStart": 3709, "title": "Epistasis and natural selection shape the mutational architecture of complex traits", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -2432,6 +2468,7 @@ "pageStart": 3938, "title": "Restoring ancestral phenotypes is a general pattern in gene expression evolution during adaptation to new environments in tribolium castaneum", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -2510,6 +2547,7 @@ "pageStart": 1683, "title": "Antler size in red deer: heritability and selection but no evolution", "meta": { + "yearPublished": "2002", "publicationType": "journal" } }, @@ -2543,6 +2581,7 @@ "pageStart": 402, "title": "Quantitative genetic analysis of multivariate evolution, applied to brain: body size allometry", "meta": { + "yearPublished": "1979", "publicationType": "journal" } }, @@ -2580,6 +2619,7 @@ "pageStart": 203, "title": "The genetic covariance between characters maintained by pleiotropic mutations", "meta": { + "yearPublished": "1980", "publicationType": "journal" } }, @@ -2617,6 +2657,7 @@ "pageStart": 1435, "title": "Adaptation to an extraordinary environment by evolution of phenotypic plasticity and genetic assimilation", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -2660,6 +2701,7 @@ "pageStart": 1210, "title": "On the measurement of selection on correlated characters", "meta": { + "yearPublished": "1983", "publicationType": "journal" } }, @@ -2688,6 +2730,7 @@ }, "title": "emmeans: Estimated Marginal Means, aka Least-Squares Means", "meta": { + "yearPublished": "2021", "publicationType": "other" } }, @@ -2762,6 +2805,7 @@ "pageStart": 7427, "title": "Mate searching in caenorhabditis elegans: a genetic model for sex drive in a simple invertebrate", "meta": { + "yearPublished": "2004", "publicationType": "journal" } }, @@ -2802,6 +2846,7 @@ }, "title": "Genetics and Analysis of Quantitative Traits", "meta": { + "yearPublished": "1998", "publicationType": "book" } }, @@ -2863,6 +2908,7 @@ }, "title": "Variation in mutational (co)variances", "meta": { + "yearPublished": "2022", "publicationType": "other" } }, @@ -2937,6 +2983,7 @@ "pageStart": 778282, "title": "Phenotypic stasis with genetic divergence", "meta": { + "yearPublished": "2019", "publicationType": "other" } }, @@ -2992,6 +3039,7 @@ "pageStart": 2429, "title": "The evolution of phenotypic plasticity in response to temperature stress", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -3043,6 +3091,7 @@ "pageStart": 1255, "title": "Catch me if you can: adaptation from standing genetic variation to a moving phenotypic optimum", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -3081,6 +3130,7 @@ "pageStart": 2050, "title": "Evolutionary quantitative genetics of nonlinear developmental systems", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -3128,6 +3178,7 @@ "pageStart": 396, "title": "Analogues of the fundamental and secondary theorems of selection, assuming a log-normal distribution of expected fitness", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -3186,6 +3237,7 @@ "pageStart": 2277, "title": "The danger of applying the breeder’s equation in observational studies of natural populations", "meta": { + "yearPublished": "2010", "publicationType": "journal" } }, @@ -3273,6 +3325,7 @@ "pageStart": 2399, "title": "The prediction of adaptive evolution: empirical application of the secondary theorem of selection and comparison with the breeder’s equation", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -3329,6 +3382,7 @@ "pageStart": 13452, "title": "Plastic responses to novel environments are biased towards phenotype dimensions with high additive genetic variation", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -3477,6 +3531,7 @@ "pageStart": 1663, "title": "Polygenicity and epistasis underlie fitness-proximal traits in the caenorhabditis elegans multiparental experimental evolution (cemee) panel", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -3564,6 +3619,7 @@ "pageStart": 459, "title": "Phenotypic plasticity’s impacts on diversification and speciation", "meta": { + "yearPublished": "2010", "publicationType": "journal" } }, @@ -3604,6 +3660,7 @@ }, "title": "Evolution of Genetic Variance-Covariance Structure", "meta": { + "yearPublished": "2006", "publicationType": "book" } }, @@ -3657,6 +3714,7 @@ "pageStart": 1137, "title": "Inbreeding changes the shape of the genetic covariance matrix in drosophila melanogaster", "meta": { + "yearPublished": "2001", "publicationType": "journal" } }, @@ -3705,6 +3763,7 @@ "pageStart": 1209, "title": "Visualizing multivariate selection", "meta": { + "yearPublished": "1989", "publicationType": "journal" } }, @@ -3783,6 +3842,7 @@ "pageStart": 2357, "title": "Complex heterochrony underlies the evolution of caenorhabditis elegans hermaphrodite sex allocation", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -3820,6 +3880,7 @@ "pageStart": 129, "title": "Fisher’s ‘fundamental theorem’ made clear", "meta": { + "yearPublished": "1972", "publicationType": "journal" } }, @@ -3877,6 +3938,7 @@ "pageStart": 1433, "title": "The role of phenotypic plasticity in driving genetic evolution", "meta": { + "yearPublished": "2003", "publicationType": "journal" } }, @@ -3939,6 +4001,7 @@ }, "title": "How differing modes of non-genetic inheritance affect population viability in fluctuating environments", "meta": { + "yearPublished": "2019", "publicationType": "other" } }, @@ -3985,6 +4048,7 @@ "pageStart": "E000", "title": "What kind of maternal effects are selected for in fluctuating environments?", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -4023,6 +4087,7 @@ "pageStart": 616, "title": "The measurement of selection on quantitative traits: biases due to environmental covariances between traits and fitness", "meta": { + "yearPublished": "1992", "publicationType": "journal" } }, @@ -4056,6 +4121,7 @@ }, "title": "The spectrum of genetic variation", "meta": { + "yearPublished": "1968", "publicationType": "book" } }, @@ -4113,6 +4179,7 @@ "pageStart": 372, "title": "Selection at linked sites shapes heritable phenotypic variation in c. elegans", "meta": { + "yearPublished": "2010", "publicationType": "journal" } }, @@ -4150,6 +4217,7 @@ "pageStart": 1766, "title": "Adaptive radiaation along genetic lines of least resistance", "meta": { + "yearPublished": "1996", "publicationType": "journal" } }, @@ -4192,6 +4260,7 @@ "pageStart": 461, "title": "Thinking about the evolution of complex traits in the era of genome-wide association studies", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -4253,6 +4322,7 @@ "pageStart": 1260, "title": "Changes in genetic variances and covariances: G whiz!", "meta": { + "yearPublished": "1995", "publicationType": "journal" } }, @@ -4331,6 +4401,7 @@ "pageStart": 969, "title": "Environmental and evolutionary drivers of the modular gene regulatory network underlying phenotypic plasticity for stress resistance in the nematode ¡em¿caenorhabditis remanei¡/em¿", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -4353,6 +4424,7 @@ }, "title": "RStan: the R interface to Stan", "meta": { + "yearPublished": "2018", "publicationType": "other" } }, @@ -4404,6 +4476,7 @@ "pageStart": 320, "title": "Comparative quantitative genetics: evolution of the g matrix", "meta": { + "yearPublished": "2002", "publicationType": "journal" } }, @@ -4435,6 +4508,7 @@ }, "title": "Maintenance of C. elegans", "meta": { + "yearPublished": "1999", "publicationType": "book" } }, @@ -4493,6 +4567,7 @@ "pageStart": 1188, "title": "Estimating uncertainty in multivariate responses to selection", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -4636,6 +4711,7 @@ "pageStart": 562, "title": "Correlational selection in the age of genomics", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -4704,6 +4780,7 @@ "pageStart": 592, "title": "High-throughput behavioral analysis in c. elegans", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -4783,6 +4860,7 @@ }, "title": "Evolution of outcrossing in experimental populations of Caenorhabditis elegans", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -4847,6 +4925,7 @@ "pageStart": 691, "title": "Experimental evolution with caernohabditis nematodes", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -4911,6 +4990,7 @@ "pageStart": 93, "title": "Reproductive assurance drives transitions to self-fertilization in experimental caenorhabditis elegans", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -4961,6 +5041,7 @@ "pageStart": 505, "title": "Genotype-environment interaction and the evolution of phenotypic plasticity", "meta": { + "yearPublished": "1985", "publicationType": "journal" } }, @@ -5001,6 +5082,7 @@ }, "title": "Evolution and Selection of Quantitative Traits", "meta": { + "yearPublished": "2018", "publicationType": "book" } }, @@ -5068,6 +5150,7 @@ "pageStart": "E108", "title": "Evolution of genetic variance during adaptive radiation", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -5125,6 +5208,7 @@ "pageStart": 1968, "title": "Persistence of changes in the genetic covariance matrix after a bottleneck", "meta": { + "yearPublished": "2002", "publicationType": "journal" } }, @@ -5168,6 +5252,7 @@ "pageStart": 117, "title": "C. elegans locomotion: small circuits, complex functions", "meta": { + "yearPublished": "2015", "publicationType": "journal" } } diff --git a/src/codecs/jats/__file_snapshots__/48c60452-6c66-1014-adf9-c7b61873ecd3.json b/src/codecs/jats/__file_snapshots__/48c60452-6c66-1014-adf9-c7b61873ecd3.json index 22646f3d4..8ea19e106 100644 --- a/src/codecs/jats/__file_snapshots__/48c60452-6c66-1014-adf9-c7b61873ecd3.json +++ b/src/codecs/jats/__file_snapshots__/48c60452-6c66-1014-adf9-c7b61873ecd3.json @@ -261,6 +261,7 @@ }, "title": "R package “circular”", "meta": { + "yearPublished": "2022", "publicationType": "other" } }, @@ -340,6 +341,7 @@ "pageStart": 728, "title": "Gongylolepis martiana, an Asteraceae pollinated by bats in the Amazon", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -426,6 +428,7 @@ "pageStart": 587, "title": "Circadian regulation of sunflower heliotropism, floral orientation, and pollinator visits", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -486,6 +489,7 @@ "pageStart": 229, "title": "Light control of elongation of filament in sunflower (Helianthus annuus L", "meta": { + "yearPublished": "1990", "publicationType": "journal" } }, @@ -553,6 +557,7 @@ "pageStart": 20160256, "title": "Time is honey: circadian clocks of bees and flowers and how their interactions may influence ecological communities", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -620,6 +625,7 @@ "pageStart": 776826, "title": "The Circadian Clock in Lepidoptera", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -662,6 +668,7 @@ "pageStart": 89, "title": "Pollination ecology of Bidens pilosa L. (Asteraceae)", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -695,6 +702,7 @@ "pageStart": 220, "title": "Endogene Tagesrhythmik und Photoperiodismus bei Kalanchoë blössfedliana", "meta": { + "yearPublished": "1953", "publicationType": "journal" } }, @@ -736,6 +744,7 @@ "pageStart": 242, "title": "The Hormonal Regulation of Flower Development", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -858,6 +867,7 @@ "pageStart": 868, "title": "Flower orientation influences floral temperature, pollinator visits and plant fitness", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -908,6 +918,7 @@ "pageStart": 37, "title": "The foraging activity of honey bees Apis mellifera and non-Apis bees on hybrid sunflowers (Helianthus annuus) and its influence on cross-pollination and seed set", "meta": { + "yearPublished": "2000", "publicationType": "journal" } }, @@ -1023,6 +1034,7 @@ "pageStart": 630, "title": "Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage", "meta": { + "yearPublished": "2005", "publicationType": "journal" } }, @@ -1082,6 +1094,7 @@ "pageStart": 979, "title": "Concordance of the circadian clock with the environment is necessary to maximize fitness in natural populations", "meta": { + "yearPublished": "2008", "publicationType": "journal" } }, @@ -1182,6 +1195,7 @@ }, "title": "Classification of Compositae", "meta": { + "yearPublished": "2009", "publicationType": "book" } }, @@ -1232,6 +1246,7 @@ "pageStart": 598, "title": "Integrating circadian dynamics with physiological processes in plants", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -1309,6 +1324,7 @@ "pageStart": 247, "title": "The pollination biology of Pseudostifftia kingii H.Rob. (Asteraceae), a rare endemic Brazilian species with uniflorous capitula", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -1359,6 +1375,7 @@ "pageStart": 76, "title": "Circadian clocks and the measurement of daylength in seasonal reproduction", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -1409,6 +1426,7 @@ "pageStart": 550, "title": "Photoperiodic control of flowering: not only by coincidence", "meta": { + "yearPublished": "2006", "publicationType": "journal" } }, @@ -1468,6 +1486,7 @@ "pageStart": 59, "title": "Circadian clock during plant development", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -1554,6 +1573,7 @@ "pageStart": 2006, "title": "Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice", "meta": { + "yearPublished": "2002", "publicationType": "journal" } }, @@ -1627,6 +1647,7 @@ }, "title": "Evolution of Compositae Flowers", "meta": { + "yearPublished": "2009", "publicationType": "book" } }, @@ -1776,6 +1797,7 @@ "pageStart": 134, "title": "Habitat-Specific Clock Variation and Its Consequence on Reproductive Fitness", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -1839,6 +1861,7 @@ }, "title": "The Clock Keeps on Ticking: Emerging Roles for Circadian Regulation in the Control of Fungal Physiology and Pathogenesis", "meta": { + "yearPublished": "2018", "publicationType": "book" } }, @@ -1889,6 +1912,7 @@ "pageStart": 307, "title": "Developmental morphology and anatomy of the reproductive structures in sunflower (Helianthus annuus): a unified temporal scale", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -1948,6 +1972,7 @@ "pageStart": 229, "title": "Histological development of the sunflower fruit pericarp as affected by pre- and early post-anthesis canopy shading", "meta": { + "yearPublished": "2007", "publicationType": "journal" } }, @@ -2019,6 +2044,7 @@ }, "title": "Hormonal influence on photocontrol of the protandry in the genus Helianthus", "meta": { + "yearPublished": "2000", "publicationType": "other" } }, @@ -2105,6 +2131,7 @@ "pageStart": 14083, "title": "A fully resolved backbone phylogeny reveals numerous dispersals and explosive diversifications throughout the history of Asteraceae", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -2155,6 +2182,7 @@ "pageStart": 155, "title": "Photoperiodic sensitivity of inflorescence initiation and development in sunflower", "meta": { + "yearPublished": "1981", "publicationType": "journal" } }, @@ -2195,6 +2223,7 @@ "pageStart": 811, "title": "Comprehensive Insight into Gibberellin- and Jasmonate-Mediated Stamen Development", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -2234,6 +2263,7 @@ }, "title": "The Plant Circadian Oscillator", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -2404,6 +2434,7 @@ }, "title": "Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules", "meta": { + "yearPublished": "2008", "publicationType": "journal" } }, @@ -2517,6 +2548,7 @@ "pageStart": 1049, "title": "Enhanced Fitness Conferred by Naturally Occurring Variation in the Circadian Clock", "meta": { + "yearPublished": "2003", "publicationType": "journal" } }, @@ -2603,6 +2635,7 @@ "pageStart": 1367, "title": "Circadian Clock Mutation Disrupts Estrous Cyclicity and Maintenance of Pregnancy", "meta": { + "yearPublished": "2004", "publicationType": "journal" } }, @@ -2653,6 +2686,7 @@ "pageStart": 315, "title": "Circadian Interactomics: How Research Into Protein-Protein Interactions Beyond the Core Clock Has Influenced the Model of Circadian Timekeeping", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -2775,6 +2809,7 @@ "pageStart": 883, "title": "Circadian Clock in Arabidopsis thaliana Determines Flower Opening Time Early in the Morning and Dominantly Closes Early in the Afternoon", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -2817,6 +2852,7 @@ "pageStart": 197, "title": "The Roles of Phenology and Reward Structure in the Pollination Biology of Wild Sunflower (Helianthus annuus L., Asteraceae)", "meta": { + "yearPublished": "1990", "publicationType": "journal" } }, @@ -2894,6 +2930,7 @@ "pageStart": 8660, "title": "Resonating circadian clocks enhance fitness in cyanobacteria", "meta": { + "yearPublished": "1998", "publicationType": "journal" } }, @@ -2944,6 +2981,7 @@ "pageStart": 1, "title": "The generative area as the site of floret initiation in the sunflower capitulum and its integration to predict floret number", "meta": { + "yearPublished": "1985", "publicationType": "journal" } }, @@ -2975,6 +3013,7 @@ ], "title": "Systematics, Evolution, and Biogeography of Compositae, Madroño", "meta": { + "yearPublished": "2009", "publicationType": "other" } }, @@ -3025,6 +3064,7 @@ "pageStart": 261, "title": "The Entrainment of Circadian Oscillations by Light and Their Role as Photoperiodic Clocks", "meta": { + "yearPublished": "1964", "publicationType": "journal" } }, @@ -3048,6 +3088,7 @@ "pageStart": 167, "title": "Observations on Morphological Characters and Flowering Processes in the Sunflower (Helianthus annuus L", "meta": { + "yearPublished": "1940", "publicationType": "journal" } }, @@ -3098,6 +3139,7 @@ "pageStart": 807, "title": "Temperature effect on entrainment, phase shifting, and amplitude of circadian clocks and its molecular bases", "meta": { + "yearPublished": "2002", "publicationType": "journal" } }, @@ -3148,6 +3190,7 @@ "pageStart": 600, "title": "The segmentation clock: inherited trait or universal design principle?", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -3207,6 +3250,7 @@ "pageStart": 7742, "title": "Demasking biological oscillators: properties and principles of entrainment exemplified by the Neurospora circadian clock", "meta": { + "yearPublished": "2005", "publicationType": "journal" } }, @@ -3266,6 +3310,7 @@ "pageStart": 287, "title": "Circadian rhythm as a therapeutic target", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -3325,6 +3370,7 @@ "pageStart": 1343, "title": "Circadian Nature of a Rhythm Expressed by an Invertaseless Strain of Neurospora crassa", "meta": { + "yearPublished": "1966", "publicationType": "journal" } }, @@ -3376,6 +3422,7 @@ "pageStart": 671, "title": "NIH Image to ImageJ: 25 years of image analysis", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -3422,6 +3469,7 @@ "pageStart": 67, "title": "Anatomy and Morphology of Sunflower", "meta": { + "yearPublished": "2015", "publicationType": "book" } }, @@ -3499,6 +3547,7 @@ "pageStart": 686, "title": "Natural selection