Clusthaplo plots

[valentinw]

Request to get clusthaplo plots by chromosome when running parental_cluster function optionally

[vincentgarin]

See commit Test of QC_proc and modification of parent_cluster (eacfb7c).

[valentinw]

Thanks, works fine. Would it be possible to get as outputs also pdf files of clusthaplo plots? In addition, would it be possible to add chromosome names as title in files?

[vincentgarin]

I tried to implement the possibility to have the clusthaplo plot in pdf format but so far I did not succeeded

[valentinw]

Vincent, before the plots from the parent cluster function were names as chr_chrnumber.jpg, e.g. chr_1.jpg. Did you change this coding scheme?

[vincentgarin]

The plot are still coded in the same way chr_chr#.pdf. Actually I checked and now it is possible to get the plot in pdf format.

[valentinw]

Thanks, this works now. Do you think it is possible to add the chromosome number to the legend of the plot?

[vincentgarin]

Ah yes that was the problem. I was able to implement the production of the haplotype graph in pdf format but so far I did not suceed to add a legend.