diff --git a/jupyter-covid19/Dockerfile b/jupyter-covid19/Dockerfile index ee03b021..c4953700 100644 --- a/jupyter-covid19/Dockerfile +++ b/jupyter-covid19/Dockerfile @@ -41,6 +41,16 @@ RUN touch /home/jovyan/covid19-notebook/symptoms_and_fatality_covid19.ipynb ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/SSR/SSR_notebook.ipynb /home/jovyan/covid19-notebook/ RUN touch /home/jovyan/covid19-notebook/SSR_notebook.ipynb +ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/X-ray/DarkCovidNet_binary_classes.ipynb /home/jovyan/covid19-notebook/ +RUN touch /home/jovyan/covid19-notebook/DarkCovidNet_binary_classes.ipynb + +ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/X-ray/DarkCovidNet_three_classes.ipynb /home/jovyan/covid19-notebook/ +RUN touch /home/jovyan/covid19-notebook/DarkCovidNet_three_classes.ipynb + +# peregrine helper script required by the X-ray notebooks +ADD https://raw.githubusercontent.com/uc-cdis/covid19-tools/master/covid19-notebooks/X-ray/peregrine.py /home/jovyan/covid19-notebook/ +RUN touch /home/jovyan/covid19-notebook/peregrine.py + RUN chown -R jovyan:users /home/jovyan/covid19-notebook # premade notebooks dependencies