From 69f1ab8066cffff5f53febeed1ef8a0c34a0ff47 Mon Sep 17 00:00:00 2001
From: Andrew Thrasher <adthrasher@gmail.com>
Date: Tue, 14 Sep 2021 13:37:26 -0400
Subject: [PATCH] Add jq comamnd to update Docker version in CWL (#80)

---
 .github/workflows/cgc.yml | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/.github/workflows/cgc.yml b/.github/workflows/cgc.yml
index de9a421..d97f32f 100644
--- a/.github/workflows/cgc.yml
+++ b/.github/workflows/cgc.yml
@@ -8,6 +8,15 @@ jobs:
     name: "Deploy"
     steps:
       - uses: actions/checkout@v2
+      - name: Set the docker tag from Repo Tag
+        id: set_dockertag
+        env:
+          IMAGE: cgc-images.sbgenomics.com/stjude/cicero
+          VERSION_TAG: ${{ github.event.release.tag_name }}
+        run: |
+          jq --arg image "${{ env.IMAGE }}:${{ env.VERSION_TAG }}" '(.requirements | .[] | select(.class == ("DockerRequirement")) | .dockerPull) |= $image' cgc/cicero.cwl > cgc/cicero.cwl.new
+          mv cgc/cicero.cwl.new cgc/cicero.cwl
+          cat cgc/cicero.cwl
       - id: cgcdeploy
         uses: jordan-rash/cgc-go@v0.1.4
         with: