From 4c80801845f982928d4910b8f829191437745e9e Mon Sep 17 00:00:00 2001 From: Gertjan Bisschop Date: Wed, 6 Dec 2023 13:01:36 +0000 Subject: [PATCH] remove tests/data --- .../data/hdf5-formats/msprime-0.3.0_v2.0.hdf5 | Bin 29304 -> 0 bytes .../data/hdf5-formats/msprime-0.4.0_v3.1.hdf5 | Bin 43560 -> 0 bytes .../hdf5-formats/msprime-0.5.0_v10.0.hdf5 | Bin 69736 -> 0 bytes tests/data/simplify-bugs/01-edges.txt | 24 -- tests/data/simplify-bugs/01-mutations.txt | 1 - tests/data/simplify-bugs/01-nodes.txt | 18 - tests/data/simplify-bugs/01-sites.txt | 1 - tests/data/simplify-bugs/02-edges.txt | 378 ------------------ tests/data/simplify-bugs/02-mutations.txt | 1 - tests/data/simplify-bugs/02-nodes.txt | 218 ---------- tests/data/simplify-bugs/02-sites.txt | 1 - tests/data/simplify-bugs/03-edges.txt | 16 - tests/data/simplify-bugs/03-mutations.txt | 14 - tests/data/simplify-bugs/03-nodes.txt | 62 --- tests/data/simplify-bugs/03-sites.txt | 11 - tests/data/simplify-bugs/04-edges.txt | 14 - tests/data/simplify-bugs/04-mutations.txt | 1 - tests/data/simplify-bugs/04-nodes.txt | 17 - tests/data/simplify-bugs/04-sites.txt | 1 - tests/data/simplify-bugs/05-edges.txt | 13 - tests/data/simplify-bugs/05-mutations.txt | 1 - tests/data/simplify-bugs/05-nodes.txt | 14 - tests/data/simplify-bugs/05-sites.txt | 1 - 23 files changed, 807 deletions(-) delete mode 100644 tests/data/hdf5-formats/msprime-0.3.0_v2.0.hdf5 delete mode 100644 tests/data/hdf5-formats/msprime-0.4.0_v3.1.hdf5 delete mode 100644 tests/data/hdf5-formats/msprime-0.5.0_v10.0.hdf5 delete mode 100644 tests/data/simplify-bugs/01-edges.txt delete mode 100644 tests/data/simplify-bugs/01-mutations.txt delete mode 100644 tests/data/simplify-bugs/01-nodes.txt delete mode 100644 tests/data/simplify-bugs/01-sites.txt delete mode 100644 tests/data/simplify-bugs/02-edges.txt delete mode 100644 tests/data/simplify-bugs/02-mutations.txt delete mode 100644 tests/data/simplify-bugs/02-nodes.txt delete mode 100644 tests/data/simplify-bugs/02-sites.txt delete mode 100644 tests/data/simplify-bugs/03-edges.txt delete mode 100644 tests/data/simplify-bugs/03-mutations.txt delete mode 100644 tests/data/simplify-bugs/03-nodes.txt delete mode 100644 tests/data/simplify-bugs/03-sites.txt delete mode 100644 tests/data/simplify-bugs/04-edges.txt delete mode 100644 tests/data/simplify-bugs/04-mutations.txt delete mode 100644 tests/data/simplify-bugs/04-nodes.txt delete mode 100644 tests/data/simplify-bugs/04-sites.txt delete mode 100644 tests/data/simplify-bugs/05-edges.txt delete mode 100644 tests/data/simplify-bugs/05-mutations.txt delete mode 100644 tests/data/simplify-bugs/05-nodes.txt delete mode 100644 tests/data/simplify-bugs/05-sites.txt diff --git a/tests/data/hdf5-formats/msprime-0.3.0_v2.0.hdf5 b/tests/data/hdf5-formats/msprime-0.3.0_v2.0.hdf5 deleted file mode 100644 index 6e294ac5bdf74d52e04e00a0b2cbcb086793ee90..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 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100644 index 3f12d4059..000000000 --- a/tests/data/simplify-bugs/01-sites.txt +++ /dev/null @@ -1 +0,0 @@ -position ancestral_state diff --git a/tests/data/simplify-bugs/02-edges.txt b/tests/data/simplify-bugs/02-edges.txt deleted file mode 100644 index 8ddd2fddc..000000000 --- a/tests/data/simplify-bugs/02-edges.txt +++ /dev/null @@ -1,378 +0,0 @@ -left right parent child -63.824647 100.000000 100 47,85 -41.913156 100.000000 101 81,83 -0.000000 100.000000 102 88,98 -0.000000 76.111147 103 38,76 -0.000000 100.000000 104 12,63 -0.000000 100.000000 105 3,79 -0.000000 100.000000 106 23,95 -0.000000 100.000000 107 46,61 -0.000000 63.824647 108 47,87 -0.000000 41.913156 109 19,81 -41.913156 100.000000 109 19,101 -65.841615 100.000000 110 62,68 -0.000000 42.476761 111 59,72 -0.000000 79.893379 112 65,92 -0.000000 100.000000 