against a circadian clock gene mutation in mice", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -3576,6 +3625,7 @@ "pageStart": 498, "title": "Three psychophilous Asteraceae species with distinct reproductive mechanisms in southeastern Brazil", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -3625,6 +3675,7 @@ "pageStart": 1790, "title": "Foraging Strategy of Honeybee Colonies in a Temperate Deciduous Forest", "meta": { + "yearPublished": "1982", "publicationType": "journal" } }, @@ -3711,6 +3762,7 @@ "pageStart": 480, "title": "Light inputs shape the Arabidopsis circadian system", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -3958,6 +4010,7 @@ "pageStart": 1686, "title": "Welcome to the Tidyverse", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -4021,6 +4074,7 @@ }, "title": "The dynamic nature and regulation of the root clock", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -4071,6 +4125,7 @@ "pageStart": 265, "title": "Living by the calendar: how plants know when to flower", "meta": { + "yearPublished": "2003", "publicationType": "journal" } }, @@ -4158,6 +4213,7 @@ "pageStart": 1058, "title": "Silencing Nicotiana attenuata LHY and ZTL alters circadian rhythms in flowers", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -4245,6 +4301,7 @@ "pageStart": 180, "title": "Fitness consequences of altering floral circadian oscillations for Nicotiana attenuata", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -4352,6 +4409,7 @@ }, "title": "Phyllotactic patterning of gerbera flower heads", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -4432,6 +4490,7 @@ }, "title": "Strengths and limitations of period estimation methods for circadian data", "meta": { + "yearPublished": "2014", "publicationType": "journal" } } diff --git a/src/codecs/jats/__file_snapshots__/81445f02-6bf5-1014-892a-9f5909cc27c1.json b/src/codecs/jats/__file_snapshots__/81445f02-6bf5-1014-892a-9f5909cc27c1.json index 40467b139..9d317def3 100644 --- a/src/codecs/jats/__file_snapshots__/81445f02-6bf5-1014-892a-9f5909cc27c1.json +++ b/src/codecs/jats/__file_snapshots__/81445f02-6bf5-1014-892a-9f5909cc27c1.json @@ -470,6 +470,7 @@ "pageStart": 21, "title": "The Role of Estrogen Receptors in Cardiovascular Disease", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -526,6 +527,7 @@ "pageStart": 1, "title": "Iron status in athletic females, a shift in perspective on an old paradigm", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -613,6 +615,7 @@ "pageStart": 1477, "title": "Estrogen effects on vascular inflammation are age dependent: role of estrogen receptors", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -709,6 +712,7 @@ "pageStart": 335, "title": "Protective effects of mitochondrion- targeted peptide SS-31 against hind limb ischemia-reperfusion injury", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -822,6 +826,7 @@ "pageStart": 137, "title": "Iron accumulation in macrophages promotes the formation of foam cells and development of atherosclerosis", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -932,6 +937,7 @@ "pageStart": 21, "title": "Deferasirox-Dependent Iron Chelation Enhances Mitochondrial Dysfunction and Restores p53 Signaling by Stabilization of p53 Family Members in Leukemic Cells", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -974,6 +980,7 @@ "pageStart": 1080, "title": "Strategy for Treatment of Infected Diabetic Foot Ulcers", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -1070,6 +1077,7 @@ "pageStart": 1006, "title": "Iron-Dependent Regulation of MDM2 Influences p53 Activity and Hepatic Carcinogenesis", "meta": { + "yearPublished": "2010", "publicationType": "journal" } }, @@ -1157,6 +1165,7 @@ "pageStart": 5513, "title": "Differential regulation of estrogen receptor alpha turnover and transactivation by Mdm2 and stress-inducing agents", "meta": { + "yearPublished": "2007", "publicationType": "journal" } }, @@ -1271,6 +1280,7 @@ "pageStart": 77, "title": "Role of direct interaction in BRCA1 inhibition of estrogen receptor activity", "meta": { + "yearPublished": "2001", "publicationType": "journal" } }, @@ -1331,6 +1341,7 @@ "pageStart": 3513, "title": "Vascular endothelial estrogen receptor alpha is modulated by estrogen status and related to endothelial function and endothelial nitric oxide synthase in healthy women", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -1436,6 +1447,7 @@ "pageStart": 706, "title": "High Glucose Promotes Epithelial- Mesenchymal Transition of Uterus Endometrial Cancer Cells by Increasing ER/GLUT4-Mediated VEGF Secretion", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -1505,6 +1517,7 @@ "pageStart": 591, "title": "Quality-of-life and depressive symptoms in postmenopausal women after receiving hormone therapy: results from the Heart and Estrogen/Progestin Replacement Study (HERS) trial", "meta": { + "yearPublished": "2002", "publicationType": "journal" } }, @@ -1556,6 +1569,7 @@ "pageStart": 25, "title": "Oncoprotein MDM2 is a ubiquitin ligase E3 for tumor suppressor p53", "meta": { + "yearPublished": "1997", "publicationType": "journal" } }, @@ -1661,6 +1675,7 @@ "pageStart": 398, "title": "Estrogen regulates iron homeostasis through governing hepatic hepcidin expression via an estrogen response element", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -1712,6 +1727,7 @@ "pageStart": 458, "title": "Dancing with sex hormones, could iron contribute to the gender difference in osteoporosis?", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -1813,6 +1829,7 @@ }, "title": "Estrogen regulates hepcidin expression via GPR30-BMP6-dependent signaling in hepatocytes", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -1891,6 +1908,7 @@ "pageStart": 2199, "title": "Molecular mechanism of inhibitory aryl hydrocarbon receptor-estrogen receptor/Sp1 cross talk in breast cancer cells", "meta": { + "yearPublished": "2006", "publicationType": "journal" } }, @@ -1995,6 +2013,7 @@ "pageStart": 5118, "title": "Iron regulatory protein deficiency compromises mitochondrial function in murine embryonic fibroblasts", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -2028,6 +2047,7 @@ "pageStart": 220, "title": "Hormone-replacement therapy: current thinking", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -2079,6 +2099,7 @@ "pageStart": 129, "title": "Intrinsic and Extrinsic Factors Governing the Transcriptional Regulation of ESR1", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -2166,6 +2187,7 @@ "pageStart": 1128, "title": "Fibroblast growth factor-2/platelet-derived growth factor enhances atherosclerotic plaque stability", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -2280,6 +2302,7 @@ "pageStart": 149, "title": "Estrogen prevent atherosclerosis by attenuating endothelial cell pyroptosis via activation of estrogen receptor alpha- mediated autophagy", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -2331,6 +2354,7 @@ "pageStart": 709, "title": "Macrophages in atherosclerosis: a dynamic balance", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -2381,6 +2405,7 @@ "pageStart": 107387, "title": "The endothelial mineralocorticoid receptor: Contributions to sex differences in cardiovascular disease", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -2414,6 +2439,7 @@ "pageStart": 687, "title": "Estrogen signaling and cardiovascular disease", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -2510,6 +2536,7 @@ "pageStart": 2090, "title": "Hepcidin regulates cellular iron efflux by binding to ferroportin and inducing its internalization", "meta": { + "yearPublished": "2004", "publicationType": "journal" } }, @@ -2570,6 +2597,7 @@ "pageStart": 4605, "title": "Molecular and cellular determinants of estrogen receptor alpha expression", "meta": { + "yearPublished": "2004", "publicationType": "journal" } }, @@ -2666,6 +2694,7 @@ "pageStart": 934, "title": "Estrogen contributes to regulating iron metabolism through governing ferroportin signaling via an estrogen response element", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -2780,6 +2809,7 @@ "pageStart": 16457, "title": "Myeloid-specific estrogen receptor alpha deficiency impairs metabolic homeostasis and accelerates atherosclerotic lesion development", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -2831,6 +2861,7 @@ "pageStart": 7, "title": "Oophorectomy, estrogen, and dementia: a 2014 update", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -2945,6 +2976,7 @@ "pageStart": 321, "title": "Risks and benefits of estrogen plus progestin in healthy postmenopausal women: principal results From the Women’s Health Initiative randomized controlled trial", "meta": { + "yearPublished": "2002", "publicationType": "journal" } }, @@ -3050,6 +3082,7 @@ "pageStart": 259, "title": "MDM2 enhances the function of estrogen receptor alpha in human breast cancer cells", "meta": { + "yearPublished": "2001", "publicationType": "journal" } }, @@ -3083,6 +3116,7 @@ "pageStart": 1293, "title": "Iron and the Sex Difference in Heart Disease Risk", "meta": { + "yearPublished": "1981", "publicationType": "journal" } }, @@ -3116,6 +3150,7 @@ "pageStart": 190, "title": "Are menstruating women protected from heart disease because of, or in spite of, estrogen? Relevance to the iron hypothesis", "meta": { + "yearPublished": "2003", "publicationType": "journal" } }, @@ -3158,6 +3193,7 @@ "pageStart": 1, "title": "Mechanisms that Increase Stability of Estrogen Receptor Alpha in Breast Cancer", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -3227,6 +3263,7 @@ "pageStart": 773, "title": "Estrogen-Mediated Gaseous Signaling Molecules in Cardiovascular Disease", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -3341,6 +3378,7 @@ "pageStart": 2681, "title": "Atherosclerosis is aggravated by iron overload and ameliorated by dietary and pharmacological iron restriction", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -3437,6 +3475,7 @@ "pageStart": 171, "title": "BioCycle study: design of the longitudinal study of the oxidative stress and hormone variation during the menstrual cycle", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -3514,6 +3553,7 @@ "pageStart": 254, "title": "CTRP12 ameliorates atherosclerosis by promoting cholesterol efflux and inhibiting inflammatory response via the miR-155-5p/LXRα pathway", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -3591,6 +3631,7 @@ "pageStart": 1201, "title": "Iron Together with Lipid Downregulates Protein Levels of Ceruloplasmin in Macrophages Associated with Rapid Foam Cell Formation", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -3650,6 +3691,7 @@ "pageStart": 641852, "title": "Relationship Between Autophagy and Metabolic Syndrome Characteristics in the Pathogenesis of Atherosclerosis", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -3719,6 +3761,7 @@ "pageStart": 3170, "title": "17beta-Estradiol inhibits iron hormone hepcidin through an estrogen responsive element half-site", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -3770,6 +3813,7 @@ "pageStart": 173, "title": "Meta-analyses of the effect of hormone treatment on cognitive function in postmenopausal women", "meta": { + "yearPublished": "2007", "publicationType": "journal" } }, @@ -3848,6 +3892,7 @@ "pageStart": 2301, "title": "Mdm2 is a target and mediator of IRP2 in cell growth control", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -3962,6 +4007,7 @@ "pageStart": 2333, "title": "CB1 agonism prolongs therapeutic window for hormone replacement in ovariectomized mice", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -4053,6 +4099,7 @@ "pageStart": 13, "title": "Melatonin attenuates smoking-induced atherosclerosis by activating the Nrf2 pathway via NLRP3 inflammasomes in endothelial cells", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -4095,6 +4142,7 @@ "pageStart": 26, "title": "Links between oestrogen receptor activation and proteolysis: relevance to hormone-regulated cancer therapy", "meta": { + "yearPublished": "2014", "publicationType": "journal" } } diff --git a/src/codecs/jats/__file_snapshots__/87253.json b/src/codecs/jats/__file_snapshots__/87253.json index 06d5fed1f..a9eaae95d 100644 --- a/src/codecs/jats/__file_snapshots__/87253.json +++ b/src/codecs/jats/__file_snapshots__/87253.json @@ -312,6 +312,7 @@ "pageStart": 1, "title": "The functional diversity of Aurora kinases: A comprehensive review", "meta": { + "yearPublished": "2018", "label": "1.", "publicationType": "journal" } @@ -408,6 +409,7 @@ "pageStart": 3917, "title": "Nuclear localisation of Aurora-A: its regulation and significance for Aurora-A functions in cancer", "meta": { + "yearPublished": "2021", "label": "2.", "publicationType": "journal" } @@ -458,6 +460,7 @@ "pageStart": 220134, "title": "Regulating the regulator: a survey of mechanisms from transcription to translation controlling expression of mammalian cell cycle kinase Aurora A", "meta": { + "yearPublished": "2022", "label": "3.", "publicationType": "journal" } @@ -536,6 +539,7 @@ "pageStart": 1, "title": "Targeting AURKA in Cancer: molecular mechanisms and opportunities for Cancer therapy", "meta": { + "yearPublished": "2021", "label": "4.", "publicationType": "journal" } @@ -596,6 +600,7 @@ "pageStart": 1, "title": "Protein synthesis control in cancer: selectivity and therapeutic targeting", "meta": { + "yearPublished": "2022", "label": "5.", "publicationType": "journal" } @@ -726,6 +731,7 @@ "pageStart": 1, "title": "The malignant phenotype in breast cancer is driven by eIf4A1-mediated changes in the translational landscape", "meta": { + "yearPublished": "2015", "label": "6.", "publicationType": "journal" } @@ -786,6 +792,7 @@ "pageStart": 887, "title": "Dysregulating IRES-dependent translation contributes to overexpression of oncogenic Aurora A kinase", "meta": { + "yearPublished": "2013", "label": "7.", "publicationType": "journal" } @@ -916,6 +923,7 @@ "pageStart": 1, "title": "Translational upregulation of Aurora-A by hnRNP Q1 contributes to cell proliferation and tumorigenesis in colorectal cancer", "meta": { + "yearPublished": "2017", "label": "8.", "publicationType": "journal" } @@ -967,6 +975,7 @@ "pageStart": 599, "title": "Alternative cleavage and polyadenylation in health and disease", "meta": { + "yearPublished": "2019", "label": "9.", "publicationType": "journal" } @@ -1072,6 +1081,7 @@ "pageStart": 1145, "title": "A comprehensive analysis of 3’ end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation", "meta": { + "yearPublished": "2016", "label": "10.", "publicationType": "journal" } @@ -1186,6 +1196,7 @@ "pageStart": 1173, "title": "A quantitative atlas of polyadenylation in five mammals", "meta": { + "yearPublished": "2012", "label": "11.", "publicationType": "journal" } @@ -1255,6 +1266,7 @@ "pageStart": "D315", "title": "PolyA-DB 3 catalogs cleavage and polyadenylation sites identified by deep sequencing in multiple genomes", "meta": { + "yearPublished": "2018", "label": "12.", "publicationType": "journal" } @@ -1360,6 +1372,7 @@ "pageStart": 9422, "title": "Global changes in processing of mRNA 3′ untranslated regions characterize clinically distinct cancer subtypes", "meta": { + "yearPublished": "2009", "label": "13.", "publicationType": "journal" } @@ -1490,6 +1503,7 @@ "pageStart": 10531, "title": "Dissecting the heterogeneity of the alternative polyadenylation profiles in triple-negative breast cancers", "meta": { + "yearPublished": "2020", "label": "14.", "publicationType": "journal" } @@ -1554,6 +1568,7 @@ }, "title": "Shortening of 3′UTRs correlates with poor prognosis in breast and lung cancer", "meta": { + "yearPublished": "2012", "label": "15.", "publicationType": "journal" } @@ -1684,6 +1699,7 @@ "pageStart": 379, "title": "Comprehensive characterization of alternative polyadenylation in human cancer", "meta": { + "yearPublished": "2018", "label": "16.", "publicationType": "journal" } @@ -1762,6 +1778,7 @@ "pageStart": 1643, "title": "Proliferating cells express mRNAs with shortened 3’ untranslated regions and fewer microRNA target sites", "meta": { + "yearPublished": "2008", "label": "17.", "publicationType": "journal" } @@ -1813,6 +1830,7 @@ "pageStart": 673, "title": "Widespread shortening of 3′UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells", "meta": { + "yearPublished": "2009", "label": "18.", "publicationType": "journal" } @@ -1919,6 +1937,7 @@ "pageStart": 412, "title": "CFIm25 links alternative polyadenylation to glioblastoma tumour suppression", "meta": { + "yearPublished": "2014", "label": "19.", "publicationType": "journal" } @@ -2014,6 +2033,7 @@ "pageStart": 5274, "title": "Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3’-UTR landscape across seven tumour types", "meta": { + "yearPublished": "2014", "label": "20.", "publicationType": "journal" } @@ -2138,6 +2158,7 @@ "pageStart": 1101, "title": "The transcriptional terminator XRN2 and the RNA-binding protein Sam68 link alternative polyadenylation to cell cycle progression in prostate cancer", "meta": { + "yearPublished": "2022", "label": "21.", "publicationType": "journal" } @@ -2225,6 +2246,7 @@ "pageStart": 127, "title": "Widespread intronic polyadenylation inactivates tumour suppressor genes in leukaemia", "meta": { + "yearPublished": "2018", "label": "22.", "publicationType": "journal" } @@ -2355,6 +2377,7 @@ "pageStart": 783, "title": "3′ UTR shortening represses tumor-suppressor genes in trans by disrupting ceRNA crosstalk", "meta": { + "yearPublished": "2018", "label": "23.", "publicationType": "journal" } @@ -2406,6 +2429,7 @@ "pageStart": 592, "title": "MicroRNAs and the cell cycle", "meta": { + "yearPublished": "2011", "label": "24.", "publicationType": "journal" } @@ -2474,6 +2498,7 @@ "pageStart": 608975, "title": "The role of non-coding RNAs in controlling cell cycle related proteins in cancer cells", "meta": { + "yearPublished": "2020", "label": "25.", "publicationType": "journal" } @@ -2543,6 +2568,7 @@ "pageStart": 4306, "title": "MicroRNA-based regulation of Aurora A kinase in breast cancer", "meta": { + "yearPublished": "2020", "label": "26.", "publicationType": "journal" } @@ -2621,6 +2647,7 @@ "pageStart": 395, "title": "MicroRNA-490-3p suppresses hepatocellular carcinoma cell proliferation and migration by targeting the aurora kinase A gene (AURKA)", "meta": { + "yearPublished": "2020", "label": "27.", "publicationType": "journal" } @@ -2699,6 +2726,7 @@ "pageStart": 1, "title": "MiR-26a-5p inhibits cell proliferation and enhances doxorubicin sensitivity in HCC cells via targeting AURKA", "meta": { + "yearPublished": "2019", "label": "28.", "publicationType": "journal" } @@ -2813,6 +2841,7 @@ "pageStart": 20111, "title": "Tanshinones suppress AURKA through up-regulation of miR-32 expression in non-small cell lung cancer", "meta": { + "yearPublished": "2015", "label": "29.", "publicationType": "journal" } @@ -2943,6 +2972,7 @@ "pageStart": 7713, "title": "The let-7 microRNA represses cell proliferation pathways in human cells", "meta": { + "yearPublished": "2007", "label": "30.", "publicationType": "journal" } @@ -2994,6 +3024,7 @@ "pageStart": 77, "title": "Role of let-7 family microRNA in breast cancer", "meta": { + "yearPublished": "2016", "label": "31.", "publicationType": "journal" } @@ -3099,6 +3130,7 @@ "pageStart": 53, "title": "Let-7a-5p inhibits triple-negative breast tumor growth and metastasis through GLUT12-mediated warburg effect", "meta": { + "yearPublished": "2020", "label": "32.", "publicationType": "journal" } @@ -3176,6 +3208,7 @@ "pageStart": 51, "title": "Decreased expression of key tumour suppressor microRNAs is associated with lymph node metastases in triple negative breast cancer", "meta": { + "yearPublished": "2014", "label": "33.", "publicationType": "journal" } @@ -3290,6 +3323,7 @@ "pageStart": 5937, "title": "Novel prognostic and predictive microRNA targets for triple-negative breast cancer", "meta": { + "yearPublished": "2018", "label": "34.", "publicationType": "journal" } @@ -3368,6 +3402,7 @@ "pageStart": 6910, "title": "3’UTR shortening and EGF signaling: Implications for breast cancer", "meta": { + "yearPublished": "2015", "label": "35.", "publicationType": "journal" } @@ -3498,6 +3533,7 @@ "pageStart": 1, "title": "Aurora-A Identifies Early Recurrence and Poor Prognosis and Promises a Potential Therapeutic Target in Triple Negative Breast Cancer", "meta": { + "yearPublished": "2013", "label": "36.", "publicationType": "journal" } @@ -3628,6 +3664,7 @@ "pageStart": 2509, "title": "Aurora-A kinase oncogenic signaling mediates TGF-β-induced triple-negative breast cancer plasticity and chemoresistance", "meta": { + "yearPublished": "2021", "label": "37.", "publicationType": "journal" } @@ -3697,6 +3734,7 @@ "pageStart": 116, "title": "PolyA_DB: A database for mammalian mRNA polyadenylation", "meta": { + "yearPublished": "2005", "label": "38.", "publicationType": "journal" } @@ -3827,6 +3865,7 @@ "pageStart": 374, "title": "TM4: A free, open-source system for microarray data management and analysis", "meta": { + "yearPublished": "2003", "label": "39.", "publicationType": "journal" } @@ -3887,6 +3926,7 @@ "pageStart": 10679, "title": "Estrogen-induced upregulation and 3′-UTR shortening of CDC6", "meta": { + "yearPublished": "2012", "label": "40.", "publicationType": "journal" } @@ -3982,6 +4022,7 @@ "pageStart": 170272, "title": "Constitutive regulation of mitochondrial morphology by Aurora A kinase depends on a predicted cryptic targeting sequence at the N-terminus", "meta": { + "yearPublished": "2018", "label": "41.", "publicationType": "journal" } @@ -4034,6 +4075,7 @@ }, "title": "Advanced methods of microscope control using μManager software", "meta": { + "yearPublished": "2014", "label": "42.", "publicationType": "journal" } @@ -4164,6 +4206,7 @@ "pageStart": 676, "title": "Fiji: An open-source platform for biological-image analysis", "meta": { + "yearPublished": "2012", "label": "43.", "publicationType": "journal" } @@ -4263,6 +4306,7 @@ }, "title": "AURKA destruction is decoupled from its activity at mitotic exit but is essential to suppress interphase activity", "meta": { + "yearPublished": "2020", "label": "44.", "publicationType": "journal" } @@ -4393,6 +4437,7 @@ "pageStart": 611, "title": "The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments", "meta": { + "yearPublished": "2009", "label": "45.", "publicationType": "journal" } @@ -4472,6 +4517,7 @@ "pageStart": 1, "title": "CRISPR-Cas9D10A nickase-based genotypic and phenotypic screening to enhance genome editing", "meta": { + "yearPublished": "2016", "label": "46.", "publicationType": "journal" } @@ -4559,6 +4605,7 @@ "pageStart": 1, "title": "An image J plugin for the high throughput image analysis of in vitro 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@@ -6540,6 +6609,7 @@ "pageStart": 189, "title": "Tumour amplified kinase STK15/BTAK induces centrosome amplification, aneuploidy and transformation", "meta": { + "yearPublished": "1998", "label": "70.", "publicationType": "journal" } @@ -6610,6 +6680,7 @@ "pageStart": 230, "title": "The Aurora-A/TPX2 complex: A novel oncogenic holoenzyme?", "meta": { + "yearPublished": "2010", "label": "71.", "publicationType": "journal" } @@ -6661,6 +6732,7 @@ "pageStart": 1031, "title": "Insights into the non-mitotic functions of Aurora kinase A: more than just cell division", "meta": { + "yearPublished": "2020", "label": "72.", "publicationType": "journal" } @@ -6712,6 +6784,7 @@ "pageStart": 779, "title": "Context-specific regulation and function of mRNA alternative polyadenylation", "meta": { + "yearPublished": "2022", "label": "73.", "publicationType": "journal" } @@ -6817,6 +6890,7 @@ "pageStart": 7231, "title": "Alternative polyadenylation in triple-negative breast tumors allows NRAS and c-JUN to bypass PUMILIO posttranscriptional regulation", "meta": { + "yearPublished": "2016", "label": "74.", "publicationType": "journal" } @@ -6877,6 +6951,7 @@ "pageStart": 1, "title": "Ubiquitin-mediated degradation of Aurora kinases", "meta": { + "yearPublished": "2016", "label": "75.", "publicationType": "journal" } @@ -6937,6 +7012,7 @@ "pageStart": 1108, "title": "Human let-7a miRNA blocks protein production on actively translating polyribosomes", "meta": { + "yearPublished": "2006", "label": "76.", "publicationType": "journal" } @@ -7007,6 +7083,7 @@ "pageStart": 1, "title": "Cotranslational microRNA mediated messenger RNA destabilization", "meta": { + "yearPublished": "2016", "label": "77.", "publicationType": "journal" } @@ -7130,6 +7207,7 @@ "pageStart": 1, "title": "Translation is required for miRNA-dependent decay of endogenous transcripts", "meta": { + "yearPublished": "2021", "label": "78.", "publicationType": "journal" } @@ -7244,6 +7322,7 @@ "pageStart": 1, "title": "Fluorescence activated cell sorting followed by small RNA sequencing reveals stable microRNA expression during cell cycle progression", "meta": { + "yearPublished": "2016", "label": "79.", "publicationType": "journal" } diff --git a/src/codecs/jats/__file_snapshots__/8758d58a-6c3d-1014-87a3-bbc202f7d832.json b/src/codecs/jats/__file_snapshots__/8758d58a-6c3d-1014-87a3-bbc202f7d832.json index 14d4243ee..f46241019 100644 --- a/src/codecs/jats/__file_snapshots__/8758d58a-6c3d-1014-87a3-bbc202f7d832.json +++ b/src/codecs/jats/__file_snapshots__/8758d58a-6c3d-1014-87a3-bbc202f7d832.json @@ -630,6 +630,7 @@ }, "title": "Genesis of the αβ T-cell receptor", "meta": { + "yearPublished": "2018", "label": "1.", "publicationType": "journal" } @@ -673,6 +674,7 @@ "pageStart": 266, "title": "Janeway’s immunobiology. Garland Science.(2016)", "meta": { + "yearPublished": "2012", "label": "2.", "publicationType": "journal" } @@ -736,6 +738,7 @@ "pageStart": 16161, "title": "Statistical inference of the generation probability of T-cell receptors from sequence repertoires", "meta": { + "yearPublished": "2012", "label": "3.", "publicationType": "journal" } @@ -780,6 +783,7 @@ "pageStart": 547, "title": "Using T Cell Receptor Repertoires to Understand the Principles of Adaptive Immune Recognition", "meta": { + "yearPublished": "2019", "label": "4.", "publicationType": "journal" } @@ -843,6 +847,7 @@ "pageStart": 377, "title": "Positive and negative selection of the T cell repertoire: what thymocytes see (and don’t see)", "meta": { + "yearPublished": "2014", "label": "5.", "publicationType": "journal" } @@ -905,6 +910,7 @@ "pageStart": "E2905", "title": "Asymmetric thymocyte death underlies the CD4:CD8 T-cell ratio in the adaptive immune system", "meta": { + "yearPublished": "2013", "label": "6.", "publicationType": "journal" } @@ -969,6 +975,7 @@ "pageStart": 181, "title": "Revisiting Thymic Positive Selection and the Mature T Cell Repertoire for Antigen", "meta": { + "yearPublished": "2014", "label": "7.", "publicationType": "journal" } @@ -1088,6 +1095,7 @@ "pageStart": 13139, "title": "Diversity and clonal selection in the human T-cell repertoire", "meta": { + "yearPublished": "2014", "label": "8.", "publicationType": "journal" } @@ -1117,6 +1125,7 @@ }, "title": "T-cell antigen receptor genes and T-cell recognition", "meta": { + "yearPublished": "1988", "label": "9.", "publicationType": "other" } @@ -1182,6 +1191,7 @@ "pageStart": 275, "title": "On the Composition of the Preimmune Repertoire of T Cells Specific for Peptide–Major Histocompatibility Complex Ligands", "meta": { + "yearPublished": "2010", "label": "10.", "publicationType": "journal" } @@ -1309,6 +1319,7 @@ "pageStart": 274, "title": "Diversity, functionality, and stability of the T cell repertoire derived in vivo from a single human T cell precursor", "meta": { + "yearPublished": "2000", "label": "11.", "publicationType": "journal" } @@ -1424,6 +1435,7 @@ "pageStart": 540, "title": "BCG vaccination scar associated with better childhood survival in Guinea-Bissau", "meta": { + "yearPublished": "2005", "label": "12.", "publicationType": "journal" } @@ -1514,6 +1526,7 @@ "pageStart": 1206, "title": "Unique influenza A cross-reactive memory CD8 T-cell receptor repertoire has a potential to protect against EBV seroconversion", "meta": { + "yearPublished": "2017", "label": "13.", "publicationType": "journal" } @@ -1559,6 +1572,7 @@ "pageStart": 417, "title": "No one is naive: the significance of heterologous T-cell immunity", "meta": { + "yearPublished": "2002", "label": "14.", "publicationType": "journal" } @@ -1613,6 +1627,7 @@ "pageStart": 99, "title": "Heterogeneous Memory T Cells in Antiviral Immunity and Immunopathology", "meta": { + "yearPublished": "2008", "label": "15.", "publicationType": "journal" } @@ -1687,6 +1702,7 @@ "pageStart": 373, "title": "Virus-Specific CD4+ Memory-Phenotype T Cells Are Abundant in Unexposed Adults", "meta": { + "yearPublished": "2013", "label": "16.", "publicationType": "journal" } @@ -1828,6 +1844,7 @@ "pageStart": 281, "title": "Cytomegalovirus infection enhances the immune response to influenza", "meta": { + "yearPublished": "2015", "label": "17.", "publicationType": "journal" } @@ -2094,6 +2111,7 @@ "pageStart": 1825, "title": "Non-terminally exhausted tumor-resident memory HBV-specific T cell responses correlate with relapse-free survival in hepatocellular carcinoma", "meta": { + "yearPublished": "2021", "label": "18.", "publicationType": "journal" } @@ -2176,6 +2194,7 @@ "pageStart": 169, "title": "T Cell Antigen Receptor Recognition of Antigen-Presenting Molecules", "meta": { + "yearPublished": "2015", "label": "19.", "publicationType": "journal" } @@ -2327,6 +2346,7 @@ "pageStart": 89, "title": "Quantifiable predictive features define epitope-specific T cell receptor repertoires", "meta": { + "yearPublished": "2017", "label": "20.", "publicationType": "journal" } @@ -2429,6 +2449,7 @@ }, "title": "Multiplex Identification of Antigen-Specific T Cell Receptors Using a Combination of Immune Assays and Immune Receptor Sequencing", "meta": { + "yearPublished": "2015", "label": "21.", "publicationType": "journal" } @@ -2580,6 +2601,7 @@ }, "title": "T cell receptor repertoires of mice and humans are clustered in similarity networks around conserved public CDR3 sequences", "meta": { + "yearPublished": "2017", "label": "22.", "publicationType": "journal" } @@ -2687,6 +2709,7 @@ "pageStart": 569, "title": "Sequence and Structural Analyses Reveal Distinct and Highly Diverse Human CD8 + TCR Repertoires to Immunodominant Viral Antigens", "meta": { + "yearPublished": "2017", "label": "23.", "publicationType": "journal" } @@ -2873,6 +2896,7 @@ "pageStart": 94, "title": "Identifying specificity groups in the T cell receptor repertoire", "meta": { + "yearPublished": "2017", "label": "24.", "publicationType": "journal" } @@ -2991,6 +3015,7 @@ "pageStart": 332, "title": "Diversification of the antigen-specific T cell receptor repertoire after varicella zoster vaccination", "meta": { + "yearPublished": "2016", "label": "25.", "publicationType": "journal" } @@ -3072,6 +3097,7 @@ "pageStart": 1461, "title": "On the viability of unsupervised T-cell receptor sequence clustering for epitope preference", "meta": { + "yearPublished": "2019", "label": "26.", "publicationType": "journal" } @@ -3142,6 +3168,7 @@ "pageStart": 2924, "title": "McPAS-TCR: a manually curated catalogue of pathology-associated T cell receptor sequences", "meta": { + "yearPublished": "2017", "label": "27.", "publicationType": "journal" } @@ -3438,6 +3465,7 @@ "pageStart": "D419", "title": "VDJdb: a curated database of T-cell receptor sequences with known antigen specificity", "meta": { + "yearPublished": "2018", "label": "28.", "publicationType": "journal" } @@ -3622,6 +3650,7 @@ }, "title": "Comparison of peptidemajor histocompatibility complex tetramers and dextramers for the identification of antigenspecific T cells", "meta": { + "yearPublished": "2014", "label": "29.", "publicationType": "journal" } @@ -3750,6 +3779,7 @@ "pageStart": 17, "title": "Multiplex T Cell Stimulation Assay Utilizing a T Cell Activation Reporter-Based Detection System", "meta": { + "yearPublished": "2020", "label": "30.", "publicationType": "journal" } @@ -4040,6 +4070,7 @@ }, "title": "Islet-reactive CD8 + T cell frequencies in the pancreas, but not in blood, distinguish type 1 diabetic patients from healthy donors", "meta": { + "yearPublished": "2018", "label": "31.", "publicationType": "journal" } @@ -4164,6 +4195,7 @@ "pageStart": 87, "title": "Structural interplay between germline interactions and adaptive recognition determines the bandwidth of TCR-peptide-MHC cross-reactivity", "meta": { + "yearPublished": "2016", "label": "32.", "publicationType": "journal" } @@ -4285,6 +4317,7 @@ "pageStart": 1073, "title": "Deconstructing the Peptide-MHC Specificity of T Cell Recognition", "meta": { + "yearPublished": "2014", "label": "33.", "publicationType": "journal" } @@ -4319,6 +4352,7 @@ "pageStart": 395, "title": "A very high level of crossreactivity is an essential feature of the T-cell receptor", "meta": { + "yearPublished": "1998", "label": "34.", "publicationType": "journal" } @@ -4459,6 +4493,7 @@ "pageStart": 1168, "title": "A Single Autoimmune T Cell Receptor Recognizes More Than a Million Different Peptides", "meta": { + "yearPublished": "2012", "label": "35.", "publicationType": "journal" } @@ -4610,6 +4645,7 @@ "pageStart": 95, "title": "T Cell Receptor Cross-Reactivity between Similar Foreign and Self Peptides Influences Naive Cell Population Size and Autoimmunity", "meta": { + "yearPublished": "2015", "label": "36.", "publicationType": "journal" } @@ -4655,6 +4691,7 @@ "pageStart": 695, "title": "Molecular mimicry in T cell-mediated autoimmunity: Viral peptides activate human T cell clones specific for myelin basic protein", "meta": { + "yearPublished": "1995", "label": "37.", "publicationType": "journal" } @@ -4716,6 +4753,7 @@ "pageStart": 643, "title": "Mucosal-associated invariant T cells and disease", "meta": { + "yearPublished": "2019", "label": "38.", "publicationType": "journal" } @@ -4769,6 +4807,7 @@ "pageStart": 479, "title": "The Immunology of CD1- and MR1-Restricted T Cells", "meta": { + "yearPublished": "2016", "label": "39.", "publicationType": "journal" } @@ -4804,6 +4843,7 @@ "pageStart": 229, "title": "Neonatal T Cells: A Reinterpretation", "meta": { + "yearPublished": "2020", "label": "40.", "publicationType": "journal" } @@ -4859,6 +4899,7 @@ "pageStart": 499, "title": "Building a T cell compartment: how immune cell development shapes function", "meta": { + "yearPublished": "2020", "label": "41.", "publicationType": "journal" } @@ -5266,6 +5307,7 @@ "pageStart": 586, "title": "Global analysis of shared T cell specificities in human non-small cell lung cancer enables HLA inference and antigen discovery", "meta": { + "yearPublished": "2021", "label": "42.", "publicationType": "journal" } @@ -5521,6 +5563,7 @@ "pageStart": 1264, "title": "HLA-DR15 Molecules Jointly Shape an Autoreactive T Cell Repertoire in Multiple Sclerosis", "meta": { + "yearPublished": "2020", "label": "43.", "publicationType": "journal" } @@ -5625,6 +5668,7 @@ "pageStart": 1016, "title": "T-Scan: A Genome-wide Method for the Systematic Discovery of T Cell Epitopes", "meta": { + "yearPublished": "2019", "label": "44.", "publicationType": "journal" } @@ -5698,6 +5742,7 @@ "pageStart": 1114, "title": "The burgeoning family of unconventional T cells", "meta": { + "yearPublished": "2015", "label": "45.", "publicationType": "journal" } @@ -5780,6 +5825,7 @@ "pageStart": 13, "title": "Natural Antibodies Bridge Innate and Adaptive Immunity", "meta": { + "yearPublished": "2015", "label": "47.", "publicationType": "journal" } @@ -5860,6 +5906,7 @@ "pageStart": 106, "title": "The survival benefit of measles immunization may not be explained entirely by the prevention of measles disease: a community study from rural Bangladesh", "meta": { + "yearPublished": "2003", "label": "48.", "publicationType": "journal" } @@ -5979,6 +6026,7 @@ "pageStart": "c6495", "title": "Non-specific effects of standard measles vaccine at 4.5 and 9 months of age on childhood mortality: randomised controlled trial", "meta": { + "yearPublished": "2010", "label": "49.", "publicationType": "journal" } @@ -6024,6 +6072,7 @@ "pageStart": 417, "title": "No one is naive: the significance of heterologous T-cell immunity", "meta": { + "yearPublished": "2002", "label": "50.", "publicationType": "journal" } @@ -6059,6 +6108,7 @@ "pageStart": 669, "title": "Why must T cells be cross-reactive?", "meta": { + "yearPublished": "2012", "label": "51.", "publicationType": "journal" } @@ -6111,6 +6161,7 @@ "pageStart": 487, "title": "Human Influenza Virus Infections", "meta": { + "yearPublished": "2016", "label": "52.", "publicationType": "journal" } @@ -6154,6 +6205,7 @@ "pageStart": "S71", "title": "Adaptive immunity in HBV infection", "meta": { + "yearPublished": "2016", "label": "53.", "publicationType": "journal" } @@ -6231,6 +6283,7 @@ }, "title": "The trinity of COVID-19: immunity, inflammation and intervention", "meta": { + "yearPublished": "2020", "label": "54.", "publicationType": "journal" } @@ -6425,6 +6478,7 @@ }, "title": "Benchmarking of T cell receptor repertoire profiling methods reveals large systematic biases", "meta": { + "yearPublished": "2020", "label": "55.", "publicationType": "journal" } @@ -6517,6 +6571,7 @@ "pageStart": 380, "title": "MiXCR: software for comprehensive adaptive immunity profiling", "meta": { + "yearPublished": "2015", "label": "56.", "publicationType": "journal" } @@ -6616,6 +6671,7 @@ }, "title": "ggplot2: elegant 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a/src/codecs/jats/__file_snapshots__/c2c3813f-6c98-1014-8ba7-9ee2cd5f4386.json +++ b/src/codecs/jats/__file_snapshots__/c2c3813f-6c98-1014-8ba7-9ee2cd5f4386.json @@ -721,6 +721,7 @@ "pageStart": 485, "title": "Development of ProTx-II Analogues as Highly Selective Peptide Blockers of Nav1.7 for the Treatment of