In this Superposition tool, the proper superimposition of the three-dimensional in form of the PDB co-crystal structure will be used. The overlay template can be the in the smiles form with dummy symbol[*].
install library eigen(for ubuntu)
apt install -y libeigen3-dev
for centOS
sudo yum -y install eigen3-devel
compilation example seeing compile.sh, also you can directly use the complied binary molsuperpos
bash compile.sh
running the bash script run.sh
bash run.sh