113 60,107 -38.209860 53.470013 114 15,86 -99.748128 100.000000 115 30,96 -86.643371 95.255452 116 51,54 -0.000000 100.000000 117 2,21 -95.255452 100.000000 118 49,51 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0,1,6,10,11,15,26,28,29,34,36,37,39,40,44,48,50,51,53,54,58,64,68,80,83,86,93,99,102,106,108,112,123,124,125,127,130,132,148,154,165,167,174,186,199,200,205,208,210,213 -1.397707 3.475795 216 0,1,6,10,11,15,26,28,29,34,36,39,40,44,48,50,51,53,54,58,64,68,80,83,86,93,99,102,106,108,112,123,124,125,127,130,132,148,154,165,167,174,186,199,200,205,208,210,213 -3.475795 3.568615 216 0,1,6,10,11,15,16,26,28,29,34,36,39,40,44,48,50,51,53,54,58,64,68,69,80,83,86,93,99,102,106,108,112,123,124,125,127,130,132,148,154,165,167,174,186,199,205,208,210,213 -3.568615 4.419653 216 0,1,6,10,11,15,16,26,28,29,34,36,39,40,44,48,50,51,53,54,58,64,68,69,80,83,86,93,99,102,106,112,123,124,125,127,130,132,148,154,165,167,174,186,199,205,208,210,213 -4.419653 4.851737 216 0,1,6,10,11,15,16,26,28,29,34,36,39,40,44,48,50,51,53,54,58,68,69,80,83,86,93,99,102,106,112,123,124,125,127,130,132,148,154,165,167,174,186,199,205,208,210,213 -4.851737 6.538844 216 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0,1,4,6,10,11,15,16,26,28,29,36,39,40,41,44,48,50,51,52,53,54,58,68,80,83,85,86,93,99,102,103,106,123,124,125,132,148,154,165,167,169,170,174,186,199,205,208,210 -14.560625 15.750456 216 0,1,4,6,10,11,15,16,26,28,29,36,39,40,41,44,48,50,51,52,53,54,58,68,80,83,85,86,93,99,103,106,123,124,125,132,148,154,165,167,169,170,174,186,199,205,208,210 -15.750456 16.128261 216 0,1,4,6,10,11,15,16,26,28,29,36,39,40,41,44,48,50,51,52,53,54,58,68,80,83,85,86,93,99,102,103,106,123,124,125,132,148,154,165,167,169,170,174,186,199,205,208,210 -16.128261 16.654066 216 0,1,4,6,10,11,15,16,26,28,29,36,39,40,41,44,48,50,51,52,53,54,55,58,68,80,83,85,93,99,102,103,106,123,124,125,132,151,154,165,167,169,170,174,186,199,205,208,210 -16.654066 18.000399 216 0,1,4,6,10,11,15,16,26,28,29,36,39,40,41,44,48,50,51,52,53,54,58,80,83,85,93,99,102,103,106,123,124,125,132,151,154,165,167,169,170,174,186,196,199,205,208,210 -18.000399 19.401604 216 0,1,4,6,10,11,13,15,16,26,28,29,36,39,40,41,44,48,50,51,52,53,54,58,80,83,85,93,99,102,103,106,123,124,125,132,151,154,162,165,167,170,174,186,196,199,205,208,210 -19.401604 19.497026 216 1,4,6,10,11,13,15,16,26,28,29,36,39,40,41,44,48,50,51,52,53,54,58,80,83,85,93,99,102,103,106,123,124,125,132,151,153,154,159,162,167,170,174,186,196,199,205,208,210 -19.497026 20.449369 216 1,4,6,10,11,13,15,16,26,28,29,36,39,40,41,44,48,50,51,52,53,54,58,73,80,83,85,93,99,102,103,106,123,124,125,132,138,151,153,154,159,162,167,170,174,186,196,205,208,210 -20.449369 20.575506 216 1,4,6,10,11,13,15,16,24,26,28,29,36,39,40,41,44,48,50,51,52,53,54,58,73,80,83,85,93,99,102,103,106,123,124,125,132,138,151,153,154,159,162,167,170,174,186,196,205,208,210 -20.575506 20.721380 216 1,4,6,10,11,13,15,16,24,26,28,29,36,39,40,41,44,48,50,51,52,53,54,58,73,80,83,85,93,94,99,102,103,106,123,124,125,132,138,151,153,154,159,162,167,170,174,186,196,205,208,210 -20.721380 20.956228 216 1,4,6,10,11,13,15,16,24,26,28,29,36,39,40,41,48,50,51,52,53,54,58,69,73,80,83,85,93,94,99,102,103,106,123,124,125,132,138,151,153,154,159,162,167,174,186,196,198,205,208,210 -20.956228 21.440137 216 1,4,6,10,11,13,15,16,24,26,28,29,36,39,40,41,48,50,51,52,53,54,58,69,73,82,83,85,93,94,99,102,103,106,123,124,125,132,138,153,154,159,162,166,167,174,186,196,198,205,208,210 -21.440137 22.327425 216 1,6,10,11,13,15,16,24,26,28,29,32,36,39,40,41,48,50,51,52,53,54,58,69,73,82,83,85,93,94,99,102,103,106,123,124,125,132,138,153,154,162,166,167,172,174,186,196,198,205,208,210 -22.327425 22.902252 216 1,6,10,11,13,15,16,24,26,28,29,32,36,39,40,41,48,50,51,52,53,54,58,69,73,82,83,85,93,94,96,99,102,103,105,106,123,124,125,132,138,153,154,162,166,167,172,186,196,198,205,208,210 -22.902252 23.051339 216 1,6,10,11,15,16,24,26,28,29,32,36,39,40,41,48,50,51,52,53,54,58,69,73,82,83,85,93,94,96,99,102,103,105,106,123,124,125,132,138,153,154,162,166,167,172,184,186,196,198,205,208,210 -23.051339 23.120737 216 1,10,11,15,16,24,26,28,29,32,36,39,40,41,48,50,51,52,53,54,58,69,73,82,83,85,93,94,96,99,102,103,106,123,124,125,132,138,153,154,158,162,166,167,172,184,186,196,198,205,208,210 -23.120737 23.444517 216 1,10,11,15,16,24,26,28,29,32,36,39,40,41,48,50,51,52,53,54,58,69,73,83,85,93,94,96,99,102,103,106,123,124,125,132,138,153,154,158,162,166,167,172,184,186,196,198,205,208,210 -23.444517 23.725869 216 1,10,11,15,16,24,26,28,29,32,35,36,39,40,41,48,50,51,52,53,54,58,69,73,83,85,94,96,99,102,103,106,123,124,125,132,138,153,158,162,166,167,171,172,184,186,196,198,205,208,210 -23.725869 24.710938 216 1,10,11,15,16,24,26,27,28,29,32,35,36,39,40,41,48,50,51,52,53,54,58,69,73,83,85,94,96,99,102,103,106,123,124,125,132,138,153,158,162,166,167,171,172,184,186,189,196,198,208,210 -24.710938 25.328103 216 1,10,11,15,16,24,26,27,28,29,32,35,36,39,40,41,48,50,51,52,53,54,58,69,73,83,84,85,94,96,99,102,103,106,123,124,125,132,138,153,158,162,166,167,171,172,184,186,189,196,198,208 -25.328103 25.474716 216 1,10,11,15,16,24,26,27,28,29,32,35,36,39,40,41,48,50,51,52,53,54,58,69,73,83,84,85,94,96,99,102,103,106,123,124,125,132,153,158,162,166,167,171,172,184,186,189,196,198,208 -25.474716 25.584357 216 1,10,11,15,16,24,26,27,28,29,32,35,36,39,40,41,48,50,52,53,54,58,69,73,83,84,85,94,99,102,103,106,123,124,125,132,146,153,158,162,166,167,171,172,184,186,189,196,198,208 -25.584357 26.281985 216 1,10,11,15,16,24,26,27,28,29,32,35,36,39,40,41,48,50,51,52,53,54,58,69,73,83,84,85,94,96,99,102,103,106,123,124,125,132,153,158,162,166,167,171,172,184,186,189,196,198,208 -26.281985 27.039936 216 1,10,11,15,16,24,26,27,28,29,32,35,36,39,40,41,48,50,51,52,53,58,69,73,83,84,85,94,96,99,102,103,106,123,125,132,153,158,162,166,167,171,172,175,184,186,189,196,198,208 -27.039936 27.114357 216 1,10,11,15,16,26,27,28,29,32,35,36,39,40,41,48,50,51,52,53,58,69,73,83,84,85,94,96,99,102,103,106,123,125,132,153,158,162,166,167,171,172,175,184,186,189,196,198,208 -27.114357 27.368300 216 10,11,15,16,26,27,28,29,32,35,36,39,40,41,48,50,51,52,53,58,69,73,83,84,85,94,96,99,102,103,106,123,125,132,153,158,162,166,167,171,172,175,184,186,189,196,198,208 -27.368300 27.631858 216 10,11,15,16,26,27,28,29,32,35,36,39,40,41,48,50,51,52,53,58,69,73,83,84,85,96,99,102,103,106,121,123,125,132,153,158,162,166,167,171,172,175,184,186,189,196,198,208 -27.631858 30.422602 216 10,11,15,16,22,26,27,28,29,32,35,36,39,40,41,48,50,51,52,53,58,69,73,83,84,85,96,99,102,103,106,121,123,125,132,153,158,162,166,167,171,172,175,184,186,189,196,198,208 -30.422602 30.600251 216 10,11,15,16,22,25,26,27,28,29,32,35,36,39,41,48,50,51,52,53,58,69,73,83,84,85,96,99,102,103,106,121,123,125,126,132,153,158,162,166,167,171,172,175,184,186,196,198,208 -30.600251 30.811847 216 0,10,11,15,16,22,25,26,27,28,29,32,35,36,39,41,48,51,52,53,58,69,73,83,84,85,96,99,102,103,106,121,123,125,126,132,153,158,162,166,167,171,175,178,184,186,196,198,208 -30.811847 31.693641 216 0,11,15,16,22,25,26,27,28,29,32,35,36,39,41,48,51,52,53,58,69,73,83,84,85,96,99,102,103,106,121,123,125,126,132,137,153,158,166,167,171,175,178,184,186,196,198,201,208 -31.693641 32.070756 216 0,11,16,22,25,26,27,28,29,32,35,36,39,41,48,51,52,53,58,69,73,83,84,85,96,99,102,103,106,121,123,125,126,132,137,153,158,166,167,171,175,178,184,186,193,194,198,201,208 -32.070756 32.637756 216 0,11,16,22,25,26,27,28,29,32,35,36,39,41,48,51,52,53,58,69,73,83,84,96,99,102,103,106,121,123,125,126,132,137,153,158,167,171,175,176,178,184,186,193,194,198,201,208 -32.637756 33.673379 216 