Cargo.toml

[package]
name = "chainfile"
authors = ["St. Jude Rust Labs"]
version = "0.3.0"
description = "A crate for working with genomics chain files."
license = "Apache-2.0/MIT"
homepage = "https://github.com/stjude-rust-labs/chainfile"
repository = "https://github.com/stjude-rust-labs/chainfile"
documentation = "https://docs.rs/chainfile"
edition = "2021"
rust-version = "1.80.0"

[dependencies]
omics = { version = "0.2.0", features = ["coordinate", "position-u64"] }
anyhow = { version = "1.0.89", optional = true }
clap = { version = "4.5.20", features = ["derive"], optional = true }
clap-verbosity-flag = { version = "2.2.2", optional = true }
flate2 = "1.0.25"
nonempty = "0.9.0"
rand = { version = "0.8.5", optional = true }
regex = "1.11.1"
reqwest = { version = "0.12.12", features = ["blocking"], optional = true }
rust-lapper = "1.1.0"
tempdir = { version = "0.3.7", optional = true }
tracing = { version = "0.1.40", optional = true }
tracing-log = "0.2.0"
tracing-subscriber = { version = "0.3.18", features = [
    "env-filter",
], optional = true }
weighted_rand = { version = "0.4.2", optional = true }

[dev-dependencies]
noodles = { version = "0.87.0", features = ["core", "fasta"] }
tabled = { version = "0.16.0" }

[features]
default = []
binaries = [
    "dep:anyhow",
    "dep:clap",
    "dep:clap-verbosity-flag",
    "dep:rand",
    "dep:reqwest",
    "dep:tempdir",
    "dep:tracing",
    "dep:tracing-subscriber",
    "dep:weighted_rand",
]

[[bin]]
name = "compare-crossmap"
required-features = ["binaries"]