diff --git a/src/unittest/snarl_seed_clusterer.cpp b/src/unittest/snarl_seed_clusterer.cpp index 454765c55a..7b4d62c74b 100644 --- a/src/unittest/snarl_seed_clusterer.cpp +++ b/src/unittest/snarl_seed_clusterer.cpp @@ -3328,61 +3328,61 @@ namespace unittest { // REQUIRE(clusters.size() == 1); //}//end test case - TEST_CASE("Failed graph", "[failed_cluster]"){ - - HashGraph graph; - graph.deserialize("testGraph.hg"); - IntegratedSnarlFinder snarl_finder(graph); - SnarlDistanceIndex dist_index; - fill_in_distance_index(&dist_index, &graph, &snarl_finder); + //TEST_CASE("Failed graph", "[failed_cluster]"){ + // HashGraph graph; + // graph.deserialize("testGraph.hg"); + // IntegratedSnarlFinder snarl_finder(graph); + // SnarlDistanceIndex dist_index; + // fill_in_distance_index(&dist_index, &graph, &snarl_finder); - dist_index.print_self(); - SnarlDistanceIndexClusterer clusterer(dist_index, &graph); + // dist_index.print_self(); + // SnarlDistanceIndexClusterer clusterer(dist_index, &graph); - vector> pos_ts(2); - pos_ts[0].emplace_back(15, false, 9); - pos_ts[0].emplace_back(19, false, 23); - pos_ts[0].emplace_back(12, false, 4); - pos_ts[0].emplace_back(7, true, 2); - pos_ts[0].emplace_back(3, false, 16); - pos_ts[0].emplace_back(1, true, 6); - pos_ts[0].emplace_back(8, false, 10); - pos_ts[0].emplace_back(1, true, 2); - pos_ts[1].emplace_back(18, true, 0); - pos_ts[1].emplace_back(2, false, 0); - pos_ts[1].emplace_back(5, true, 19); - pos_ts[1].emplace_back(7, true, 9); - pos_ts[1].emplace_back(12, false, 9); - pos_ts[1].emplace_back(8, true, 14); - pos_ts[1].emplace_back(7, false, 7); - pos_ts[1].emplace_back(4, false, 2); - pos_ts[1].emplace_back(17, false, 42); - pos_ts[1].emplace_back(18, true, 0); - pos_ts[1].emplace_back(16, false, 3); - pos_ts[1].emplace_back(11, true, 16); - pos_ts[1].emplace_back(2, false, 0); - - vector> seeds(2); - for (size_t read_num = 0 ; read_num < pos_ts.size() ; read_num++) { - for (pos_t pos : pos_ts[read_num]) { - ZipCode zipcode; - zipcode.fill_in_zipcode(dist_index, pos); - zipcode.fill_in_full_decoder(); - seeds[read_num].push_back({ pos, 0, zipcode}); - } - } + // vector> pos_ts(2); + // pos_ts[0].emplace_back(15, false, 9); + // pos_ts[0].emplace_back(19, false, 23); + // pos_ts[0].emplace_back(12, false, 4); + // pos_ts[0].emplace_back(7, true, 2); + // pos_ts[0].emplace_back(3, false, 16); + // pos_ts[0].emplace_back(1, true, 6); + // pos_ts[0].emplace_back(8, false, 10); + // pos_ts[0].emplace_back(1, true, 2); + // pos_ts[1].emplace_back(18, true, 0); + // pos_ts[1].emplace_back(2, false, 0); + // pos_ts[1].emplace_back(5, true, 19); + // pos_ts[1].emplace_back(7, true, 9); + // pos_ts[1].emplace_back(12, false, 9); + // pos_ts[1].emplace_back(8, true, 14); + // pos_ts[1].emplace_back(7, false, 7); + // pos_ts[1].emplace_back(4, false, 2); + // pos_ts[1].emplace_back(17, false, 42); + // pos_ts[1].emplace_back(18, true, 0); + // pos_ts[1].emplace_back(16, false, 3); + // pos_ts[1].emplace_back(11, true, 16); + // pos_ts[1].emplace_back(2, false, 0); + + // vector> seeds(2); + // for (size_t read_num = 0 ; read_num < pos_ts.size() ; read_num++) { + // for (pos_t pos : pos_ts[read_num]) { + + // ZipCode zipcode; + // zipcode.fill_in_zipcode(dist_index, pos); + // zipcode.fill_in_full_decoder(); + // seeds[read_num].push_back({ pos, 0, zipcode}); + // } + // } - vector> clusters = clusterer.cluster_seeds(seeds, 15, 35); + // vector> clusters = clusterer.cluster_seeds(seeds, 15, 35); - REQUIRE(clusters.size() == 2); - - REQUIRE(false); - } + // REQUIRE(clusters.size() == 2); + // + // REQUIRE(false); + //} TEST_CASE("Random graphs", "[cluster][cluster_random]"){