0,11,16,22,25,26,27,28,29,32,35,36,39,41,48,51,52,53,58,69,73,83,84,96,99,102,103,106,121,123,124,125,126,132,137,153,158,167,171,176,178,184,186,193,194,198,201,208 -33.673379 34.067864 216 0,11,16,22,25,26,27,28,29,32,35,36,39,41,48,51,52,53,54,58,69,73,83,84,96,99,102,103,106,121,123,124,125,126,132,137,153,158,167,171,176,178,184,186,193,194,198,201,208 -34.067864 34.233492 216 0,11,16,22,25,26,27,28,29,32,35,36,39,41,48,51,52,53,54,58,69,73,83,84,96,99,102,103,106,121,123,124,125,126,132,153,158,167,171,176,178,185,186,193,194,198,201,208 -34.233492 34.240481 216 0,11,22,25,26,27,28,29,32,35,36,39,41,48,51,52,53,54,58,69,73,83,84,96,99,103,106,121,123,124,125,126,132,153,158,167,171,176,178,185,186,193,194,198,201,208,211 -34.240481 35.877983 216 0,11,22,25,26,27,28,32,35,36,39,41,48,51,52,53,54,58,69,73,83,84,96,99,103,106,121,123,124,125,126,132,153,158,167,171,176,178,185,186,193,194,198,201,208,211 -35.877983 36.134011 216 0,11,16,22,25,26,27,28,32,35,36,39,41,48,51,52,53,54,58,69,73,83,84,96,99,102,103,106,121,123,124,125,126,132,153,158,167,171,176,178,185,186,193,194,198,201,208 -36.134011 36.777478 216 0,11,16,22,25,26,27,28,32,35,36,39,41,48,51,52,53,54,58,69,73,83,84,96,99,102,103,106,121,123,124,125,132,153,158,167,171,176,178,185,186,193,194,198,201,208 -36.777478 37.043091 216 0,10,11,16,22,25,26,27,28,32,35,36,37,39,41,48,51,52,53,54,58,69,73,83,84,96,99,102,103,106,121,123,124,125,132,153,158,167,171,176,178,185,186,193,194,198,208 -37.043091 37.135096 216 0,10,11,16,22,25,26,27,28,32,35,36,37,39,41,48,51,52,53,54,58,69,73,78,83,84,96,99,102,103,106,121,123,124,125,132,153,158,171,176,178,185,186,193,194,198,208 -37.135096 38.269459 216 0,10,11,16,22,25,26,27,28,32,35,36,37,39,41,48,51,52,53,54,58,69,73,78,83,84,96,99,102,106,121,123,124,125,153,158,171,176,177,178,185,186,193,194,198,208 -38.269459 38.778292 216 0,6,10,11,16,22,25,26,27,28,32,35,36,37,39,41,48,51,52,53,54,58,69,73,78,83,84,96,99,102,105,106,121,123,124,125,153,171,176,177,178,185,186,193,194,198,208 -38.778292 39.199376 216 0,6,10,11,16,22,25,26,27,28,32,35,36,37,39,41,48,51,52,53,54,58,68,69,73,83,84,96,99,102,105,106,121,123,124,125,153,171,176,177,178,185,186,193,198,208,214 -39.199376 39.263142 216 0,6,10,11,16,22,25,26,27,28,32,35,36,37,39,41,48,51,52,53,54,68,69,73,83,84,96,99,102,105,106,121,123,124,125,153,171,176,177,178,185,186,193,198,208,214 -39.263142 39.656727 216 0,6,10,11,16,22,25,26,27,32,35,36,37,39,41,48,51,52,53,68,69,73,83,84,96,99,102,105,106,121,123,124,125,153,171,176,177,178,185,186,193,198,208,209,214 -39.656727 41.362197 216 0,4,6,10,11,16,22,25,26,27,32,35,36,37,39,41,48,51,52,53,68,69,73,83,84,96,99,102,105,106,121,123,124,153,171,176,177,181,185,186,193,198,208,209,214 -41.362197 41.913156 216 0,4,6,10,11,16,22,25,26,27,32,35,36,37,39,41,48,51,52,53,68,69,73,83,84,96,99,102,105,106,121,123,124,153,176,177,181,185,186,193,198,208,209,214 -41.913156 42.751756 216 0,4,6,10,11,16,22,25,26,27,32,35,36,37,39,41,48,51,52,53,68,69,73,84,96,99,102,105,106,121,123,124,153,176,177,181,185,186,193,198,208,209,214 -42.751756 43.757852 216 0,4,6,10,11,16,22,25,26,27,32,35,36,37,39,41,48,51,52,53,68,69,73,84,96,99,102,105,106,123,124,153,176,177,181,185,186,193,198,208,209,214 -43.757852 44.698548 216 0,4,6,10,11,16,22,26,27,32,35,36,37,39,41,48,51,52,53,68,69,73,82,84,96,99,102,105,106,123,124,153,176,177,181,185,186,189,198,208,209,214 -44.698548 45.405170 216 0,4,6,10,16,22,26,27,32,35,36,37,39,41,48,51,52,53,68,69,73,82,84,96,99,102,105,106,123,124,153,176,177,181,185,186,189,198,208,209,214 -45.405170 45.914485 216 0,4,6,10,16,22,26,27,32,35,36,37,39,41,48,51,52,53,55,68,69,73,82,84,96,99,102,105,106,123,124,153,176,177,181,185,186,189,198,208,209,214 -45.914485 46.386608 216 0,4,6,10,16,22,26,27,32,35,36,37,39,41,48,51,52,53,55,68,69,73,82,84,96,102,105,106,123,124,153,168,176,177,181,185,186,189,198,208,209,214 -46.386608 46.492800 216 0,4,6,9,10,16,22,26,27,32,35,36,37,39,41,48,51,52,53,55,68,69,73,82,84,96,102,105,106,124,153,168,176,177,181,185,186,189,198,208,209,214 -46.492800 46.891849 216 0,4,6,10,16,22,26,27,32,35,36,37,39,41,48,51,52,53,55,68,69,73,82,84,96,102,105,106,124,153,168,176,177,181,185,186,189,198,208,209,214 -46.891849 47.640188 216 0,4,6,10,16,22,26,27,32,35,36,37,39,41,48,51,52,53,55,68,69,70,73,82,84,96,102,105,106,124,153,168,176,177,181,185,186,189,198,207,209,214 -47.640188 49.108935 216 0,4,6,10,16,22,26,27,32,35,36,37,39,41,48,51,52,53,55,68,69,70,73,77,82,84,96,102,105,106,124,153,168,176,177,181,185,186,189,198,207,209,214 -49.108935 50.484324 216 0,4,6,10,16,22,26,27,32,35,36,37,39,41,48,51,52,53,55,58,59,68,69,70,73,77,82,84,96,102,105,106,124,153,168,176,177,181,185,186,189,198,209,214 -50.484324 50.640219 216 4,6,10,16,22,26,27,32,35,36,37,39,41,48,51,52,53,55,58,59,68,69,70,73,77,82,84,96,102,105,106,124,153,155,168,176,177,181,185,186,189,198,209,214 -50.640219 51.344527 216 4,6,10,16,22,26,27,32,35,36,37,39,41,48,51,52,55,58,68,69,70,73,77,82,84,96,102,105,106,124,153,155,164,168,176,177,181,185,186,189,198,209,214 -51.344527 51.451422 216 4,6,10,16,17,22,26,27,32,35,36,37,39,41,48,51,52,55,58,68,69,70,73,77,82,84,96,102,105,106,124,153,155,164,168,176,177,181,185,186,189,198,209,214 -51.451422 51.690836 216 4,6,10,16,17,22,26,27,32,35,36,37,39,41,48,51,55,58,68,69,70,73,77,82,84,96,102,105,106,124,128,153,155,164,168,176,177,181,185,186,189,198,209,214 -51.690836 51.803381 216 4,6,10,16,17,22,26,27,30,32,35,36,37,39,41,48,51,55,58,68,69,70,73,77,82,84,96,102,105,106,124,128,153,155,164,168,176,177,181,184,186,189,198,209,214 -51.803381 52.173268 216 4,6,10,16,17,22,26,27,30,32,35,36,37,39,41,48,51,55,58,68,69,70,73,77,82,96,102,105,106,120,124,128,153,155,164,168,177,181,184,186,189,198,202,209,214 -52.173268 54.284561 216 0,4,6,10,16,17,22,26,27,30,32,35,36,37,39,41,48,51,55,58,68,69,70,73,77,82,96,102,105,106,120,124,128,153,164,168,177,181,184,186,189,198,202,209,214 -54.284561 54.414499 216 0,4,6,10,16,17,22,26,27,30,32,35,36,37,39,41,48,51,55,58,68,69,70,73,77,82,96,102,105,106,124,128,153,164,166,168,177,181,184,186,189,198,202,209,214 -54.414499 54.775535 216 0,4,6,10,16,17,22,26,27,30,32,35,36,37,39,41,48,51,55,58,68,69,70,71,73,77,82,96,102,105,106,124,128,153,164,166,168,177,181,184,186,189,198,202,209,214 -54.775535 55.451624 216 0,4,6,10,16,17,22,26,27,30,32,35,36,37,39,41,48,51,55,58,68,69,70,71,73,77,82,96,102,105,106,124,128,145,153,164,166,177,181,184,186,189,198,202,209,214 -55.451624 57.108058 216 0,4,6,10,16,17,22,26,27,30,32,35,36,37,39,41,48,51,55,58,68,69,70,71,73,77,82,96,102,106,124,128,145,153,164,166,177,181,184,186,189,198,202,209,214 -57.108058 58.916166 216 0,4,6,10,16,17,22,26,27,30,32,35,36,37,39,41,48,51,55,58,68,69,70,71,73,77,82,96,102,106,124,128,145,166,177,181,184,186,189,192,198,202,209,214 -58.916166 60.658379 216 0,4,6,10,16,17,22,26,27,29,30,32,35,36,37,39,41,48,51,55,58,68,69,70,71,73,77,82,96,102,106,124,128,145,166,177,181,184,186,189,192,198,202,209,214 -60.658379 60.905848 216 0,4,6,10,16,17,22,26,27,29,30,32,35,36,37,39,41,48,50,51,55,58,68,69,70,71,73,77,82,96,102,106,124,128,145,166,177,184,186,189,192,198,202,209,214 -60.905848 61.095745 216 0,4,6,10,16,17,22,26,27,29,30,32,35,36,37,39,41,48,50,51,55,58,68,69,70,71,73,77,82,93,96,102,106,124,128,145,166,177,184,186,189,192,198,202,209,214 -61.095745 61.719977 216 0,4,10,16,17,22,26,27,29,30,32,35,36,37,39,41,48,50,51,55,58,68,69,70,71,73,77,82,93,96,102,106,124,128,145,166,184,186,189,192,198,202,206,209,214 -61.719977 62.308779 216 0,4,10,16,17,22,26,27,29,30,32,35,36,37,39,41,48,50,51,55,58,64,68,69,70,71,73,77,82,93,96,99,102,106,124,128,166,184,186,189,192,198,202,206,209,214 -62.308779 62.577097 216 