A quick question about figure presentation

[HelloWorldLTY]

Hi, thanks for your great work. I am interested in one plot (panel D) in your Figure 4.

It seems that there are two types of spots (dots), but I can only observe one type (diseased). Did I miss anything? Thanks.

[AnnaChristina]

Hi @HelloWorldLTY,

thanks for you questions. Let me elaborate a bit more on this.

Figure 4D shows a spatial plot of all cells in the tissue section of the Xenium healthy lung (left) and the lung cancer section (right). We color both sections with the same hue, which resembles the neighborhood density, meaning that denser tissue regions will be shown in orange, whereas less dense regions will be in grey. Same hold for Figure 4E.

Does this explain your questions?

[HelloWorldLTY]

Thanks a lot. Does this mean we do not need to take care of healthy cells after aggregrating? Because there seems still no blue cells.