diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml index fa4a5c9..6f163c3 100644 --- a/.github/workflows/main.yaml +++ b/.github/workflows/main.yaml @@ -12,7 +12,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout with submodules - uses: actions/checkout@v3 + uses: actions/checkout@v4 with: submodules: recursive fetch-depth: 0 @@ -25,7 +25,7 @@ jobs: linting: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - name: Linting uses: snakemake/snakemake-github-action@v1.25.1 with: @@ -40,7 +40,7 @@ jobs: - formatting steps: - name: Checkout repository with submodules - uses: actions/checkout@v3 + uses: actions/checkout@v4 with: submodules: recursive - name: Test workflow @@ -48,10 +48,10 @@ jobs: with: directory: .test snakefile: workflow/Snakefile - args: "--use-conda --show-failed-logs --cores 2 --conda-cleanup-pkgs cache" - # - name: Test report - # uses: snakemake/snakemake-github-action@v1.25.1 - # with: - # directory: .test - # snakefile: workflow/Snakefile - # args: "--use-conda --cores 2 --report report.zip" \ No newline at end of file + args: "--software-deployment-method conda --show-failed-logs --cores 2 --conda-cleanup-pkgs cache" + - name: Test report + uses: snakemake/snakemake-github-action@v1.25.1 + with: + directory: .test + snakefile: workflow/Snakefile + args: "--software-deployment-method conda --cores 2 --report report.zip" \ No newline at end of file