From ec6b9cd69e77389234f6cd5a4b056aa38a260775 Mon Sep 17 00:00:00 2001 From: Tijs Alleman Date: Thu, 25 Jul 2024 11:18:10 -0400 Subject: [PATCH] Mention in all tutorials that there is an environment --- docs/enzyme_kinetics.md | 2 +- docs/influenza_1718.md | 2 +- docs/workflow.md | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/docs/enzyme_kinetics.md b/docs/enzyme_kinetics.md index 9939810..6eba8e1 100644 --- a/docs/enzyme_kinetics.md +++ b/docs/enzyme_kinetics.md @@ -23,7 +23,7 @@ This part of the tutorial can be replicated by running ```bash python calibrate_intrinsic_kinetics.py ``` -located in `~/tutorials/enzyme_kinetics/`. +located in `~/tutorials/enzyme_kinetics/`. An environment containing the dependencies needed to run this tutorial is provided in `~/tutorial_env.yml`. ### Experiments and model equations diff --git a/docs/influenza_1718.md b/docs/influenza_1718.md index ef52a17..1c05252 100644 --- a/docs/influenza_1718.md +++ b/docs/influenza_1718.md @@ -13,7 +13,7 @@ This tutorial can be replicated by running ```bash python calibration.py ``` -located in `~/tutorials/influenza_1718/`. +located in `~/tutorials/influenza_1718/`. An environment containing the dependencies needed to run this tutorial is provided in `~/tutorial_env.yml`. ## Data diff --git a/docs/workflow.md b/docs/workflow.md index be8dc45..1703447 100644 --- a/docs/workflow.md +++ b/docs/workflow.md @@ -10,7 +10,7 @@ In this tutorial, we'll use the simple SIR disease model without dimensions from 6. Visualize the goodness-of-fit 7. Perform a scenario analysis -By using a simple model, we can focus on the general workflow and on the most important functions of pySODM, which will be similar in the more advanced [enzyme kinetics](enzyme_kinetics.md) and [Influenza](influenza_1718.md) case studies available on this documentation website. This tutorial can be reproduced by running `~/tutorials/SIR/workflow_tutorial.py` +By using a simple model, we can focus on the general workflow and on the most important functions of pySODM, which will be similar in the more advanced [enzyme kinetics](enzyme_kinetics.md) and [Influenza](influenza_1718.md) case studies available on this documentation website. This tutorial can be reproduced by running `~/tutorials/SIR/workflow_tutorial.py`, an environment containing the dependencies needed to run this tutorial is provided in `~/tutorial_env.yml`. ### Import dependencies