From 176a73b3f59366e47b05d579b08e45a699fdb555 Mon Sep 17 00:00:00 2001
From: tdayris <thibault.dayris@gustaveroussy.fr>
Date: Mon, 10 Jun 2024 11:53:59 +0200
Subject: [PATCH] Blacklist fixes

---
 CHANGELOG.md                                | 4 ++++
 workflow/rules/bedtools_merge_blacklist.smk | 2 +-
 2 files changed, 5 insertions(+), 1 deletion(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 444f6b2..ef6df46 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -4,6 +4,10 @@
 
 * Documentation udpate
 
+## Fix:
+
+* blacklist merge fixed
+
 # 3.6.0
 
 ## Features:
diff --git a/workflow/rules/bedtools_merge_blacklist.smk b/workflow/rules/bedtools_merge_blacklist.smk
index a54c15a..b487ab8 100644
--- a/workflow/rules/bedtools_merge_blacklist.smk
+++ b/workflow/rules/bedtools_merge_blacklist.smk
@@ -14,7 +14,7 @@ rule fair_genome_indexer_bedtools_merge_blacklist:
     input:
         "tmp/fair_genome_indexer_blacklist/{species}.{build}.{release}.bed.gz",
     output:
-        "reference/blacklist/{species}.{build}.{release}.merged.bed",
+        "reference/blacklist/{species}.{build}.{release}/{species}.{build}.{release}.merged.bed",
     threads: 2
     resources:
         mem_mb=lambda wildcards, attempt: 450 + (150 * attempt),