From 11904da42979b998d2a0632aefd9e451381c61d0 Mon Sep 17 00:00:00 2001 From: Faith Okamoto <52177356+faithokamoto@users.noreply.github.com> Date: Fri, 6 Dec 2024 17:11:43 -0800 Subject: [PATCH] use original passing transcript --- src/unittest/transcriptome.cpp | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/src/unittest/transcriptome.cpp b/src/unittest/transcriptome.cpp index e6fa4fef79..83ba9746b4 100644 --- a/src/unittest/transcriptome.cpp +++ b/src/unittest/transcriptome.cpp @@ -503,9 +503,12 @@ namespace vg { transcript_stream2 << "path1\t.\texon\t2\t7\t.\t+\t.\ttranscript_id=transcript1;exon_number=1" << endl; transcript_stream2 << "path1\t.\texon\t19\t21\t.\t+\t.\ttranscript_id=transcript1;exon_number=3" << endl; transcript_stream2 << "path1\t.\texon\t16\t21\t.\t-\t.\tID=exon:transcript2:0;transcript_id=transcript2;" << endl; - transcript_stream2 << "path1\t.\texon\t2\t7\t.\t-\t.\tID=exon:transcript2:1;transcript_id=transcript2" << endl; - transcript_stream2 << "path1\t.\texon\t18\t21\t.\t+\t.\texon_number=2;transcript_id=transcript3" << endl; + transcript_stream2 << "path1\t.\texon\t8\t9\t.\t-\t.\tID=exon:transcript2:1;transcript_id=transcript2" << endl; + transcript_stream2 << "path1\t.\texon\t2\t7\t.\t-\t.\tID=exon:transcript2:2;transcript_id=transcript2" << endl; transcript_stream2 << "path1\t.\texon\t9\t11\t.\t+\t.\texon_number=1;transcript_id=transcript3" << endl; + transcript_stream2 << "path1\t.\texon\t18\t21\t.\t+\t.\texon_number=2;transcript_id=transcript3" << endl; + transcript_stream2 << "path1\t.\texon\t8\t10\t.\t+\t.\ttranscript_id=transcript4" << endl; + transcript_stream2 << "path1\t.\texon\t3\t6\t.\t+\t.\ttranscript_id=transcript4" << endl; transcriptome.add_reference_transcripts(vector({&transcript_stream2}), empty_haplotype_index, false, false);