Pain", "meta": { + "yearPublished": "2022", "publicationType": "journal" } }, @@ -794,6 +795,7 @@ "pageStart": 1, "title": "The hitchhiker’s guide to the voltage-gated sodium channel galaxy", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -870,6 +872,7 @@ "pageStart": 2042, "title": "Protein Structure Prediction and Design in a Biologically Realistic Implicit Membrane", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -915,6 +918,7 @@ "pageStart": 1193, "title": "Do the potential benefits outweigh the risks? An update on the use of ziconotide in clinical practice", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -989,6 +993,7 @@ "pageStart": 267, "title": "Cellular and molecular mechanisms of pain", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -1090,6 +1095,7 @@ "pageStart": 1250, "title": "Antinociceptive properties of an isoform-selective inhibitor of Nav1.7 derived from saxitoxin in mouse models of pain", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -1194,6 +1200,7 @@ "pageStart": 4748, "title": "Protocols for Molecular Modeling with Rosetta3 and RosettaScripts", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -1279,6 +1286,7 @@ "pageStart": 1079, "title": "The Role of Voltage-Gated Sodium Channels in Pain Signaling", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -1370,6 +1378,7 @@ "pageStart": 21, "title": "Lacosamide: a review of preclinical properties", "meta": { + "yearPublished": "2007", "publicationType": "journal" } }, @@ -1435,6 +1444,7 @@ "pageStart": 663, "title": "Sodium channel blockers for the treatment of neuropathic pain", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -1505,6 +1515,7 @@ "pageStart": 82, "title": "Expression of Nav1.7 in DRG neurons extends from peripheral terminals in the skin to central preterminal branches and terminals in the dorsal horn", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -1589,6 +1600,7 @@ "pageStart": 644, "title": "Multiple sodium channel isoforms and mitogen-activated protein kinases are present in painful human neuromas", "meta": { + "yearPublished": "2008", "publicationType": "journal" } }, @@ -1644,6 +1656,7 @@ "pageStart": 175, "title": "Targeting voltage sensors in sodium channels with spider toxins", "meta": { + "yearPublished": "2010", "publicationType": "journal" } }, @@ -1712,6 +1725,7 @@ "pageStart": 100082, "title": "Small molecule targeting NaV1.7 via inhibition of the CRMP2-Ubc9 interaction reduces and prevents pain chronification in a mouse model of oxaliplatin-induced neuropathic pain", "meta": { + "yearPublished": "2022", "publicationType": "journal" } }, @@ -1815,6 +1829,7 @@ "pageStart": 291, "title": "Identification and Characterization of ProTx-III [mu-TRTX-Tp1a], a New Voltage-Gated Sodium Channel Inhibitor from Venom of the Tarantula Thrixopelma pruriens", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -1874,6 +1889,7 @@ "title": "International Union of Pharmacology. XLVII. Nomenclature and structure-function relationships of voltage-gated sodium channels", "url": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16382098", "meta": { + "yearPublished": "2005", "publicationType": "journal" } }, @@ -1967,6 +1983,7 @@ "pageStart": 4, "title": "Expression and Role of Voltage-Gated Sodium Channels in Human Dorsal Root Ganglion Neurons with Special Focus on Nav1.7, Species Differences, and Regulation by Paclitaxel", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -2060,6 +2077,7 @@ }, "title": "Structural basis of alpha-scorpion toxin action on Nav channels", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -2162,6 +2180,7 @@ "pageStart": 894, "title": "An SCN9A channelopathy causes congenital inability to experience pain", "meta": { + "yearPublished": "2006", "publicationType": "journal" } }, @@ -2228,6 +2247,7 @@ "pageStart": 8232, "title": "Electrophysiological properties of mutant Nav1.7 sodium channels in a painful inherited neuropathy", "meta": { + "yearPublished": "2004", "publicationType": "journal" } }, @@ -2332,6 +2352,7 @@ "pageStart": 230, "title": "Effectiveness and Safety of Intrathecal Ziconotide: Interim Analysis of the Patient Registry of Intrathecal Ziconotide Management (PRIZM)", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -2408,6 +2429,7 @@ "pageStart": 555, "title": "From genes to pain: Na v 1.7 and human pain disorders", "meta": { + "yearPublished": "2007", "publicationType": "journal" } }, @@ -2480,6 +2502,7 @@ "pageStart": 325, "title": "Sodium channels in normal and pathological pain", "meta": { + "yearPublished": "2010", "publicationType": "journal" } }, @@ -2555,6 +2578,7 @@ "pageStart": 49, "title": "The Na(V)1.7 sodium channel: from molecule to man", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -2601,6 +2625,7 @@ "pageStart": 277, "title": "Advances in oral peptide therapeutics", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -2676,6 +2701,7 @@ "pageStart": 1581, "title": "Cutaneous sensory neurons expressing the Mrgprd receptor sense extracellular ATP and are putative nociceptors", "meta": { + "yearPublished": "2008", "publicationType": "journal" } }, @@ -2767,6 +2793,7 @@ "pageStart": "E8443", "title": "Hierarchical CRMP2 posttranslational modifications control NaV1.7 function", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -2861,6 +2888,7 @@ "pageStart": 862, "title": "A sodium channel gene SCN9A polymorphism that increases nociceptor excitability", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -2964,6 +2992,7 @@ "pageStart": 767, "title": "SCN9A mutations in paroxysmal extreme pain disorder: allelic variants underlie distinct channel defects and phenotypes", "meta": { + "yearPublished": "2006", "publicationType": "journal" } }, @@ -3005,6 +3034,7 @@ }, "title": "Protoxin-II variants and methods of use Patent No. US20150099705", "meta": { + "yearPublished": "2015", "publicationType": "patent" } }, @@ -3101,6 +3131,7 @@ "pageStart": 39662, "title": "Insensitivity to pain induced by a potent selective closed-state Nav1.7 inhibitor", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -3205,6 +3236,7 @@ }, "title": "Global Nav1.7 knockout mice recapitulate the phenotype of human congenital indifference to pain", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -3308,6 +3340,7 @@ "pageStart": 80, "title": "Treatment of Na(v)1.7-mediated pain in inherited erythromelalgia using a novel sodium channel blocker", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -3371,6 +3404,7 @@ "pageStart": 11, "title": "Oxaliplatin", "meta": { + "yearPublished": "2004", "publicationType": "journal" } }, @@ -3452,6 +3486,7 @@ "pageStart": 741, "title": "Distinct repriming and closed-state inactivation kinetics of Nav1.6 and Nav1.7 sodium channels in mouse spinal sensory neurons", "meta": { + "yearPublished": "2003", "publicationType": "journal" } }, @@ -3508,6 +3543,7 @@ "pageStart": 2135, "title": "CHARMM36 all-atom additive protein force field: validation based on comparison to NMR data", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -3571,6 +3607,7 @@ "pageStart": 531, "title": "Intravenous lidocaine for neuropathic pain: a retrospective analysis of tolerability and efficacy", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -3674,6 +3711,7 @@ "pageStart": 1245, "title": "Tertiary Care Clinical Experience with Intravenous Lidocaine Infusions for the Treatment of Chronic Pain", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -3768,6 +3806,7 @@ "pageStart": 87, "title": "High-performance scalable molecular dynamics simulations of a polarizable force field based on classical Drude oscillators in NAMD", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -3841,6 +3880,7 @@ "pageStart": 1859, "title": "CHARMM-GUI: a web-based graphical user interface for CHARMM", "meta": { + "yearPublished": "2008", "publicationType": "journal" } }, @@ -3917,6 +3957,7 @@ "pageStart": 399, "title": "Ion channels as drug targets: the next GPCRs", "meta": { + "yearPublished": "2008", "publicationType": "journal" } }, @@ -3978,6 +4019,7 @@ }, "title": "Lidocaine Infusion: A Promising Therapeutic Approach for Chronic Pain", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -4050,6 +4092,7 @@ "pageStart": 1084, "title": "Structure and functional expression of a new member of the tetrodotoxin-sensitive voltage-activated sodium channel family from human neuroendocrine cells", "meta": { + "yearPublished": "1995", "publicationType": "journal" } }, @@ -4135,6 +4178,7 @@ "title": "Design of a novel globular protein fold with atomic-level accuracy", "url": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14631033", "meta": { + "yearPublished": "2003", "publicationType": "journal" } }, @@ -4238,6 +4282,7 @@ "pageStart": 665, "title": "Macromolecular modeling and design in Rosetta: recent methods and frameworks", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -4342,6 +4387,7 @@ "pageStart": 1124, "title": "DRG Voltage-Gated Sodium Channel 1.7 Is Upregulated in Paclitaxel-Induced Neuropathy in Rats and in Humans with Neuropathic Pain", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -4393,6 +4439,7 @@ "pageStart": "S93", "title": "The roles of sodium channels in nociception: implications for mechanisms of neuropathic pain", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -4496,6 +4543,7 @@ "pageStart": 436, "title": "Perturbing the energy landscape for improved packing during computational protein design", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -4542,6 +4590,7 @@ "pageStart": 283, "title": "Animal models of pain: progress and challenges", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -4648,6 +4697,7 @@ }, "title": "Pharmacological characterization of potent and selective NaV1.7 inhibitors engineered from Chilobrachys jingzhao tarantula venom peptide JzTx-V", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -4687,6 +4737,7 @@ "title": "Systemic toxicity and cardiotoxicity from local anesthetics: incidence and preventive measures", "url": "http://www.ncbi.nlm.nih.gov/pubmed/12430104", "meta": { + "yearPublished": "2002", "publicationType": "journal" } }, @@ -4788,6 +4839,7 @@ "pageStart": 2299, "title": "Engineering potent and selective analogues of GpTx-1, a tarantula venom peptide antagonist of the Na(V)1.7 sodium channel", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -4834,6 +4886,7 @@ "pageStart": 769, "title": "Estimates of pain prevalence and severity in adults: United States, 2012", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -4939,6 +4992,7 @@ "pageStart": 12706, "title": "Nociceptor-specific gene deletion reveals a major role for Nav1.7 (PN1) in acute and inflammatory pain", "meta": { + "yearPublished": "2004", "publicationType": "journal" } }, @@ -4995,6 +5049,7 @@ "pageStart": 179, "title": "Selective Targeting of Nav1.7 with Engineered Spider Venom-Based Peptides", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -5084,6 +5139,7 @@ }, "title": "Molecular basis for pore blockade of human Na(+) channel Nav1.2 by the mu-conotoxin KIIIA", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -5189,6 +5245,7 @@ "pageStart": 6623, "title": "Studies examining the relationship between the chemical structure of protoxin II and its activity on voltage gated sodium channels", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -5240,6 +5297,7 @@ "pageStart": 271, "title": "Selective Ligands and Drug Discovery Targeting the Voltage-Gated Sodium Channel Nav1.7", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -5313,6 +5371,7 @@ "pageStart": 353, "title": "The crystal structure of a voltage-gated sodium channel", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -5381,6 +5440,7 @@ "title": "Molecular determinants of state-dependent block of Na+ channels by local anesthetics", "url": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8085162", "meta": { + "yearPublished": "1994", "publicationType": "journal" } }, @@ -5484,6 +5544,7 @@ "pageStart": 5148, "title": "Pain perception is altered by a nucleotide polymorphism in SCN9A", "meta": { + "yearPublished": "2010", "publicationType": "journal" } }, @@ -5546,6 +5607,7 @@ "pageStart": 1, "title": "Multiple sodium channels and their roles in electrogenesis within dorsal root ganglion neurons", "meta": { + "yearPublished": "2007", "publicationType": "journal" } }, @@ -5612,6 +5674,7 @@ "pageStart": 327, "title": "Numerical-Integration of Cartesian Equations of Motion of a System with Constraints - Molecular- Dynamics of N-Alkanes", "meta": { + "yearPublished": "1977", "publicationType": "journal" } }, @@ -5715,6 +5778,7 @@ "pageStart": 1476, "title": "ProTx-II, a selective inhibitor of NaV1.7 sodium channels, blocks action potential propagation in nociceptors", "meta": { + "yearPublished": "2008", "publicationType": "journal" } }, @@ -5796,6 +5860,7 @@ "pageStart": 931, "title": "Managing Chronic Pain in Primary Care: It Really Does Take a Village", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -5877,6 +5942,7 @@ "pageStart": 1303, "title": "Structures of human Nav1.7 channel in complex with auxiliary subunits and animal toxins", "meta": { + "yearPublished": "2019a", "publicationType": "journal" } }, @@ -5948,6 +6014,7 @@ }, "title": "Structures of human Nav1.7 channel in complex with auxiliary subunits and animal toxins", "meta": { + "yearPublished": "2019b", "publicationType": "journal" } }, @@ -6036,6 +6103,7 @@ }, "title": "Structure of a eukaryotic voltage-gated sodium channel at near-atomic resolution", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -6129,6 +6197,7 @@ "pageStart": 10819, "title": "Sodium channel Na(v)1.7 is essential for lowering heat pain threshold after burn injury", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -6194,6 +6263,7 @@ "pageStart": 2410, "title": "Quantitative differences in neuronal subpopulations between mouse and human dorsal root ganglia demonstrated with RNAscope in situ hybridization", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -6269,6 +6339,7 @@ "pageStart": 12687, "title": "Molecular interactions of the gating modifier toxin ProTx-II with NaV 1.5: implied existence of a novel toxin binding site coupled to activation", "meta": { + "yearPublished": "2007", "publicationType": "journal" } }, @@ -6371,6 +6442,7 @@ "pageStart": 1003, "title": "A classification of chronic pain for ICD-11", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -6481,6 +6553,7 @@ "pageStart": 655, "title": "The in vitro mechanisms and in vivo efficacy of intravenous lidocaine on the neuroinflammatory response in acute and chronic pain", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -6567,6 +6640,7 @@ "pageStart": 194, "title": "Side effects of antiepileptics--a review", "meta": { + "yearPublished": "2004", "publicationType": "journal" } }, @@ -6623,6 +6697,7 @@ "pageStart": 153, "title": "Regulating excitability of peripheral afferents: emerging ion channel targets", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -6687,6 +6762,7 @@ }, "title": "Lamotrigine for acute and chronic pain", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -6761,6 +6837,7 @@ }, "title": "Carbamazepine for chronic neuropathic pain and fibromyalgia in adults", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -6862,6 +6939,7 @@ "pageStart": 9500, "title": "Discovery of Tarantula Venom-Derived NaV1.7-Inhibitory JzTx-V Peptide 5-Br-Trp24 Analogue AM-6120 with Systemic Block of Histamine-Induced Pruritis", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -6934,6 +7012,7 @@ }, "title": "Antibodies and venom peptides: new modalities for ion channels", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -7018,6 +7097,7 @@ "pageStart": 1124, "title": "The tarantula toxins ProTx-II and huwentoxin-IV differentially interact with human Nav1.7 voltage sensors to inhibit channel activation and inactivation", "meta": { + "yearPublished": "2010", "publicationType": "journal" } }, @@ -7108,6 +7188,7 @@ }, "title": "Structural Basis of Nav1.7 Inhibition by a Gating-Modifier Spider Toxin", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -7204,6 +7285,7 @@ "pageStart": 1186, "title": "Structural modelling and mutant cycle analysis predict pharmacoresponsiveness of a Na(V)1.7 mutant channel", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -7296,6 +7378,7 @@ "title": "Mutations in SCN9A, encoding a sodium channel alpha subunit, in patients with primary erythermalgia", "url": "http://www.ncbi.nlm.nih.gov/pubmed/14985375", "meta": { + "yearPublished": "2004", "publicationType": "journal" } }, @@ -7382,6 +7465,7 @@ "title": "Molecular determinants of voltage-dependent gating and binding of pore-blocking drugs in transmembrane segment IIIS6 of the Na(+) channel alpha subunit", "url": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11024055", "meta": { + "yearPublished": "2001", "publicationType": "journal" } }, @@ -7467,6 +7551,7 @@ "title": "Role of amino acid residues in transmembrane segments IS6 and IIS6 of the Na+ channel alpha subunit in voltage-dependent gating and drug block", "url": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12130650", "meta": { + "yearPublished": "2002", "publicationType": "journal" } }, @@ -7557,6 +7642,7 @@ "pageStart": 388, "title": "Isolation and characterization of Jingzhaotoxin-V, a novel neurotoxin from the venom of the spider Chilobrachys jingzhao", "meta": { + "yearPublished": "2007", "publicationType": "journal" } }, @@ -7659,6 +7745,7 @@ "pageStart": 1597, "title": "Co-expression of Na(V)beta subunits alters the kinetics of inhibition of voltage-gated sodium channels by pore-blocking mu-conotoxins", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -7752,6 +7839,7 @@ "pageStart": 598, "title": "Deep Sequencing of Somatosensory Neurons Reveals Molecular Determinants of Intrinsic Physiological Properties", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -7818,6 +7906,7 @@ "pageStart": 17, "title": "Topographically distinct epidermal nociceptive circuits revealed by axonal tracers targeted to Mrgprd", "meta": { + "yearPublished": "2005", "publicationType": "journal" } } diff --git a/src/codecs/jats/__file_snapshots__/ca7917ff-6cb0-1014-9b19-d05ef1e56b05.json b/src/codecs/jats/__file_snapshots__/ca7917ff-6cb0-1014-9b19-d05ef1e56b05.json index af9bf1920..698ad6ffd 100644 --- a/src/codecs/jats/__file_snapshots__/ca7917ff-6cb0-1014-9b19-d05ef1e56b05.json +++ b/src/codecs/jats/__file_snapshots__/ca7917ff-6cb0-1014-9b19-d05ef1e56b05.json @@ -336,6 +336,7 @@ }, "title": "Three Dopamine Pathways Induce Aversive Odor Memories with Different Stability", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -389,6 +390,7 @@ }, "title": "Dopaminergic neurons write and update memories with cell-type-specific rules", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -613,6 +615,7 @@ }, "title": "Mushroom body output neurons encode valence and guide memory-based action selection in Drosophila", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -672,6 +675,7 @@ "pageStart": 535, "title": "Conditioned reversal of reactions to normally avoided tastes", "meta": { + "yearPublished": "1990", "publicationType": "journal" } }, @@ -722,6 +726,7 @@ "pageStart": 746, "title": "Remembering Nutrient Quality of Sugar in Drosophila", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -772,6 +777,7 @@ "pageStart": 1087, "title": "Recent advances in the genetic basis of taste detection in Drosophila", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -840,6 +846,7 @@ "pageStart": 1978, "title": "Presynaptic Gain Control Drives Sweet and Bitter Taste Integration in Drosophila", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -935,6 +942,7 @@ "pageStart": 405, "title": "Writing Memories with Light-Addressable Reinforcement Circuitry", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -994,6 +1002,7 @@ "pageStart": 1742, "title": "Coordinated and Compartmentalized Neuromodulation Shapes Sensory Processing in Drosophila", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -1062,6 +1071,7 @@ "pageStart": 407, "title": "Parametric and genetic analysis of Drosophila appetitive long-term memory and sugar motivation", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -1124,6 +1134,7 @@ }, "title": "Internal states drive nutrient homeostasis by modulating exploration-exploitation trade-off", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -1191,6 +1202,7 @@ }, "title": "Tripartite Mushroom Body Architecture Revealed by Antigenic Markers", "meta": { + "yearPublished": "1998", "publicationType": "journal" } }, @@ -1259,6 +1271,7 @@ "pageStart": 503, "title": "Two Gr Genes Underlie Sugar Reception in Drosophila", "meta": { + "yearPublished": "2007", "publicationType": "journal" } }, @@ -1345,6 +1358,7 @@ "pageStart": 109620, "title": "Glial glucose fuels the neuronal pentose phosphate pathway for long-term memory", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -1422,6 +1436,7 @@ "pageStart": 1776, "title": "Ir56b is an atypical ionotropic receptor that underlies appetitive salt response in Drosophila", "meta": { + "yearPublished": "2022", "publicationType": "journal" } }, @@ -1489,6 +1504,7 @@ "pageStart": 112976, "title": "Socially conditioned flavor preferences with fluids: Transfer with solid foods, palatability, and testing constraints", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -1539,6 +1555,7 @@ "pageStart": 153, "title": "Can Orally Consumed Calories Condition Preferences for Relatively Unacceptable Tastes?", "meta": { + "yearPublished": "2000", "publicationType": "journal" } }, @@ -1589,6 +1606,7 @@ "pageStart": 751, "title": "Drosophila Evaluates and Learns the Nutritional Value of Sugars", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -1648,6 +1666,7 @@ "pageStart": 516, "title": "PKA Dynamics in a Drosophila Learning Center: Coincidence Detection by Rutabaga Adenylyl Cyclase and Spatial Regulation by Dunce Phosphodiesterase", "meta": { + "yearPublished": "2010", "publicationType": "journal" } }, @@ -1737,6 +1756,7 @@ }, "title": "Reward signal in a recurrent circuit drives appetitive long-term memory formation", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -1851,6 +1871,7 @@ "pageStart": 583, "title": "Visualizing Neuromodulation In Vivo: TANGO-Mapping of Dopamine Signaling Reveals Appetite Control of Sugar Sensing", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -1910,6 +1931,7 @@ "pageStart": 806, "title": "Independent, Reciprocal Neuromodulatory Control of Sweet and Bitter Taste Sensitivity during Starvation in Drosophila", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -2017,6 +2039,7 @@ }, "title": "A complex peripheral code for salt taste in Drosophila", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -2067,6 +2090,7 @@ "pageStart": 173, "title": "Optogenetic induction of aversive taste memory", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -2129,6 +2153,7 @@ }, "title": "Long-range projection neurons in the taste circuit of Drosophila", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -2179,6 +2204,7 @@ "pageStart": 5950, "title": "Gustatory Learning and Processing in the Drosophila Mushroom Bodies", "meta": { + "yearPublished": "2015a", "publicationType": "journal" } }, @@ -2229,6 +2255,7 @@ "pageStart": 5950, "title": "Gustatory Learning and Processing in the Drosophila Mushroom Bodies", "meta": { + "yearPublished": "2015b", "publicationType": "journal" } }, @@ -2315,6 +2342,7 @@ "pageStart": 416, "title": "A Neural Circuit Mechanism Integrating Motivational State with Memory Expression in Drosophila", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -2401,6 +2429,7 @@ "pageStart": 2854, "title": "Starvation-Induced Depotentiation of Bitter Taste in Drosophila", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -2523,6 +2552,7 @@ "pageStart": 512, "title": "A subset of dopamine neurons signals reward for odour memory in Drosophila", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -2591,6 +2621,7 @@ "pageStart": 1347, "title": "Sleep Drive Is Encoded by Neural Plastic Changes in a Dedicated Circuit", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -2639,6 +2670,7 @@ }, "title": "Eight different types of dopaminergic neurons innervate the Drosophila mushroom body neuropil: anatomical and physiological heterogeneity", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -2725,6 +2757,7 @@ "pageStart": 285, "title": "Imaging Taste Responses in the Fly Brain Reveals a Functional Map of Taste Category and Behavior", "meta": { + "yearPublished": "2006", "publicationType": "journal" } }, @@ -2784,6 +2817,7 @@ "pageStart": 941, "title": "Dopaminergic Modulation of Sucrose Acceptance Behavior in Drosophila", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -2834,6 +2868,7 @@ "pageStart": 14833, "title": "Limited taste discrimination in Drosophila", "meta": { + "yearPublished": "2010", "publicationType": "journal" } }, @@ -2911,6 +2946,7 @@ "pageStart": 1535, "title": "A Dopamine-Modulated Neural Circuit Regulating Aversive Taste Memory in Drosophila", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -3009,6 +3045,7 @@ }, "title": "Closed-loop optogenetic activation of peripheral or central neurons modulates feeding in freely moving Drosophila", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -3068,6 +3105,7 @@ "pageStart": 1023, "title": "Delayed Dopamine Signaling of Energy Level Builds Appetitive Long-Term Memory in Drosophila", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -3136,6 +3174,7 @@ "pageStart": 1783, "title": "A GABAergic Feedback Shapes Dopaminergic Input on the Drosophila Mushroom Body to Promote Appetitive Long-Term Memory", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -3222,6 +3261,7 @@ "pageStart": 945, "title": "Different Kenyon Cell Populations Drive Learned Approach and Avoidance in Drosophila", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -3326,6 +3366,7 @@ "pageStart": 15510, "title": "Upregulated energy metabolism in the Drosophila mushroom body is the trigger for long-term memory", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -3448,6 +3489,7 @@ "pageStart": 592, "title": "Slow oscillations in two pairs of dopaminergic neurons gate long-term memory formation in Drosophila", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -3516,6 +3558,7 @@ "pageStart": 1072, "title": "Dopamine neurons create Pavlovian conditioned stimuli with circuit-defined motivational properties", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -3602,6 +3645,7 @@ "pageStart": 10495, "title": "Dopamine and Octopamine Differentiate between Aversive and Appetitive Olfactory Memories in Drosophila", "meta": { + "yearPublished": "2003", "publicationType": "journal" } }, @@ -3674,6 +3718,7 @@ }, "title": "Internal amino acid state modulates yeast taste neurons to support protein homeostasis in Drosophila", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -3715,6 +3760,7 @@ "pageStart": 3, "title": "The organization of the chemosensory system in Drosophila melanogaster: a rewiew", "meta": { + "yearPublished": "1994", "publicationType": "journal" } }, @@ -3774,6 +3820,7 @@ "pageStart": 711, "title": "Neuronal assemblies of the Drosophila mushroom body", "meta": { + "yearPublished": "2008", "publicationType": "journal" } }, @@ -3863,6 +3910,7 @@ }, "title": "A subset of sweet-sensing neurons identified by IR56d are necessary and sufficient for fatty acid taste", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -3931,6 +3979,7 @@ "pageStart": 1065, "title": "Taste Perception and Coding in Drosophila", "meta": { + "yearPublished": "2004", "publicationType": "journal" } }, @@ -3981,6 +4030,7 @@ "pageStart": 510, "title": "Dynamics of Learning-Related cAMP Signaling and Stimulus Integration in the Drosophila Olfactory Pathway", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -4049,6 +4099,7 @@ "pageStart": 1647, "title": "Parallel Processing of Appetitive Short-and Long-Term Memories In Drosophila", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -4147,6 +4198,7 @@ }, "title": "Shared mushroom body circuits underlie visual and olfactory memories in Drosophila", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -4207,6 +4259,7 @@ "pageStart": 75, "title": "Teaching children to like and eat vegetables", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -4275,6 +4328,7 @@ "pageStart": 981, "title": "Taste Representations in the Drosophila Brain", "meta": { + "yearPublished": "2004", "publicationType": "journal" } }, @@ -4388,6 +4442,7 @@ "pageStart": 578, "title": "Distinct dopamine neurons mediate reward signals for short-and long-term memories", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -4447,6 +4502,7 @@ "pageStart": 1334, "title": "The Molecular Basis for Attractive Salt-Taste Coding in Drosophila", "meta": { + "yearPublished": "2013", "publicationType": "journal" } } diff --git a/src/codecs/jats/__file_snapshots__/d6f14042-6db3-1014-b228-f9da7cb8e4cc.json b/src/codecs/jats/__file_snapshots__/d6f14042-6db3-1014-b228-f9da7cb8e4cc.json index 83b58f386..209085290 100644 --- a/src/codecs/jats/__file_snapshots__/d6f14042-6db3-1014-b228-f9da7cb8e4cc.json +++ b/src/codecs/jats/__file_snapshots__/d6f14042-6db3-1014-b228-f9da7cb8e4cc.json @@ -401,6 +401,7 @@ "pageStart": 1, "title": "Auxiliary Variables in Mixture Modeling: Using the BCH Method in Mplus to Estimate a Distal Outcome Model and an Arbitrary Second Model", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -461,6 +462,7 @@ "title": "A short questionnaire for the measurement of habitual physical activity in epidemiological studies", "url": "https://doi.org/10.1093/ajcn/36.5.936", "meta": { + "yearPublished": "1982", "publicationType": "journal" } }, @@ -579,6 +581,7 @@ "title": "Influence of puberty timing on adiposity and cardiometabolic traits: A Mendelian randomisation study", "url": "https://doi.org/10.1371/journal.pmed.1002641", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -796,6 +799,7 @@ "title": "Quantification of the pace of biological aging in humans through a blood test, the DunedinPoAm DNA methylation algorithm", "url": "https://doi.org/10.7554/eLife.54870", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -1010,6 +1014,7 @@ "title": "DunedinPACE, A DNA methylation biomarker of the Pace of Aging", "url": "https://doi.org/10.7554/eLife.73420", "meta": { + "yearPublished": "2022", "publicationType": "journal" } }, @@ -1081,6 +1086,7 @@ "title": "Identifying opportunities for cancer prevention during preadolescence and adolescence: Puberty as a window of susceptibility. Journal of Adole", "url": "https://doi.org/10.1016/j.jadohealth.2012.09.019", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -1192,6 +1198,7 @@ "pageStart": 149, "title": "A New, Semi-Structured Psychiatric Interview for Use in Genetic Linkage Studies: A Report on the Reliability of the SSAGA", "meta": { + "yearPublished": "1994", "publicationType": "journal" } }, @@ -1260,6 +1267,7 @@ "title": "Body mass index cut offs to define thinness in children and adolescents: International survey", "url": "https://doi.org/10.1136/bmj.39238.399444.55", "meta": { + "yearPublished": "2007", "publicationType": "journal" } }, @@ -1365,6 +1373,7 @@ "title": "Shared genetic aetiology of puberty timing between sexes and with health-related outcomes", "url": "https://doi.org/10.1038/ncomms9842", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -1500,6 +1509,7 @@ "title": "Obesity and accelerated epigenetic aging in a high-risk cohort of children", "url": "https://doi.org/10.1101/2021.11.03.21265865", "meta": { + "yearPublished": "2021", "publicationType": "website" } }, @@ -1573,6 +1583,7 @@ "title": "Early life adversity, pubertal timing, and epigenetic age acceleration in adulthood", "url": "https://doi.org/10.1002/dev.22085", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -1748,6 +1759,7 @@ "title": "Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates", "url": "https://doi.org/10.1016/j.molcel.2012.10.016", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -1812,6 +1824,7 @@ "pageStart": 1839, "title": "External-environmental and internal-health early life predictors of adolescent development", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -1851,6 +1864,7 @@ "title": "DNA methylation age of human tissues and cell types", "url": "https://doi.org/10.1186/gb-2013-14-10-r115", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -1953,6 +1967,7 @@ "title": "Leisure-Time and Occupational Physical Activity Associates Differently with Epigenetic Aging", "url": "https://doi.org/10.1249/mss.0000000000002498", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -1991,6 +2006,7 @@ "title": "The Finnish Twin Cohort Study: an update", "url": "https://doi.org/10.1017/thg.2012.142", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -2056,6 +2072,7 @@ "pageStart": 739, "title": "Common Genetic Influences on BMI and Age at Menarche", "meta": { + "yearPublished": "1995", "publicationType": "journal" } }, @@ -2155,6 +2172,7 @@ "title": "Physical activity in adulthood: Genes and mortality", "url": "https://doi.org/10.1038/srep18259", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -2225,6 +2243,7 @@ "title": "Life Course Epidemiology", "url": "https://doi.org/10.1136/jech.57.10.778", "meta": { + "yearPublished": "2003", "publicationType": "journal" } }, @@ -2310,6 +2329,7 @@ "title": "Drinking, smoking, and educational achievement: Cross-lagged associations from adolescence to adulthood", "url": "https://doi.org/10.1016/j.drugalcdep.2014.01.016", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -2510,6 +2530,7 @@ "title": "An epigenetic biomarker of aging for lifespan and healthspan", "url": "https://doi.org/10.18632/aging.101414", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -2566,6 +2587,7 @@ "title": "Physical activity and risk of cardiovascular disease: What does the new epidemiological evidence show?", "url": "https://doi.org/10.1097/HCO.0b013e328364289c", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -2649,6 +2671,7 @@ "title": "Association between obesity and puberty timing: A systematic review and meta-analysis", "url": "https://doi.org/10.3390/ijerph14101266", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -2696,6 +2719,7 @@ "title": "The combined effects of healthy lifestyle behaviors on all cause mortality: A systematic review and meta-analysis", "url": "https://doi.org/10.1016/j.ypmed.2012.06.017", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -2752,6 +2776,7 @@ "title": "Physical activity and all-cause mortality: An updated meta-analysis with different intensity categories", "url": "https://doi.org/10.1055/s-0028-1128150", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -2827,6 +2852,7 @@ "title": "The Hallmarks of Aging", "url": "https://doi.org/10.1016/j.cell.2013.05.039", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -2905,6 +2931,7 @@ "title": "Global and regional burden of disease and risk factors, 2001: systematic analysis of population health data", "url": "https://doi.org/10.1016/S0140-6736(06)68770-9", "meta": { + "yearPublished": "2006", "publicationType": "journal" } }, @@ -3067,6 +3094,7 @@ "title": "DNA methylation GrimAge strongly predicts lifespan and healthspan", "url": "https://doi.org/10.18632/aging.101684", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -3186,6 +3214,7 @@ "title": "BMI is positively associated with accelerated epigenetic aging in twin pairs discordant for BMI", "url": "https://doi.org/10.1101/2021.03.11.21253271", "meta": { + "yearPublished": "2021", "publicationType": "website" } }, @@ -3280,6 +3309,7 @@ "title": "Childhood growth and development and DNA methylation age in mid-life", "url": "https://doi.org/10.1186/s13148-021-01138-x", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -3328,6 +3358,7 @@ "pageStart": 195, "title": "Trajectories of Alcohol Use during the Transition to Adulthood", "meta": { + "yearPublished": "2005", "publicationType": "journal" } }, @@ -3411,6 +3442,7 @@ "title": "Genome-wide association studies identify 137 loci for DNA methylation biomarkers of ageing", "url": "https://doi.org/10.1186/s13059-021-02398-9", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -3454,6 +3486,7 @@ "title": "Mplus User’s Guide. Eight Edition", "url": "https://www.statmodel.com", "meta": { + "yearPublished": "1998-2018", "publicationType": "book" } }, @@ -3496,6 +3529,7 @@ }, "title": "Methodology for Genetic Studies of Twins and Families", "meta": { + "yearPublished": "1992", "publicationType": "book" } }, @@ -3570,6 +3604,7 @@ "title": "A systematic review of biological, social and environmental factors associated with epigenetic clock acceleration", "url": "https://doi.org/10.1016/j.arr.2021.101348", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -3614,6 +3649,7 @@ "pageStart": 545, "title": "Fetal, Infant, and Childhood Growth Are Predictors of Coronary Heart Disease, Diabetes, and Hypertension in Adult Men and Women", "meta": { + "yearPublished": "2000", "publicationType": "journal" } }, @@ -3681,6 +3717,7 @@ "title": "The impact of childhood obesity on morbidity and mortality in adulthood: A systematic review", "url": "https://doi.org/10.1111/j.1467-789X.2012.01015.x", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -3742,6 +3779,7 @@ "pageStart": 117, "title": "A self-report measure of pubertal status: Reliability, validity, and initial norms", "meta": { + "yearPublished": "1988", "publicationType": "journal" } }, @@ -3794,6 +3832,7 @@ "title": "From Developmental Origins of Adult Disease to Life Course Research on Adult Disease and Aging: Insights from Birth Cohort Studies", "url": "https://doi.org/10.1146/annurev-publhealth-031912-114423", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -3842,6 +3881,7 @@ "title": "Pubertal timing and adult obesity and cardiometabolic risk in women and men: A systematic review and meta-analysis", "url": "https://doi.org/10.1038/ijo.2012.177", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -3933,6 +3973,7 @@ "title": "Socioeconomic disadvantage and the pace of biological aging in children", "url": "https://doi.org/10.1542/peds.2020-024406", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -3981,6 +4022,7 @@ "title": "Long-term impact of overweight and obesity in childhood and adolescence on morbidity and premature mortality in adulthood: Systematic review", "url": "https://doi.org/10.1038/ijo.2010.222", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -4060,6 +4102,7 @@ "title": "Ability of the atherosclerosis risk in communities (ARIC)/baecke questionnaire to assess leisure-time physical activity", "url": "https://doi.org/10.1093/ije/24.4.685", "meta": { + "yearPublished": "1995", "publicationType": "journal" } }, @@ -4132,6 +4175,7 @@ "title": "Use of genetic variation to separate the effects of early and later life adiposity on disease risk: Mendelian randomisation study", "url": "https://doi.org/10.1136/bmj.m1203", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -4303,6 +4347,7 @@ "title": "FinnTwin12 Cohort: An Updated Review", "url": "https://doi.org/10.1017/thg.2019.83", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -4436,6 +4481,7 @@ "title": "Longitudinal physical activity trajectories from childhood to adulthood and their determinants: The Young Finns Study", "url": "https://doi.org/10.1111/sms.12988", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -4565,6 +4611,7 @@ "title": "Smoking and physical activity trajectories from childhood to midlife", "url": "https://doi.org/10.3390/ijerph16060974", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -4669,6 +4716,7 @@ "title": "Early maturation and substance use across adolescence and young adulthood: A longitudinal study of Finnish twins", "url": "https://doi.org/10.1017/S0954579417000487", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -4744,6 +4792,7 @@ "title": "Polygenic Score for Physical Activity Is Associated with Multiple Common Diseases", "url": "https://doi.org/10.1249/mss.0000000000002788", "meta": { + "yearPublished": "2022", "publicationType": "journal" } }, @@ -4870,6 +4919,7 @@ "title": "The epigenetic clock and physical development during childhood and adolescence: longitudinal analysis from a UK birth cohort", "url": "https://doi.org/10.1093/ije/dyw307", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -4981,6 +5031,7 @@ "pageStart": 318, "title": "Associations of Alcohol Consumption With EpigenomelWide DNA Methylation and Epigenetic Age Acceleration: Individual-Level and Co-twin Comparison Analyses", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -5075,6 +5126,7 @@ "title": "Genetic and environmental influences on pubertal timing assessed by height growth", "url": "https://doi.org/10.1002/ajhb.20748", "meta": { + "yearPublished": "2008", "publicationType": "journal" } }, @@ -5167,6 +5219,7 @@ "title": "Clustering of health-related behaviours within children aged 11–16: a systematic review", "url": "https://doi.org/10.1186/s12889-020-10140-6", "meta": { + "yearPublished": "2021", "publicationType": "journal" } } diff --git a/src/codecs/jats/__file_snapshots__/e9291f49-6d06-1014-9500-e156797df82e.json b/src/codecs/jats/__file_snapshots__/e9291f49-6d06-1014-9500-e156797df82e.json index c4683e362..308eb7b72 100644 --- a/src/codecs/jats/__file_snapshots__/e9291f49-6d06-1014-9500-e156797df82e.json +++ b/src/codecs/jats/__file_snapshots__/e9291f49-6d06-1014-9500-e156797df82e.json @@ -556,6 +556,7 @@ "title": "Epigenetic remodelling licences adult cholangiocytes for organoid formation and liver regeneration", "url": "https://doi.org/10.1038/s41556-019-0402-6", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -579,6 +580,7 @@ }, "title": "FastQC: a quality control tool for high throughput sequence data", "meta": { + "yearPublished": "2010", "publicationType": "other" } }, @@ -667,6 +669,7 @@ "title": "Increase in long-chain polyunsaturated fatty acid n−6/n−3 ratio in relation to hepatic steatosis in patients with non-alcoholic fatty liver disease", "url": "https://doi.org/10.1042/CS20030326", "meta": { + "yearPublished": "2004", "publicationType": "journal" } }, @@ -808,6 +811,7 @@ "title": "QuPath: Open source software for digital pathology image analysis", "url": "https://doi.org/10.1038/s41598-017-17204-5", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -1085,6 +1089,7 @@ "title": "High-fat diet enhances stemness and tumorigenicity of intestinal progenitors", "url": "https://doi.org/10.1038/nature17173", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -1209,6 +1214,7 @@ "title": "E2F transcription factor-1 regulates oxidative metabolism", "url": "https://doi.org/10.1038/ncb2309", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -1517,6 +1523,7 @@ "title": "Fat Induces Glucose Metabolism in Nontransformed Liver Cells and Promotes Liver Tumorigenesis", "url": "https://doi.org/10.1158/0008-5472.CAN-20-1954", "meta": { + "yearPublished": "2021", "publicationType": "journal" } }, @@ -1605,6 +1612,7 @@ "title": "Culture and establishment of self-renewing human and mouse adult liver and pancreas 3D organoids and their genetic manipulation", "url": "https://doi.org/10.1038/nprot.2016.097", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -1648,6 +1656,7 @@ "title": "NAFLD: A multisystem disease", "url": "https://doi.org/10.1016/j.jhep.2014.12.012", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -1886,6 +1895,7 @@ "title": "Sphingolipids control dermal fibroblast heterogeneity", "url": "https://doi.org/10.1126/science.abh1623", "meta": { + "yearPublished": "2022", "publicationType": "journal" } }, @@ -1947,6 +1957,7 @@ "title": "Extensive Conversion of Hepatic Biliary Epithelial Cells to Hepatocytes After Near Total Loss of Hepatocytes in Zebrafish", "url": "https://doi.org/10.1053/j.gastro.2013.10.019", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -2054,6 +2065,7 @@ "title": "Microarray analyses and molecular profiling of steatosis induction in immortalized human hepatocytes", "url": "https://doi.org/10.1038/labinvest.3700590", "meta": { + "yearPublished": "2007", "publicationType": "journal" } }, @@ -2105,6 +2117,7 @@ "title": "E2F1, a Novel Regulator of Metabolism", "url": "https://doi.org/10.3389/fendo.2017.00311", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -2238,6 +2251,7 @@ "title": "E2F1 mediates sustained lipogenesis and contributes to hepatic steatosis", "url": "https://doi.org/10.1172/JCI81542", "meta": { + "yearPublished": "2015", "publicationType": "journal" } }, @@ -2380,6 +2394,7 @@ "title": "Chronic Liver Injury Induces Conversion of Biliary Epithelial Cells into Hepatocytes", "url": "https://doi.org/10.1016/j.stem.2018.05.022", "meta": { + "yearPublished": "2018", "publicationType": "journal" } }, @@ -2423,6 +2438,7 @@ "title": "The E2F transcriptional network: old acquaintances with new faces", "url": "https://doi.org/10.1038/sj.onc.1208612", "meta": { + "yearPublished": "2005", "publicationType": "journal" } }, @@ -2529,6 +2545,7 @@ "title": "STAR: ultrafast universal RNA-seq aligner", "url": "https://doi.org/10.1093/bioinformatics/bts635", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -2563,6 +2580,7 @@ "title": "The regulation of E2F by pRB-family proteins", "url": "https://doi.org/10.1101/gad.12.15.2245", "meta": { + "yearPublished": "1998", "publicationType": "journal" } }, @@ -2597,6 +2615,7 @@ "title": "RB1 : a prototype tumor suppressor and an enigma", "url": "https://doi.org/10.1101/gad.282145.116", "meta": { + "yearPublished": "2016", "publicationType": "journal" } }, @@ -2704,6 +2723,7 @@ "title": "Liver Progenitor Cells Yield Functional Hepatocytes in Response to Chronic Liver Injury in Mice", "url": "https://doi.org/10.1053/j.gastro.2012.08.024", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -2756,6 +2776,7 @@ "title": "Epithelial Plasticity during Liver Injury and Regeneration", "url": "https://doi.org/10.1016/j.stem.2020.08.016", "meta": { + "yearPublished": "2020", "publicationType": "journal" } }, @@ -2853,6 +2874,7 @@ "title": "The portal inflammatory infiltrate and ductular reaction in human nonalcoholic fatty liver disease", "url": "https://doi.org/10.1002/hep.26937", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -3104,6 +3126,7 @@ "title": "Human biliary epithelial cells from discarded donor livers rescue bile duct structure and function in a mouse model of biliary disease", "url": "https://doi.org/10.1016/j.stem.2022.02.006", "meta": { + "yearPublished": "2022", "publicationType": "journal" } }, @@ -3174,6 +3197,7 @@ "title": "Regulation of the PDK4 Isozyme by the Rb-E2F1 Complex", "url": 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"publicationType": "journal" } }, @@ -4459,6 +4495,7 @@ "title": "Stem/Progenitor Cells in Liver Development, Homeostasis, Regeneration, and Reprogramming", "url": "https://doi.org/10.1016/j.stem.2014.04.010", "meta": { + "yearPublished": "2014", "publicationType": "journal" } }, @@ -4502,6 +4539,7 @@ "title": "The multiple connections between pRB and cell metabolism", "url": "https://doi.org/10.1016/j.ceb.2013.07.012", "meta": { + "yearPublished": "2013", "publicationType": "journal" } }, @@ -4608,6 +4646,7 @@ "title": "Potential hepatic stem cells reside in EpCAM+ cells of normal and injured mouse liver", "url": "https://doi.org/10.1242/dev.031369", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -4650,6 +4689,7 @@ "pageStart": 9, "title": "Non alcoholic fatty liver disease and metabolic syndrome", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -4802,6 +4842,7 @@ "title": "Single-Cell Analysis of the Liver Epithelium Reveals Dynamic Heterogeneity and an Essential Role for YAP in Homeostasis and Regeneration", "url": "https://doi.org/10.1016/j.stem.2019.04.004", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -5179,6 +5220,7 @@ "title": "YAP, but Not RSPO-LGR4/5, Signaling in Biliary Epithelial Cells Promotes a Ductular Reaction in Response to Liver Injury", "url": "https://doi.org/10.1016/j.stem.2019.04.005", "meta": { + "yearPublished": "2019", "publicationType": "journal" } }, @@ -5330,6 +5372,7 @@ "title": "Cholangiocytes act as facultative liver stem cells during impaired hepatocyte regeneration", "url": "https://doi.org/10.1038/nature23015", "meta": { + "yearPublished": "2017", "publicationType": "journal" } }, @@ -5418,6 +5461,7 @@ "title": "E2F integrates cell cycle progression with DNA repair, replication, and G 2 /M checkpoints", "url": "https://doi.org/10.1101/gad.949802", "meta": { + "yearPublished": "2002", "publicationType": "journal" } }, @@ -5606,6 +5650,7 @@ 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Springer International Publishing", "url": "https://doi.org/10.1007/978-3-319-24277-4", "meta": { + "yearPublished": "2016", "publicationType": "book" } }, @@ -7353,6 +7411,7 @@ "title": "Lipid accumulation in hepatocytes induces fibrogenic activation of hepatic stellate cells", "url": "https://doi.org/10.1038/cr.2009.73", "meta": { + "yearPublished": "2009", "publicationType": "journal" } }, @@ -7396,6 +7455,7 @@ "title": "Facultative stem cells in liver and pancreas: Fact and fancy", "url": "https://doi.org/10.1002/dvdy.22561", "meta": { + "yearPublished": "2011", "publicationType": "journal" } }, @@ -7457,6 +7517,7 @@ "title": "clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters", "url": "https://doi.org/10.1089/omi.2011.0118", "meta": { + "yearPublished": "2012", "publicationType": "journal" } }, @@ -7599,6 +7660,7 @@ "title": "NAD + repletion improves mitochondrial and stem cell function and enhances life span in mice", "url": "https://doi.org/10.1126/science.aaf2693", "meta": { + "yearPublished": "2016", "publicationType": "journal" } } diff --git a/src/codecs/jats/__file_snapshots__/elife-30274-v1.yaml b/src/codecs/jats/__file_snapshots__/elife-30274-v1.yaml index 8d5860152..5ff503e1d 100644 --- a/src/codecs/jats/__file_snapshots__/elife-30274-v1.yaml +++ b/src/codecs/jats/__file_snapshots__/elife-30274-v1.yaml @@ -362,6 +362,7 @@ references: volumeNumber: 332 title: The cost of dichotomising continuous variables meta: + yearPublished: '2006' publicationType: journal - 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type: Article id: bib57 @@ -2764,6 +2820,7 @@ references: pageStart: 916 title: Light-sensitive neurons and channels mediate phototaxis in C. elegans meta: + yearPublished: '2008' publicationType: journal - type: Article id: bib58 @@ -2841,6 +2898,7 @@ references: pageStart: 1 title: Sensorimotor computation underlying phototaxis in zebrafish meta: + yearPublished: '2017' publicationType: journal - type: Article id: bib59 @@ -2889,6 +2947,7 @@ references: Asymmetry in the clockwise and counterclockwise rotation of the bacterial flagellar motor meta: + yearPublished: '2010' publicationType: journal title: >- From behavior to circuit modeling of light-seeking navigation in zebrafish diff --git a/src/codecs/jats/__file_snapshots__/f1000-7-1655-v1.yaml b/src/codecs/jats/__file_snapshots__/f1000-7-1655-v1.yaml index 31483d3d6..1ae18d321 100644 --- a/src/codecs/jats/__file_snapshots__/f1000-7-1655-v1.yaml +++ b/src/codecs/jats/__file_snapshots__/f1000-7-1655-v1.yaml @@ -282,6 +282,7 @@ references: Technical Working Group (NISO-RP-8-2008) url: https://groups.niso.org/publications/rp/RP-8-2008.pdf meta: + yearPublished: '2008' publicationType: journal - type: Article id: ref-2 @@ -326,6 +327,7 @@ references: pageStart: 545 title: Publish peer reviews. meta: + yearPublished: '2018' publicationType: journal - type: Article id: ref-3 @@ -362,6 +364,7 @@ references: What is open peer review? A systematic review [version 2; referees: 4 approved]. meta: + yearPublished: '2017' publicationType: journal title: Publishing peer review materials meta: diff --git a/src/codecs/jats/__file_snapshots__/f1000-8-1394-v1.yaml b/src/codecs/jats/__file_snapshots__/f1000-8-1394-v1.yaml index d3cfe3608..e85297923 100644 --- a/src/codecs/jats/__file_snapshots__/f1000-8-1394-v1.yaml +++ b/src/codecs/jats/__file_snapshots__/f1000-8-1394-v1.yaml @@ -218,6 +218,7 @@ references: pageStart: 481 title: Hemp food products - A problem? meta: + yearPublished: '2004' label: '1' publicationType: journal - type: Article @@ -251,6 +252,7 @@ references: pageStart: 351 title: Hemp food products - an update. meta: + yearPublished: '2019' label: '2' publicationType: journal - type: Article @@ -265,6 +267,7 @@ references: url: >- https://www.who.int/medicines/access/controlled-substances/CannabidiolCriticalReview.pdf meta: + yearPublished: '2018' label: '3' publicationType: journal - type: Article @@ -282,6 +285,7 @@ references: url: >- https://www.naturalproductsinsider.com/ingredients/researching-safety-and-efficacy-cbd-hemp-extracts meta: + yearPublished: '2018' label: '4' publicationType: journal - type: Article @@ -312,6 +316,7 @@ references: Wirksamkeit von Cannabidiol: Klinische Studien mit Cannabidiol und Cannabidiol-haltigen Extrakten. meta: + yearPublished: '2017' label: '5' publicationType: journal - type: Article @@ -340,6 +345,7 @@ references: pageStart: 65 title: The trouble with CBD oil. meta: + yearPublished: '2018' label: '6' publicationType: journal - type: Article @@ -362,6 +368,7 @@ references: url: >- https://drjohnwilkinson.co.uk/wp-content/uploads/SDI_DrJohn-cannabis-Dec-Drinks-2015-1.pdf meta: + yearPublished: '2015' label: '7' publicationType: journal - type: Article @@ -406,6 +413,7 @@ references: Parental reporting of response to oral cannabis extracts for treatment of refractory epilepsy. meta: + yearPublished: '2015' label: '8' publicationType: journal - type: Article @@ -458,6 +466,7 @@ references: adults with treatment-resistant epilepsies: Expanded access program results. meta: + yearPublished: '2018' label: '9' publicationType: journal - type: Article @@ -505,6 +514,7 @@ references: Cannabidiol in patients with treatment-resistant epilepsy: an open-label interventional trial. meta: + yearPublished: '2016' label: '10' publicationType: journal - type: Article @@ -556,6 +566,7 @@ references: Identification of Psychoactive Degradants of Cannabidiol in Simulated Gastric and Physiological Fluid. meta: + yearPublished: '2016' label: '11' publicationType: journal - type: Article @@ -569,6 +580,7 @@ references: title: European Pharmacopoeia url: https://www.edqm.eu/en/european-pharmacopoeia-ph-eur-9th-edition meta: + yearPublished: '2019' label: '12' publicationType: journal - type: Article @@ -587,6 +599,7 @@ references: delta9-tetrahydrocannabinol (THC) contamination url: http://www.doi.org/10.17605/OSF.IO/F7ZXY meta: + yearPublished: '2019' label: '13' publicationType: journal - type: Article @@ -603,6 +616,7 @@ references: url: >- https://www.bfr.bund.de/de/presseinformation/2000/07/bgvv_empfiehlt_richtwerte_fuer_thc__tetrahydrocannabinol__in_hanfhaltigen_lebensmitteln-884.html meta: + yearPublished: '2000' label: '14' publicationType: journal - type: Article @@ -632,6 +646,7 @@ references: Scientific Opinion on the risks for human health related to the presence of tetrahydrocannabinol (THC) in milk and other food of animal origin. meta: + yearPublished: '2015' label: '15' publicationType: journal - type: Article @@ -679,6 +694,7 @@ references: An Assessment of the Genotoxicity and Subchronic Toxicity of a Supercritical Fluid Extract of the Aerial Parts of Hemp. meta: + yearPublished: '2018' label: '16' publicationType: journal - type: Article @@ -723,6 +739,7 @@ references: tetrahydrocannabinol, a physiologically active product. Conversion of cannabidiol to cannabinol. meta: + yearPublished: '1940' label: '17' publicationType: journal - type: Article @@ -764,6 +781,7 @@ references: pageStart: 2209 title: Structure of cannabidiol. XII. Isomerization to tetrahydrocannabinols. meta: + yearPublished: '1941' label: '18' publicationType: journal - type: Article @@ -807,6 +825,7 @@ references: Conversion of cannabidiol to Δ 9-tetrahydrocannabinol and related cannabinoids in artificial gastric juice, and their pharmacological effects in mice. meta: + yearPublished: '2007' label: '19' publicationType: journal - type: Article @@ -843,6 +862,7 @@ references: pageStart: 5 title: Current status of THC in German hemp food products. meta: + yearPublished: '2006' label: '20' publicationType: journal - type: Article @@ -878,6 +898,7 @@ references: Analysis and toxicological evaluation of cannabinoids in hemp food products - a review. meta: + yearPublished: '2005' label: '21' publicationType: journal - type: Article @@ -910,6 +931,7 @@ references: pageStart: 93 title: 'Cannabis use in Europe: Current trends and public health concerns.' meta: + yearPublished: '2019' label: '22' publicationType: journal - type: Article @@ -961,6 +983,7 @@ references: A Conversion of Oral Cannabidiol to