Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Qi: I experience unable to read in the trial loom file showed as below, any suggestions? Thank you very much. #18

Open
MQMQ2018 opened this issue Jan 19, 2020 · 0 comments

Comments

@MQMQ2018
Copy link

Dear velocyto-team:

I experience unable to read in the trial loom file showed as below, any suggestions? Thank you very much.

The Error Messenge:

vlm = vcy.VelocytoLoom("/data/DentateGyrus.loom")
Traceback (most recent call last):
File "", line 1, in
File "/opt/apps/bio/velocyto-0.17.17/lib/python3.7/site-packages/velocyto/analysis.py", line 58, in init
ds = loompy.connect(self.loom_filepath)
File "/opt/apps/bio/velocyto-0.17.17/lib/python3.7/site-packages/loompy/loompy.py", line 1389, in connect
return LoomConnection(filename, mode, validate=validate)
File "/opt/apps/bio/velocyto-0.17.17/lib/python3.7/site-packages/loompy/loompy.py", line 84, in init
self._file = h5py.File(filename, mode)
File "/opt/apps/bio/velocyto-0.17.17/lib/python3.7/site-packages/h5py/_hl/files.py", line 408, in init
swmr=swmr)
File "/opt/apps/bio/velocyto-0.17.17/lib/python3.7/site-packages/h5py/_hl/files.py", line 175, in make_fid
fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
File "h5py/h5f.pyx", line 88, in h5py.h5f.open
OSError: Unable to open file (unable to lock file, errno = 11, error message = 'Resource temporarily unavailable')

Qi

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant