Error with Pandas version 2

[davideyre]

• comorbidipy version: 0.5.0
• Python version: 3.9.6
• Operating System: macOS

Description

Comorbidipy works fine with pandas 1.4.0, but when trying to run with a more recent version I get this error, e.g. version 1.5.0 or version 2.0.1

Traceback (most recent call last):
  File "main.py", line 7, in <module>
    from comorbidipy import comorbidity
  File "venv/lib/python3.9/site-packages/comorbidipy/__init__.py", line 7, in <module>
    from .calculator import comorbidity, hfrs, disability
  File "venv/lib/python3.9/site-packages/comorbidipy/calculator.py", line 5, in <module>
    from pandas.core.common import SettingWithCopyWarning
ImportError: cannot import name 'SettingWithCopyWarning' from 'pandas.core.common' (venv/lib/python3.9/site-packages/pandas/core/common.py)

The issue seems to be that the import is now in pandas.errors, this doesn't work -

from pandas.core.common import SettingWithCopyWarning

But this does

 from pandas.errors import SettingWithCopyWarning

[Padmapalita]

Upvoting this issue.

[rbngz]

It seems to be fixed with the recent commit but has not yet been published to PyPi.
Simply install from Github using the commit hash:

pip install git+https://github.com/vvcb/comorbidipy.git@c676a8067ce343704d75bcf8180f9baa1ac47664

Make sure to uninstall any previous version first using

pip uninstall comorbidipy

[smgpulse007]

Goto calculator.py
~AppData\Local\Programs\Python\Python311\Lib\site-packages\comorbidipy

Change from pandas.core.common import SettingWithCopyWarning

TO
from pandas.errors import SettingWithCopyWarning

@vvcb This fixes the issue and the import works as described in the docs

[MattStammers]

It seems to be fixed with the recent commit but has not yet been published to PyPi. Simply install from Github using the commit hash:

pip install git+https://github.com/vvcb/comorbidipy.git@c676a8067ce343704d75bcf8180f9baa1ac47664

Make sure to uninstall any previous version first using

pip uninstall comorbidipy

@rbngz is right. @vvcb you need to patch the current pypi version.