index.md

UC Davis December 18-20, 2017

UC Berkeley January 10-12, 2018

UC SF March 19-21, 2018

github link

Day 1

• Introduction
• [Single Cell Technologies](day1/UCD single cell technology informatics talk.pdf) (Eric Chow, UCSF talk)
• Logging In and transferring files
• Intro to command-line
• Bioinformatics
• Lunch - Sponsored by Takara
• Takara Technology talk
• Working on a cluster
• Generating an expression matrix from 10x sc data

Day 2

• Intro to R

• Dataset Introduction

• Seurat Analysis - PART 1

  • The R markdown file - PART 1

• Lunch - Sponsored by 10X genomics

• 10X genomics Technology talk

• Seurat Analysis - PART 2

  • The R markdown file - PART 2

• Seurat Analysis - PART 3

  • The R markdown file - PART 3

Day 3

• Seurat Analysis - PART 4
  • The R markdown file - PART 4
• Experimental Design
• Lunch - Sponsored by Illumina
• Illumina Technology talk
• Seurat Analysis - PART 5
  • The R markdown file - PART 5
• Closing Thoughts

POST WORKSHOP ADDITION

• Seurat Analysis - PART 6
  • The R markdown file - PART 6

Evaluation!

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