DESCRIPTION

Package: mppR
Type: Package
Version: 1.5.0
Date: 2024-02-22
Title: Multi-Parent Population QTL Analysis
Authors@R: c(person("Vincent", "Garin", role = c("aut", "cre"),
             email = "vincent.garin6@gmail.com",
             comment = c(ORCID = "0000-0002-5571-1841")),
             person("Valentin", "Wimmer", role = c("aut")),
             person("Dietrich", "Borchardt", role = c("ctb", "dtc")),
             person("Fred", "van Eeuwijk", role = c("ctb", "ths")),
             person("Marcos", "Malosetti", role = c("ctb", "ths")))
Description: Analysis of experimental multi-parent populations to detect regions
             of the genome (called quantitative trait loci, QTLs) influencing
             phenotypic traits measured in unique and multiple environments.
             The population must be composed of crosses between a set of at
             least three parents (e.g. factorial design, 'diallel', or nested
             association mapping). The functions cover data processing,
             QTL detection, and results visualization. The implemented methodology
             is described in Garin, Wimmer, Mezmouk, Malosetti and van Eeuwijk (2017)
             <doi:10.1007/s00122-017-2923-3>, in Garin, Malosetti
             and van Eeuwijk (2020) <doi: 10.1007/s00122-020-03621-0>,
             and in Garin, Diallo, Tekete, Thera, ..., and Rami (2024) <doi: 10.1093/genetics/iyae003>.
License: GPL-3
Imports:
    dplyr,
    ggplot2,
    graphics,
    grDevices,
    igraph,
    Matrix,
    methods,
    nlme,
    parallel,
    qtl,
    stats,
    utils
Depends:
    R(>= 3.1.0)
Suggests:
    knitr,
    rmarkdown,
    testthat
RoxygenNote: 7.2.3
Encoding: UTF-8
URL: https://github.com/vincentgarin/mppR
BugReports: https://github.com/vincentgarin/mppR/issues
VignetteBuilder: knitr