Delta9-Tetrahydrocannabinol Seems Not to Occur in Humans. meta: + yearPublished: '2017' label: '23' publicationType: journal - type: Article @@ -1013,6 +1036,7 @@ references: Humans: Comment on Merrick et al.Cannabis and Cannabinoid Research 2016;1(1):102-112; DOI: 10.1089/can.2015.0004. meta: + yearPublished: '2017' label: '24' publicationType: journal - type: Article @@ -1037,6 +1061,7 @@ references: url: >- https://publications.europa.eu/en/publication-detail/-/publication/d2e5f917-9fd7-11e5-8781-01aa75ed71a1/language-en meta: + yearPublished: '2015' label: '25' publicationType: journal - type: Article @@ -1062,6 +1087,7 @@ references: (EC) No 608/2004. url: https://eur-lex.europa.eu/eli/reg/2011/1169/oj meta: + yearPublished: '2011' label: '26' publicationType: journal - type: Article @@ -1083,6 +1109,7 @@ references: url: >- https://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2006:404:0009:0025:EN:PDF meta: + yearPublished: '2006' label: '27' publicationType: journal - type: Article @@ -1125,6 +1152,7 @@ references: Comparative risk assessment of alcohol, tobacco, cannabis and other illicit drugs using the margin of exposure approach. meta: + yearPublished: '2015' label: '28' publicationType: journal - type: Article @@ -1160,6 +1188,7 @@ references: pageStart: 327 title: Pharmacokinetics and pharmacodynamics of cannabinoids. meta: + yearPublished: '2003' label: '29' publicationType: journal - type: Article @@ -1196,6 +1225,7 @@ references: pageStart: 214 title: '[Cannabis poisoning after eating salad].' meta: + yearPublished: '1997' label: '30' publicationType: journal - type: Article @@ -1216,6 +1246,7 @@ references: hoch – gesundheitliche Beeinträchtigungen sind möglich. Stellungnahme Nr. 034/2018 des BfR vom 8. November 2018. meta: + yearPublished: '2018' label: '31' publicationType: journal - type: Article @@ -1265,6 +1296,7 @@ references: pageStart: 1708 title: Labeling Accuracy of Cannabidiol Extracts Sold Online. meta: + yearPublished: '2017' label: '32' publicationType: journal title: >- diff --git a/src/codecs/jats/__file_snapshots__/f1000-8-978-v1.yaml b/src/codecs/jats/__file_snapshots__/f1000-8-978-v1.yaml index be7c5701e..474c7255b 100644 --- a/src/codecs/jats/__file_snapshots__/f1000-8-978-v1.yaml +++ b/src/codecs/jats/__file_snapshots__/f1000-8-978-v1.yaml @@ -288,6 +288,7 @@ references: pageStart: 365 title: Impacts of climate change on the future of biodiversity. meta: + yearPublished: '2012' label: '1' publicationType: journal - type: Article @@ -328,6 +329,7 @@ references: Reframing ecosystem management in the era of climate change: issues and knowledge from forests. meta: + yearPublished: '2013' label: '2' publicationType: journal - type: Article @@ -368,6 +370,7 @@ references: Prediction of climate warming impacts on plant species could be more complex than expected. evidence from a case study in the himalaya. meta: + yearPublished: '2014' label: '3' publicationType: journal - type: Article @@ -388,6 +391,7 @@ references: url: >- https://research.fit.edu/media/site-specific/researchfitedu/coast-climate-adaptation-library/middle-east/regional---middle-east/Elasha.-2010.-Mapping-of-CC-Threats--Human-Development-Impacts-In-The-Arab-Region.pdf meta: + yearPublished: '2010' label: '4' publicationType: journal - type: Article @@ -402,6 +406,7 @@ references: Climate Change and Drylands International Institute for Environmental Development- Commission on Climate Change and Development meta: + yearPublished: '2008' label: '5' publicationType: journal - type: Article @@ -442,6 +447,7 @@ references: Relationships between landforms, soil characteristics and dominant xerophytes in the hyper-arid northern united arab emirates. meta: + yearPublished: '2015' label: '6' publicationType: journal - type: Article @@ -485,6 +491,7 @@ references: Early Growth Stages of the Rare Acridocarpus orientalis in the UAE-A First Step towards Conservation. meta: + yearPublished: '2012' label: '7' publicationType: journal - type: Article @@ -503,6 +510,7 @@ references: title: The physical science basis url: https://www.ipcc.ch/site/assets/uploads/2018/05/ar4_wg1_full_report-1.pdf meta: + yearPublished: '2007' label: '8' publicationType: journal - type: Article @@ -525,6 +533,7 @@ references: url: >- https://pdfs.semanticscholar.org/dbee/e153dac2b70d2c3a237531bfa48f45aa9ec5.pdf meta: + yearPublished: '1998' label: '9' publicationType: journal - type: Article @@ -568,6 +577,7 @@ references: Species: a spatial evaluation of climate impact on the envelope of species. meta: + yearPublished: '2002' label: '10' publicationType: journal - type: Article @@ -608,6 +618,7 @@ references: pageStart: 42 title: Ensemble forecasting of species distributions. meta: + yearPublished: '2007' label: '11' publicationType: journal - type: Article @@ -649,6 +660,7 @@ references: medicinal plant ( h. riparia lour) in yunnan, China. meta: + yearPublished: '2016' label: '12' publicationType: journal - type: Article @@ -696,6 +708,7 @@ references: Climatic-induced shifts in the distribution of teak ( tectona grandis) in tropical asia: implications for forest management and planning. meta: + yearPublished: '2017' label: '13' publicationType: journal - type: Article @@ -734,6 +747,7 @@ references: Competitive interactions between tree species in new zealand’s old-growth indigenous forests. meta: + yearPublished: '2001' label: '14' publicationType: journal - type: Article @@ -777,6 +791,7 @@ references: Avoiding pitfalls of using species distribution models in conservation planning. meta: + yearPublished: '2003' label: '15' publicationType: journal - type: Article @@ -818,6 +833,7 @@ references: pageStart: 386 title: Making better biogeographical predictions of species’ distributions. meta: + yearPublished: '2006' label: '16' publicationType: journal - type: Article @@ -861,6 +877,7 @@ references: Predicting species distributions from small numbers of occurrence records: a test case using cryptic geckos in madagascar. meta: + yearPublished: '2007' label: '17' publicationType: journal - type: Article @@ -901,6 +918,7 @@ references: Climatic niche models and their consensus projections for future climates for four major forest tree species in the Asia–Pacific region. meta: + yearPublished: '2016' label: '18' publicationType: journal - type: Article @@ -944,6 +962,7 @@ references: Predicting the impacts of climate change on the distribution of juniperus excelsa m. bieb. in the central and eastern alborz mountains, iran. meta: + yearPublished: '2018' label: '19' publicationType: journal - type: Article @@ -991,6 +1010,7 @@ references: Tradeoffs of different types of species occurrence data for use in systematic conservation planning. meta: + yearPublished: '2006' label: '20' publicationType: journal - type: Article @@ -1040,6 +1060,7 @@ references: pageStart: 1424 title: Predicting species distributions for conservation decisions. meta: + yearPublished: '2013' label: '21' publicationType: journal - type: Article @@ -1081,6 +1102,7 @@ references: pageStart: 231 title: Maximum entropy modeling of species geographic distributions. meta: + yearPublished: '2006' label: '22' publicationType: journal - type: Article @@ -1124,6 +1146,7 @@ references: The effect of sample size and species characteristics on performance of different species distribution modeling methods. meta: + yearPublished: '2006' label: '23' publicationType: journal - type: Article @@ -1147,6 +1170,7 @@ references: pageStart: 102 title: Raxworthy cj, nakamura m, townsend peterson a. meta: + yearPublished: '2007' label: '24' publicationType: journal - type: Article @@ -1188,6 +1212,7 @@ references: pageStart: 231 title: Maximum entropy modeling of species geographic distributions. meta: + yearPublished: '2006' label: '25' publicationType: journal - type: Article @@ -1233,6 +1258,7 @@ references: pageStart: 199 title: Calotropis procera (ushaar) keratitis. meta: + yearPublished: '2005' label: '26' publicationType: journal - type: Article @@ -1269,6 +1295,7 @@ references: pageStart: 288 title: Artificial forests as conservation sites for the native flora of the uae. meta: + yearPublished: '2005' label: '27' publicationType: journal - type: Article @@ -1294,6 +1321,7 @@ references: value: '2004' title: The worldclim interpolated global terrestrial climate surfaces meta: + yearPublished: '2004' label: '28' publicationType: journal - type: Article @@ -1306,6 +1334,7 @@ references: value: '2012' title: Arcgis 10.1 meta: + yearPublished: '2012' label: '29' publicationType: journal - type: Article @@ -1346,6 +1375,7 @@ references: pageStart: 77 title: 'Rcp 4.5: a pathway for stabilization of radiative forcing by 2100.' meta: + yearPublished: '2011' label: '30' publicationType: journal - type: Article @@ -1387,6 +1417,7 @@ references: pageStart: 1965 title: Very high resolution interpolated climate surfaces for global land areas. meta: + yearPublished: '2005' label: '31' publicationType: journal - type: Article @@ -1430,6 +1461,7 @@ references: Novel methods improve prediction of species’ distributions from occurrence data. meta: + yearPublished: '2006' label: '32' publicationType: journal - type: Article @@ -1482,6 +1514,7 @@ references: Locating pleistocene refugia: comparing phylogeographic and ecological niche model predictions. meta: + yearPublished: '2007' label: '33' publicationType: journal - type: Article @@ -1518,6 +1551,7 @@ references: url: >- http://www.academicjournals.org/app/webroot/article/article1379515268_Kumar%20and%20Stohlgren.pdf meta: + yearPublished: '2009' label: '34' publicationType: journal - type: Article @@ -1561,6 +1595,7 @@ references: Botanical richness and endemicity patterns of borneo derived from species distribution models. meta: + yearPublished: '2009' label: '35' publicationType: journal - type: Article @@ -1615,6 +1650,7 @@ references: Felis chaus) and leopard cat ( Prionailurus bengalensis) in India. meta: + yearPublished: '2010' label: '36' publicationType: journal - type: Article @@ -1656,6 +1692,7 @@ references: pageStart: 43 title: A statistical explanation of maxent for ecologists. meta: + yearPublished: '2011' label: '37' publicationType: journal - type: Article @@ -1695,6 +1732,7 @@ references: Species-specific tuning increases robustness to sampling bias in models of species distributions: an implementation with maxent. meta: + yearPublished: '2011' label: '38' publicationType: journal - type: Article @@ -1738,6 +1776,7 @@ references: Assessing the accuracy of species distribution models: prevalence, kappa and the true skill statistic (tss). meta: + yearPublished: '2006' label: '39' publicationType: journal - type: Article @@ -1778,6 +1817,7 @@ references: Predicting impacts of climate change on medicinal asclepiads of pakistan using maxent modeling. meta: + yearPublished: '2013' label: '40' publicationType: journal - type: Article @@ -1794,6 +1834,7 @@ references: title: Sure2018.zip url: https://figshare.com/articles/SURE2018_zip/8233328/1 meta: + yearPublished: '2019' label: '41' publicationType: journal - type: Article @@ -1846,6 +1887,7 @@ references: Metabolomic response of Calotropis procera growing in the desert to changes in water availability. meta: + yearPublished: '2014' label: '42' publicationType: journal - type: Article @@ -1890,6 +1932,7 @@ references: Ecophysiological performance of calotropis procera: an exotic and evergreen species in caatinga, brazilian semi-arid. meta: + yearPublished: '2013' label: '43' publicationType: journal - type: Article @@ -1908,6 +1951,7 @@ references: cineraria": A wonder tree for agroforestry in arid and semi-arid areas" url: http://repo.mel.cgiar.org/handle/20.500.11766/4908 meta: + yearPublished: '2016' label: '44' publicationType: journal - type: Article @@ -1920,6 +1964,7 @@ references: value: '2015' title: State of Environment Report of the United Arab Emirates 2015 meta: + yearPublished: '2015' label: '45' publicationType: journal - type: Article @@ -1964,6 +2009,7 @@ references: Camel grazing affects species diversity and community structure in the deserts of the UAE. meta: + yearPublished: '2009' label: '46' publicationType: journal - type: Article @@ -1978,6 +2024,7 @@ references: url: >- https://www.moccae.gov.ae/assets/30e58e2e/national-climate-change-plan-for-the-united-arab-emirates-2017-2050.aspx meta: + yearPublished: '2017' label: '47' publicationType: journal title: Climate change-induced species distribution modeling in hyper-arid ecosystems diff --git a/src/codecs/jats/__file_snapshots__/ijm-00202.yaml b/src/codecs/jats/__file_snapshots__/ijm-00202.yaml index 0f7b2307a..245926c90 100644 --- a/src/codecs/jats/__file_snapshots__/ijm-00202.yaml +++ b/src/codecs/jats/__file_snapshots__/ijm-00202.yaml @@ -166,6 +166,7 @@ references: pageStart: 1 title: Gender-Based taxation and the division of family chores meta: + yearPublished: '2011' publicationType: journal - type: Article id: bib3 @@ -205,6 +206,7 @@ references: La segregación ocupacional de género y las diferencias en las remuneraciones de los asalariados privados. Uruguay, 1990-2000 meta: + yearPublished: '2004' publicationType: journal - type: Article id: bib34 @@ -242,6 +244,7 @@ references: pageStart: 141 title: Gender bias in Tax systems based on household income meta: + yearPublished: '2015' publicationType: journal - type: Article id: bib4 @@ -264,6 +267,7 @@ references: name: Cambridge University Press title: Public economics and the household meta: + yearPublished: '2009' publicationType: book - type: Article id: bib5 @@ -296,6 +300,7 @@ references: pageStart: 297 title: Family labor supply, taxation and saving in an imperfect capital market meta: + yearPublished: '2010' publicationType: journal - type: Article id: bib6 @@ -330,6 +335,7 @@ references: Taxation of married couples in Germany and the UK: One-earner couples make the difference meta: + yearPublished: '2013' publicationType: journal - type: Article id: bib7 @@ -362,6 +368,7 @@ references: pageStart: 121 title: 'Strengthening a fiscal Pillar: the Uruguayan dual income tax' meta: + yearPublished: '2007' publicationType: journal - type: Article id: bib8 @@ -386,6 +393,7 @@ references: Revealing Gender Gap Changes in Home Production and Labor Income in Uruguay WP 5/18 meta: + yearPublished: '2018' publicationType: report - type: Article id: bib9 @@ -413,6 +421,7 @@ references: pageStart: 63 title: 'Salarios femeninos en Uruguay: ¿existe un techo de cristal?' meta: + yearPublished: '2005' publicationType: journal - type: Article id: bib10 @@ -432,6 +441,7 @@ references: ZOIB: Stata module to fit a zero-one inflated beta distribution by maximum likelihood meta: + yearPublished: '2012' publicationType: journal - type: Article id: bib35 @@ -460,6 +470,7 @@ references: Documentos de Trabajo, DT 06/2014, Instituto de Economía, Facultad de Ciencias Económicas y Administración meta: + yearPublished: '2014' publicationType: book - type: Article id: bib11 @@ -495,6 +506,7 @@ references: 03/2015, Instituto de Economía, Facultad de Ciencias Económicas y Administración meta: + yearPublished: '2015' publicationType: book - type: Article id: bib12 @@ -532,6 +544,7 @@ references: pageStart: 860 title: Regression analysis of proportions in finance with self selection meta: + yearPublished: '2008' publicationType: journal - type: Article id: bib13 @@ -554,6 +567,7 @@ references: Budgeting for women´s rights: monitoring government budgets for compliance with CEDAW meta: + yearPublished: '2006' publicationType: book - type: Article id: bib14 @@ -578,6 +592,7 @@ references: Brechas salariales en Uruguay: género, segregación y desajustes por calificación meta: + yearPublished: '2013' publicationType: journal - type: Article id: bib15 @@ -610,6 +625,7 @@ references: Desigualdades persistentes: mercado de trabajo, calificación y género. El futuro en foco: Cuadernos sobre Desarrollo Humano meta: + yearPublished: '2014' publicationType: book - type: Article id: bib16 @@ -642,6 +658,7 @@ references: pageStart: 799 title: Beta regression for modelling rates and proportions meta: + yearPublished: '2004' publicationType: journal - type: Article id: bib17 @@ -674,6 +691,7 @@ references: pageStart: 436 title: Moving towards dual income taxation in Europe meta: + yearPublished: '2007' publicationType: journal - type: Article id: bib20 @@ -704,6 +722,7 @@ references: name: Routledge title: Taxation and gender equality. A conceptual framework meta: + yearPublished: '2010' publicationType: book - type: Article id: bib18 @@ -726,6 +745,7 @@ references: name: Comparative Chapter. Non-published title: Gender Equity and Taxation in Latin America and the Caribbean meta: + yearPublished: '2015' publicationType: report - type: Article id: bib19 @@ -753,6 +773,7 @@ references: Taxation and Gender Equity: A comparative analysis of direct and indirect taxes in developing and developed countries meta: + yearPublished: '2010' publicationType: book - type: Article id: bib21 @@ -790,6 +811,7 @@ references: pageStart: 1113 title: Taxation and household labour supply meta: + yearPublished: '2012' publicationType: journal - type: Article id: bib22 @@ -824,6 +846,7 @@ references: Regression analysis of variates observed on (0, 1): percentages, proportions and fractions meta: + yearPublished: '2003' publicationType: journal - type: Article id: bib23 @@ -851,6 +874,7 @@ references: Tax reform and feminist theory in the United States: incorporating human connection meta: + yearPublished: '1991' publicationType: journal - type: Article id: bib24 @@ -883,6 +907,7 @@ references: pageStart: 111 title: Inflated beta distributions meta: + yearPublished: '2010' publicationType: journal - type: Article id: bib25 @@ -915,6 +940,7 @@ references: pageStart: 1609 title: A general class of zero-or-one inflated beta regression models meta: + yearPublished: '2012' publicationType: journal - type: Article id: bib26 @@ -944,6 +970,7 @@ references: Maximum likelihood estimation of models with beta-distributed dependent variables meta: + yearPublished: '2001' publicationType: journal - type: Article id: bib28 @@ -985,6 +1012,7 @@ references: name: Routledge title: Gender equality and taxation in Argentina meta: + yearPublished: '2010' publicationType: book - type: Article id: bib36 @@ -1007,6 +1035,7 @@ references: Equidad de género del sistema tributario en la Argentina: estimación de la carga fiscal desglosada por tipo de hogar meta: + yearPublished: '2018' publicationType: journal - type: Article id: bib29 @@ -1041,6 +1070,7 @@ references: A better lemon squeezer? maximum-likelihood regression with beta-distributed dependent variables meta: + yearPublished: '2006' publicationType: journal - type: Article id: bib30 @@ -1058,6 +1088,7 @@ references: name: IMF Working Paper, No. 96/99. title: Gender bias in Tax systems meta: + yearPublished: '1996' publicationType: report title: >- Gendered effects of the personal income tax: Evidence from a schedular system diff --git a/src/codecs/jats/__file_snapshots__/plosone-0091296.yaml b/src/codecs/jats/__file_snapshots__/plosone-0091296.yaml index 854d09ec1..8ac718760 100644 --- a/src/codecs/jats/__file_snapshots__/plosone-0091296.yaml +++ b/src/codecs/jats/__file_snapshots__/plosone-0091296.yaml @@ -198,6 +198,7 @@ references: Global human footprints on the linkage between biodiversity and ecosystem functioning in reef fishes meta: + yearPublished: '2011' label: '1' publicationType: journal - type: Article @@ -238,6 +239,7 @@ references: Global effects of local human population density and distance to markets on the condition of coral reef fisheries meta: + yearPublished: '2013' label: '2' publicationType: journal - type: Article @@ -285,6 +287,7 @@ references: Fishing groupers towards extinction: a global assessment of threats and extinction risks in a billion dollar fishery meta: + yearPublished: '2013' label: '3' publicationType: journal - type: Article @@ -308,6 +311,7 @@ references: pageStart: 157 title: Using behaviour and ecology to exploit schooling fishes meta: + yearPublished: '1999' label: '4' publicationType: journal - type: Article @@ -358,6 +362,7 @@ references: pageStart: 325 title: 'Lagoon ecology and social strategies: habitat diversity and ethnobiology' meta: + yearPublished: '2008' label: '7' publicationType: journal - type: Article @@ -400,6 +405,7 @@ references: Historical analysis of Cuban commercial fishing effort and the effects on management interventions on important reef fishes from 1960–2005 meta: + yearPublished: '2009' label: '8' publicationType: journal - type: Article @@ -435,6 +441,7 @@ references: Community-based conservation results in the recovery of reef fish spawning aggregations in the Coral Triangle meta: + yearPublished: '2011' label: '9' publicationType: journal - type: Article @@ -470,6 +477,7 @@ references: Fishery-dependent evaluation of a spawning aggregation of tiger grouper (Mycteroperca tigris) at Vieques Island, Puerto Rico meta: + yearPublished: '2006' label: '10' publicationType: journal - type: Article @@ -511,6 +519,7 @@ references: grouper (E. fuscoguttatus) spawning aggregations at a remote atoll, Seychelles meta: + yearPublished: '2008' label: '11' publicationType: journal - type: Article @@ -539,6 +548,7 @@ references: pageStart: 698 title: 'Tropical reef fish spawning aggregations: defined and reviewed' meta: + yearPublished: '1997' label: '12' publicationType: journal - type: Article @@ -584,6 +594,7 @@ references: pageStart: 1233 title: A global baseline for spawning aggregations of reef fishes meta: + yearPublished: '2008' label: '13' publicationType: journal - type: Article @@ -624,6 +635,7 @@ references: Incorporating time-varying catchability into population dynamic stock assessment models meta: + yearPublished: '2010' label: '14' publicationType: journal - type: Article @@ -664,6 +676,7 @@ references: Reproductive movement, residency and fisheries vulnerability of brown-marbled grouper, Epinephelus fuscoguttatus (Forsskål, 1775) meta: + yearPublished: '2012' label: '15' publicationType: journal - type: Article @@ -709,6 +722,7 @@ references: Temporal dynamics, residency and site fidelity of spawning aggregations of a herbivorous tropical reef fish, Siganus sutor meta: + yearPublished: '2013' label: '16' publicationType: journal - type: Article @@ -740,6 +754,7 @@ references: bluespine unicornfish, Naso unicornis (Acanthuridae) in a Hawaiian marine reserve meta: + yearPublished: '2005' label: '17' publicationType: journal - type: Article @@ -776,6 +791,7 @@ references: patterns of Haemulon sciurus and Lutjanus apodus in the U.S. Virgin Islands meta: + yearPublished: '2011' label: '18' publicationType: journal - type: Article @@ -808,6 +824,7 @@ references: Traditional knowledge possessed by the fishers of Marovo Lagoon, Solomon Islands, concerning fish aggregating behaviour meta: + yearPublished: '2000' label: '19' publicationType: journal - type: Article @@ -838,6 +855,7 @@ references: Trends in development in coastal area management in tropical countries: from central to community orientation meta: + yearPublished: '1997' label: '20' publicationType: journal - 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type: Article @@ -1019,6 +1042,7 @@ references: Characterization of transient multi-species reef fish spawning aggregations at Gladden Spit, Belize meta: + yearPublished: '2008' label: '27' publicationType: journal - type: Article @@ -1054,6 +1078,7 @@ references: pageStart: 254 title: Are aggregation-fisheries sustainable? Reef fish fisheries as a case study meta: + yearPublished: '2005' label: '29' publicationType: journal - type: Article @@ -1097,6 +1122,7 @@ references: pageStart: 372 title: Ecological risk assessment for the effects of fishing meta: + yearPublished: '2011' label: '30' publicationType: journal - type: Article @@ -1142,6 +1168,7 @@ references: Using productivity and susceptibility indices to assess the vulnerability of United States fish stocks to overfishing meta: + yearPublished: '2010' label: '31' publicationType: journal - type: Article @@ -1175,6 +1202,7 @@ references: pageStart: 221 title: 'Catchability: a key parameter for fish stock assessment' meta: + yearPublished: '1996' label: '33' publicationType: journal - type: Article @@ -1218,6 +1246,7 @@ references: pageStart: 206 title: Linking social and ecological systems to sustain coral reef fisheries meta: + yearPublished: '2009' label: '34' publicationType: journal - type: Article @@ -1263,6 +1292,7 @@ references: Preliminary findings on spawning aggregations of reef fishes in East Africa meta: + yearPublished: '2006' label: '35' publicationType: journal - type: Article @@ -1303,6 +1333,7 @@ references: Effects of customary marine closures on fish behaviour, spear-fishing success, and underwater visual surveys meta: + yearPublished: '2010' label: '36' publicationType: journal - type: Article @@ -1338,6 +1369,7 @@ references: Conservation and community benefits from traditional coral reef management at Ahus Island, Papua New Guinea meta: + yearPublished: '2005' label: '37' publicationType: journal - type: Article @@ -1362,6 +1394,7 @@ references: Supporting and enhancing development of heterogeneous ecological knowledge among resource users in a Kenyan seascape meta: + yearPublished: '2006' label: '38' publicationType: journal - type: Article @@ -1392,6 +1425,7 @@ references: Who knows? On the importance of identifying ‘experts’ when researching local ecological knowledge meta: + yearPublished: '2003' label: '39' publicationType: journal - type: Article @@ -1420,6 +1454,7 @@ references: pageStart: 832 title: 'Funding priorities: big barriers to small-scale fisheries' meta: + yearPublished: '2008' label: '40' publicationType: journal - type: Article @@ -1463,6 +1498,7 @@ references: pageStart: 655 title: Current and future sustainability of island coral reef fisheries meta: + yearPublished: '2007' label: '41' publicationType: journal - type: Article @@ -1493,6 +1529,7 @@ references: Quantifying the environmental impacts of artisanal fishing gear on Kenya's coral reef ecosystems meta: + yearPublished: '2006' label: '42' publicationType: journal - type: Article @@ -1528,6 +1565,7 @@ references: Traditional muro-ami, an effective but resource destructive coral reef fishing gear meta: + yearPublished: '1985' label: '43' publicationType: journal - type: Article @@ -1558,6 +1596,7 @@ references: Controlling the false discovery rate: a practical and powerful approach to multiple testing meta: + yearPublished: '1995' label: '44' publicationType: journal - 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type: Article @@ -1752,6 +1796,7 @@ references: Age, growth and reproduction of the blackspot snapper, Lutjanus fulviflamma (Forsskål, 1775), in the southern Arabian Gulf meta: + yearPublished: '2006' label: '52' publicationType: journal - type: Article @@ -1777,6 +1822,7 @@ references: Spawning aggregations of coral reef fishes: characteristics, hypotheses, threats and management meta: + yearPublished: '2004' label: '53' publicationType: journal - type: Article @@ -1807,6 +1853,7 @@ references: The vulnerability of reproductively active squaretail coralgrouper (Plectropomus areolatus) to fishing meta: + yearPublished: '2008' label: '54' publicationType: journal - type: Article @@ -1832,6 +1879,7 @@ references: Reproductive and sexual characteristics in five Lethrinus species in waters off the Ryukyu Islands meta: + yearPublished: '2006' label: '55' publicationType: journal - type: Article @@ -1862,6 +1910,7 @@ references: Site fidelity, size, and spatial arrangement of daytime home range of thumbprint emperor Lethrinus harak (Lethrinidae) meta: + yearPublished: '2009' label: '56' publicationType: journal - type: Article @@ -1911,6 +1960,7 @@ references: Out-migration of tagged fishes from marine reef national parks to fisheries in coastal Kenya meta: + yearPublished: '2004' label: '59' publicationType: journal - type: Article @@ -1944,6 +1994,7 @@ references: pageStart: 333 title: Life history correlates of responses to fisheries exploitation meta: + yearPublished: '1998' label: '60' publicationType: journal - type: Article @@ -1981,6 +2032,7 @@ references: pageStart: 31 title: Periodic closures as adaptive coral reef management in the Indo-Pacific meta: + yearPublished: '2006' label: '61' publicationType: journal title: >- diff --git a/src/codecs/jats/__file_snapshots__/plosone-0093988.yaml b/src/codecs/jats/__file_snapshots__/plosone-0093988.yaml index f4fc83ce2..935a49fa5 100644 --- a/src/codecs/jats/__file_snapshots__/plosone-0093988.yaml +++ b/src/codecs/jats/__file_snapshots__/plosone-0093988.yaml @@ -149,6 +149,7 @@ references: pageStart: 183 title: 'Social dilemmas: The anatomy of cooperation' meta: + yearPublished: '1998' label: '1' publicationType: journal - 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type: Article @@ -319,6 +322,7 @@ references: Rhythm of carbon and nitrogen fixation in unicellular cyanobacteria under turbulent and highly aerobic conditions meta: + yearPublished: '2013' label: '4' publicationType: journal - type: Article @@ -372,6 +376,7 @@ references: Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing meta: + yearPublished: '2013' label: '5' publicationType: journal - type: Article @@ -420,6 +425,7 @@ references: Generic assignments, strain histories and properties of pure cultures of cyanobacteria meta: + yearPublished: '1979' label: '6' publicationType: journal - type: Article @@ -451,6 +457,7 @@ references: pageStart: 2510 title: 'Genome evolution in cyanobacteria: the stable core and the variable shell' meta: + yearPublished: '2008' label: '7' publicationType: journal - type: Article @@ -493,6 +500,7 @@ references: The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms meta: + yearPublished: '2012' label: '8' publicationType: journal - 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PCC 7002: Prediction of flux distribution and network modification for enhanced biofuel production meta: + yearPublished: '2016' label: '23' publicationType: journal - type: Article @@ -1113,6 +1136,7 @@ references: Metabolic flux analysis of Cyanothece sp. ATCC 51142 under mixotrophic conditions meta: + yearPublished: '2013' label: '24' publicationType: journal - type: Article @@ -1159,6 +1183,7 @@ references: pageStart: 1616 title: Whole-genome analysis of photosynthetic prokaryotes meta: + yearPublished: '2002' label: '25' publicationType: journal - type: Article @@ -1196,6 +1221,7 @@ references: Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits meta: + yearPublished: '2011' label: '26' publicationType: journal - type: Article @@ -1244,6 +1270,7 @@ references: Assigning protein functions by comparative genome analysis: protein phylogenetic profiles meta: + yearPublished: '1999' label: '27' publicationType: journal - type: Article @@ -1290,6 +1317,7 @@ references: pageStart: 3150 title: 'CD-HIT: accelerated for clustering the next-generation sequencing data' meta: + yearPublished: '2012' label: '28' publicationType: journal - type: Article @@ -1331,6 +1359,7 @@ references: pageStart: 331 title: A global analysis of adaptive evolution of operons in cyanobacteria meta: + yearPublished: '2013' label: '29' publicationType: journal - type: Article @@ -1380,6 +1409,7 @@ references: Identification and characterization of the last unidentified coenzyme A biosynthetic enzyme in bacteria meta: + yearPublished: '2001' label: '30' publicationType: journal - type: Article @@ -1433,6 +1463,7 @@ references: Structure and function of the phenazine biosynthesis protein PhzF from Pseudomonas fluorescens 2–79 meta: + yearPublished: '2004' label: '31' publicationType: journal - type: Article @@ -1488,6 +1519,7 @@ references: Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens meta: + yearPublished: '2004' label: '32' publicationType: journal - type: Article @@ -1519,6 +1551,7 @@ references: pageStart: 373 title: Circadian rhythms in cyanobacteria meta: + yearPublished: '2015' label: '33' publicationType: journal - type: Article @@ -1568,6 +1601,7 @@ references: Rhythmic and sustained oscillations in metabolism and gene expression of Cyanothece sp. ATCC 51142 under constant light meta: + yearPublished: '2013' label: '34' publicationType: journal - type: Article @@ -1619,6 +1653,7 @@ references: pageStart: 211 title: Cyanobacterial signature genes meta: + yearPublished: '2003' label: '35' publicationType: journal - type: Article @@ -1663,6 +1698,7 @@ references: Photosystem II proteins PsbL and PsbJ regulate electron flow to the plastoquinone pool meta: + yearPublished: '2004' label: '36' publicationType: journal - type: Article @@ -1716,6 +1752,7 @@ references: Protein assembly of photosystem II and accumulation of subcomplexes in the absence of low molecular mass subunits PsbL and PsbJ meta: + yearPublished: '2004' label: '37' publicationType: journal - type: Article @@ -1770,6 +1807,7 @@ references: Chlamydomonas reinhardtii PSI− mutant and their interactions with α‐tocopherol quinone meta: + yearPublished: '2003' label: '38' publicationType: journal - type: Article @@ -1814,6 +1852,7 @@ references: synthase (EntC), the first enzyme involved in the biosynthesis of enterobactin from chorismate meta: + yearPublished: '1990' label: '39' publicationType: journal - type: Article @@ -1855,6 +1894,7 @@ references: pageStart: 374 title: Amino acid sequence homology among fructose-1, 6-bisphosphatases meta: + yearPublished: '1986' label: '40' publicationType: journal - type: Article @@ -1888,6 +1928,7 @@ references: Genetic tagging, cloning, and DNA sequence of the Synechococcus sp. strain PCC 7942 gene (gnd) encoding 6-phosphogluconate dehydrogenase meta: + yearPublished: '1990' label: '41' publicationType: journal - type: Article @@ -1918,6 +1959,7 @@ references: pageStart: 313 title: Gas vesicle proteins meta: + yearPublished: '1989' label: '42' publicationType: journal - type: Article @@ -1956,6 +1998,7 @@ references: Structure and organization of the gas vesicle gene cluster on the Halobacterium halobium plasmid pNRC100 meta: + yearPublished: '1991' label: '43' publicationType: journal - type: Article @@ -1984,6 +2027,7 @@ references: The plasmid-encoded arsenical resistance pump: an anion-translocating ATPase meta: + yearPublished: '1990' label: '44' publicationType: journal - type: Article @@ -2027,6 +2071,7 @@ references: Structure of the ArsA ATPase: the catalytic subunit of a heavy metal resistance pump meta: + yearPublished: '2000' label: '45' publicationType: journal - type: Article @@ -2051,6 +2096,7 @@ references: pageStart: 2010 title: Functional promiscuity of homologues of the bacterial ArsA ATPases meta: + yearPublished: '2010' label: '46' publicationType: journal - type: Article @@ -2099,6 +2145,7 @@ references: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action meta: + yearPublished: '2006' label: '47' publicationType: journal - type: Article @@ -2142,6 +2189,7 @@ references: Helicase dissociation and annealing of RNA-DNA hybrids by Escherichia coli Cas3 protein meta: + yearPublished: '2011' label: '48' publicationType: journal title: >- diff --git a/src/codecs/jats/index.ts b/src/codecs/jats/index.ts index 261f0190e..ed37b30b6 100644 --- a/src/codecs/jats/index.ts +++ b/src/codecs/jats/index.ts @@ -1491,7 +1491,13 @@ export function decodeReference( ] if (identifiers.length === 0) identifiers = undefined - const meta = typeof label === 'string' ? { label } : undefined + const metaEntries: Record = {} + if (datePublishedString !== undefined) { + metaEntries.yearPublished = datePublishedString + } + if (typeof label === 'string') { + metaEntries.label = label + } return stencila.article({ id, @@ -1505,7 +1511,7 @@ export function decodeReference( identifiers, url, meta: { - ...meta, + ...(metaEntries ? { ...metaEntries } : {}), ...(publicationType ? { publicationType, diff --git a/src/codecs/jats/jats.test.ts b/src/codecs/jats/jats.test.ts index a93a35fda..b29504af6 100644 --- a/src/codecs/jats/jats.test.ts +++ b/src/codecs/jats/jats.test.ts @@ -188,6 +188,7 @@ test.each([ }, meta: { publicationType: 'journal', + yearPublished: '2020', }, pageStart: 21, title: 'Deferasirox-Dependent Iron Chelation Enhances Mitochondrial Dysfunction and Restores p53 Signaling by Stabilization of p53 Family Members in Leukemic Cells', @@ -228,7 +229,8 @@ test.each([ value: "2019" }, meta: { - publicationType: "other" + publicationType: "other", + yearPublished: '2019', }, title: "YfmK is a Novel Nε-lysine Acetyltransferase that Directly Acetylates the Histone-like Protein HBsu in Bacillus Subtilis", type: "Article" @@ -240,6 +242,30 @@ test.each([ expect(decodeReference(citation, null, undefined)).toEqual(expected) }) +test('decode: reference datePublished is added to meta.yearPublished to preserve suffixes', () => { + const reference = ` + + Calabrese C, Panuzzo C et al (2020a) Deferasirox-Dependent Iron Chelation Enhances Mitochondrial Dysfunction and Restores p53 Signaling by Stabilization of p53 Family Members in Leukemic Cells. International journal of molecular sciences 21 + + ` + const citation = xml.load(reference).elements?.[0]! + + const result = decodeReference(citation, null, undefined); + expect(result.meta?.yearPublished).toEqual('2020a'); +}); + +test('decode: reference n.d. is parsed out of date published', () => { + const reference = ` + + Calabrese C, Panuzzo C et al (n.d.) Deferasirox-Dependent Iron Chelation Enhances Mitochondrial Dysfunction and Restores p53 Signaling by Stabilization of p53 Family Members in Leukemic Cells. International journal of molecular sciences 21 + + ` + const citation = xml.load(reference).elements?.[0]! + + const result = decodeReference(citation, null, undefined); + expect(result.meta?.yearPublished).toEqual('n.d.'); +}); + test('decode: element that has more than one ', () => { const fig = xml.load(`