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0,8,10,14,15,16,17,22,28,29,30,32,34,35,36,37,39,44,48,50,51,54,55,58,64,69,70,71,73,77,82,102,106,128,129,132,133,140,141,159,166,195,197,202,206,215 -83.777115 84.317521 216 0,5,8,10,14,15,16,17,22,28,29,30,32,34,35,36,37,39,44,48,49,50,51,54,55,58,64,69,70,71,73,77,82,102,106,128,129,132,133,141,159,166,195,197,202,206,215 -84.317521 85.706099 216 0,5,8,10,14,15,16,17,22,28,29,30,32,34,35,36,37,39,44,48,49,50,51,54,55,58,64,69,70,71,73,77,82,102,106,128,129,132,133,141,150,159,166,195,197,202,206,215 -85.706099 85.951325 216 0,5,10,14,15,16,17,22,28,29,30,32,34,35,36,37,39,44,48,49,50,51,54,55,58,64,69,70,71,73,77,82,102,106,128,129,132,133,141,150,159,166,195,197,202,204,206,215 -85.951325 86.401076 216 0,5,10,14,15,16,17,22,28,29,30,32,34,35,36,37,44,48,49,50,51,54,55,58,64,69,70,71,73,77,82,102,106,128,129,132,133,141,150,159,166,195,197,202,204,206,215 -86.401076 86.643371 216 0,5,10,14,15,16,17,22,28,29,30,32,34,35,36,37,44,48,49,50,51,54,55,58,64,69,70,71,73,77,102,106,128,129,132,133,141,150,159,166,195,197,202,204,206,215 -86.643371 87.032912 216 0,5,10,14,15,16,17,22,28,29,30,32,34,35,36,37,44,48,49,50,55,58,64,69,70,71,73,77,102,106,116,128,129,132,133,141,150,159,166,195,197,202,204,206,215 -87.032912 88.701340 216 0,5,10,14,15,16,17,22,28,29,30,32,34,35,36,37,44,48,49,50,55,58,64,69,70,73,77,102,106,116,128,129,132,133,141,150,159,166,195,197,202,204,206,215 -88.701340 88.947794 216 0,5,10,14,15,16,17,22,28,29,30,32,34,35,36,37,44,48,50,55,58,64,69,70,73,77,102,116,128,129,132,133,141,147,150,159,166,195,197,202,204,206,215 -88.947794 89.826128 216 0,5,10,14,15,16,17,22,29,30,32,34,35,36,37,44,48,50,55,58,64,69,70,73,102,116,128,129,132,133,141,147,150,159,166,190,195,197,202,204,206,215 -89.826128 90.247778 216 0,5,10,14,15,16,17,22,25,29,30,32,34,35,36,37,44,48,50,55,58,64,69,70,73,102,116,128,129,132,133,141,147,150,159,166,190,195,197,202,204,206,215 -90.247778 92.349588 216 0,5,10,14,15,16,17,22,25,29,30,32,34,35,36,37,44,48,50,55,58,64,69,70,73,93,99,102,116,128,132,133,141,147,150,159,166,190,195,197,202,204,206,215 -92.349588 92.357754 216 0,5,10,14,15,16,17,22,25,29,30,32,34,35,36,37,44,48,50,55,58,64,69,70,73,93,99,102,113,116,128,132,133,141,147,150,159,166,190,195,197,202,204,206,215 -92.357754 92.895855 216 0,5,10,14,15,16,17,22,25,29,30,32,34,35,36,37,44,48,50,55,64,69,70,73,93,99,102,113,116,128,132,133,141,147,150,159,166,190,195,197,202,204,206,215 -92.895855 93.565018 216 0,5,10,14,15,16,17,22,25,29,30,32,34,35,36,37,44,48,50,55,69,70,73,93,99,102,113,116,128,132,133,141,147,150,159,166,190,195,197,202,204,206,215 -93.565018 93.764750 216 0,5,10,15,16,17,22,25,29,30,32,34,35,36,37,44,48,50,55,69,70,73,93,99,102,113,116,128,132,133,141,147,150,159,166,188,190,195,197,202,204,206,215 -93.764750 93.836844 216 0,5,10,15,16,17,22,25,29,30,32,34,35,36,37,44,48,50,55,66,69,70,73,93,99,102,113,116,128,132,133,141,147,150,159,166,188,190,195,197,202,204,206,215 -93.836844 94.444668 216 0,5,10,15,16,17,22,25,29,32,34,35,37,44,48,50,55,66,69,70,73,93,99,102,113,116,128,132,133,141,147,150,159,166,187,188,190,195,197,202,204,206,215 -94.444668 94.869872 216 0,5,10,15,16,17,22,25,29,32,34,35,37,44,48,50,55,66,69,70,73,84,93,99,100,102,113,116,128,132,133,141,147,150,159,166,187,188,190,195,197,204,206,215 -94.869872 94.899812 216 0,5,10,15,16,17,22,25,29,32,34,35,37,44,48,50,55,66,69,70,73,84,93,99,100,113,116,128,132,133,141,147,150,159,166,187,188,190,195,197,204,206,215 -94.899812 95.255452 216 0,5,10,14,15,16,17,22,25,29,32,34,35,37,44,48,50,55,66,69,70,73,84,90,93,99,100,113,116,128,132,133,141,147,150,159,166,187,190,195,197,204,206,215 -95.255452 95.899004 216 0,5,10,14,15,16,17,22,25,29,32,34,35,37,44,48,50,54,55,66,69,70,73,84,90,93,99,100,113,128,132,133,141,147,150,159,166,187,190,195,197,204,206,215 -95.899004 99.132998 216 0,5,10,14,15,16,17,22,25,26,27,29,32,34,35,37,44,48,50,54,55,66,69,70,73,84,90,93,99,100,113,128,132,133,141,147,150,159,166,187,190,195,204,206,215 -99.132998 99.468331 216 0,5,10,14,15,16,17,22,25,26,29,32,34,35,37,44,48,50,54,55,66,69,70,73,84,90,93,99,100,113,128,132,133,141,147,150,159,166,187,190,195,204,206,215 -99.468331 99.753960 216 0,4,5,10,14,15,16,17,22,25,26,29,32,34,35,37,44,48,50,54,55,66,69,70,73,84,90,93,99,100,113,128,132,133,141,147,150,159,166,186,187,190,195,204,206 -99.753960 100.000000 216 0,4,5,10,14,15,16,17,22,25,26,29,32,34,35,37,44,48,50,54,55,66,69,70,73,84,90,99,100,113,128,132,133,141,147,150,159,166,182,186,187,190,195,204,206 diff --git a/tests/data/simplify-bugs/02-mutations.txt b/tests/data/simplify-bugs/02-mutations.txt deleted file mode 100644 index 789b7b2e1..000000000 --- a/tests/data/simplify-bugs/02-mutations.txt +++ /dev/null @@ -1 +0,0 @@ -site node derived_state diff --git a/tests/data/simplify-bugs/02-nodes.txt b/tests/data/simplify-bugs/02-nodes.txt deleted file mode 100644 index f09836feb..000000000 --- a/tests/data/simplify-bugs/02-nodes.txt +++ /dev/null @@ -1,218 +0,0 @@ -is_sample time -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 0.000000 -1 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0.003640 -0 0.003920 -0 0.003996 -0 0.004180 -0 0.004187 -0 0.004326 -0 0.004453 -0 0.005014 -0 0.005035 -0 0.005512 -0 0.005679 -0 0.005842 -0 0.006024 -0 0.006182 -0 0.006282 -0 0.006540 -0 0.006850 -0 0.006989 -0 0.007400 -0 0.007440 -0 0.007559 -0 0.007880 -0 0.008043 -0 0.008337 -0 0.008406 -0 0.008968 -0 0.009216 -0 0.009236 -0 0.009300 -0 0.010000 -0 0.010592 -0 0.011448 -0 0.011471 -0 0.011991 -0 0.012237 -0 0.012290 -0 0.012429 -0 0.012484 -0 0.013078 -0 0.013189 -0 0.014031 -0 0.014208 -0 0.014449 -0 0.014731 -0 0.015388 -0 0.015556 -0 0.015588 -0 0.015727 -0 0.015773 -0 0.015945 -0 0.016374 -0 0.016542 -0 0.016560 -0 0.016713 -0 0.017029 -0 0.017180 -0 0.017280 -0 0.017546 -0 0.017637 -0 0.017806 -0 0.017943 -0 0.017983 -0 0.018078 -0 0.018319 -0 0.018490 -0 0.018598 -0 0.018688 -0 0.019008 -0 0.019012 -0 0.019112 -0 0.019190 -0 0.019191 -0 0.019477 -0 0.020000 -0 0.020659 -0 0.020952 -0 0.021267 -0 0.021289 -0 0.021641 -0 0.021823 -0 0.022321 -0 0.022553 -0 0.022602 -0 0.023120 -0 0.023233 -0 0.024210 -0 0.024342 -0 0.024893 -0 0.024922 -0 0.024934 -0 0.025736 -0 0.025806 -0 0.025938 -0 0.026345 -0 0.026486 -0 0.026561 -0 0.026877 -0 0.027657 -0 0.028587 -0 0.029557 -0 0.029563 -0 0.029588 -0 0.029963 -0 0.030000 diff --git a/tests/data/simplify-bugs/02-sites.txt b/tests/data/simplify-bugs/02-sites.txt deleted file mode 100644 index 3f12d4059..000000000 --- a/tests/data/simplify-bugs/02-sites.txt +++ /dev/null @@ -1 +0,0 @@ -position ancestral_state diff --git a/tests/data/simplify-bugs/03-edges.txt b/tests/data/simplify-bugs/03-edges.txt deleted file mode 100644 index 1a6181527..000000000 --- a/tests/data/simplify-bugs/03-edges.txt +++ /dev/null @@ -1,16 +0,0 @@ -left right parent child -0.000000 10000.000000 50 29,31 -0.000000 10000.000000 51 11,15 -0.000000 1554.123401 52 1,51 -1554.123401 10000.000000 52 1 -0.000000 1736.203571 53 52 -1736.203571 10000.000000 53 51,52 -0.000000 10000.000000 54 4,12,27,38,39,40 -0.000000 10000.000000 55 17,25,45,48,49,50 -0.000000 10000.000000 56 24,55 -0.000000 1554.123401 57 56 -1554.123401 1736.203571 57 51,56 -1736.203571 10000.000000 57 56 -0.000000 10000.000000 58 0,13,22,57 -0.000000 10000.000000 59 2,3,5,6,7,8,9,10,14,16,18,19,20,21,23,26,28,30,32,33,34,35,36,37,41,42,43,44,46,47,53,54,58 -0.000000 10000.000000 60 59 diff --git a/tests/data/simplify-bugs/03-mutations.txt b/tests/data/simplify-bugs/03-mutations.txt deleted file mode 100644 index 0fc3b2073..000000000 --- a/tests/data/simplify-bugs/03-mutations.txt +++ /dev/null @@ -1,14 +0,0 @@ -site node derived_state -0 52 1 -1 34 1 -2 57 1 -2 3 1 -3 58 1 -4 34 1 -5 56 1 -6 55 1 -6 1 1 -7 51 1 -8 43 1 -9 54 1 -9 0 1 diff --git a/tests/data/simplify-bugs/03-nodes.txt b/tests/data/simplify-bugs/03-nodes.txt deleted file mode 100644 index 93ab91666..000000000 --- a/tests/data/simplify-bugs/03-nodes.txt +++ /dev/null @@ -1,62 +0,0 @@ -is_sample time population -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -0 50.000000 -1 -0 51.000000 -1 -0 52.000000 -1 -0 53.000000 -1 -0 54.000000 -1 -0 55.000000 -1 -0 56.000000 -1 -0 57.000000 -1 -0 58.000000 -1 -0 59.000000 -1 -0 60.000000 -1 diff --git a/tests/data/simplify-bugs/03-sites.txt b/tests/data/simplify-bugs/03-sites.txt deleted file mode 100644 index bd2b03ebe..000000000 --- a/tests/data/simplify-bugs/03-sites.txt +++ /dev/null @@ -1,11 +0,0 @@ -position ancestral_state -284.252209 0 -1313.686815 0 -1554.123401 0 -1736.203571 0 -3310.290546 0 -4208.672558 0 -4995.288904 0 -5187.559857 0 -5211.162157 0 -5483.889413 0 diff --git a/tests/data/simplify-bugs/04-edges.txt b/tests/data/simplify-bugs/04-edges.txt deleted file mode 100644 index 1849beb94..000000000 --- a/tests/data/simplify-bugs/04-edges.txt +++ /dev/null @@ -1,14 +0,0 @@ -left right parent child -0.000000 0.500000 6 0,1 -0.500000 1.000000 6 4,5 -0.000000 0.400000 7 2,3 -0.000000 0.500000 8 4,5 -0.500000 1.000000 8 0,1 -0.400000 1.000000 9 2,3 -0.400000 1.000000 10 8,9 -0.000000 0.100000 13 6,14 -0.100000 0.400000 15 7,14 -0.000000 0.100000 11 7,13 -0.100000 0.400000 11 6,15 -0.000000 0.400000 12 8,11 -0.400000 1.000000 12 6,10 diff --git a/tests/data/simplify-bugs/04-mutations.txt b/tests/data/simplify-bugs/04-mutations.txt deleted file mode 100644 index 789b7b2e1..000000000 --- a/tests/data/simplify-bugs/04-mutations.txt +++ /dev/null @@ -1 +0,0 @@ -site node derived_state diff --git a/tests/data/simplify-bugs/04-nodes.txt b/tests/data/simplify-bugs/04-nodes.txt deleted file mode 100644 index 1154050df..000000000 --- a/tests/data/simplify-bugs/04-nodes.txt +++ /dev/null @@ -1,17 +0,0 @@ -is_sample time population -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -1 0.000000 -1 -0 1.000000 -1 -0 1.000000 -1 -0 1.000000 -1 -0 1.000000 -1 -0 2.000000 -1 -0 3.000000 -1 -0 4.000000 -1 -0 2.000000 -1 -0 1.000000 -1 -0 2.000000 -1 diff --git a/tests/data/simplify-bugs/04-sites.txt b/tests/data/simplify-bugs/04-sites.txt deleted file mode 100644 index 3f12d4059..000000000 --- a/tests/data/simplify-bugs/04-sites.txt +++ /dev/null @@ -1 +0,0 @@ -position ancestral_state diff --git a/tests/data/simplify-bugs/05-edges.txt b/tests/data/simplify-bugs/05-edges.txt deleted file mode 100644 index 96f2c53d1..000000000 --- a/tests/data/simplify-bugs/05-edges.txt +++ /dev/null @@ -1,13 +0,0 @@ -left right parent child -0.0 0.8 5 9 -0.3 1.0 5 10 -0.0 1.0 6 8 -0.0 0.3 6 10 -0.0 0.9 7 11 -0.0 1.0 7 12 -0.8 1.0 7 9 -0.9 1.0 1 11 -0.4 1.0 1 6 -0.0 0.4 4 6 -0.0 1.0 4 7 -0.0 1.0 0 1,2,4,5 diff --git a/tests/data/simplify-bugs/05-mutations.txt b/tests/data/simplify-bugs/05-mutations.txt deleted file mode 100644 index 789b7b2e1..000000000 --- a/tests/data/simplify-bugs/05-mutations.txt +++ /dev/null @@ -1 +0,0 @@ -site node derived_state diff --git a/tests/data/simplify-bugs/05-nodes.txt b/tests/data/simplify-bugs/05-nodes.txt deleted file mode 100644 index 0988a2e2d..000000000 --- a/tests/data/simplify-bugs/05-nodes.txt +++ /dev/null @@ -1,14 +0,0 @@ -id is_sample population time -0 0 0 6.0 -1 0 0 2.0 -2 0 0 2.0 -3 0 0 2.0 -4 0 0 2.0 -5 0 0 1.0 -6 0 0 1.0 -7 0 0 1.0 -8 1 0 0.0 -9 1 0 0.0 -10 1 0 0.0 -11 1 0 0.0 -12 1 0 0.0 diff --git a/tests/data/simplify-bugs/05-sites.txt b/tests/data/simplify-bugs/05-sites.txt deleted file mode 100644 index 3f12d4059..000000000 --- a/tests/data/simplify-bugs/05-sites.txt +++ /dev/null @@ -1 +0,0 @@ -position ancestral_state