From b467d868245493d008fc7ce50fc9a18fd95e5997 Mon Sep 17 00:00:00 2001
From: wdecoster <decosterwouter@gmail.com>
Date: Sun, 4 Aug 2024 00:23:03 +0200
Subject: [PATCH] more logging

---
 Cargo.toml       | 2 +-
 src/consensus.rs | 5 ++++-
 2 files changed, 5 insertions(+), 2 deletions(-)

diff --git a/Cargo.toml b/Cargo.toml
index 5febf28..12046b9 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "STRdust"
-version = "0.8.8"
+version = "0.9.1"
 edition = "2021"
 
 
diff --git a/src/consensus.rs b/src/consensus.rs
index 3bc75b6..72b45d7 100644
--- a/src/consensus.rs
+++ b/src/consensus.rs
@@ -99,15 +99,18 @@ pub fn consensus(
         // I empirically determined the following parameters to be suitable,
         // but further testing on other repeats would be good
         // mainly have to make sure the consensus does not get longer than the individual insertions
+        log::info!("Creating consensus for {repeat}");
         let scoring = Scoring::new(-12, -6, |a: u8, b: u8| if a == b { 3 } else { -4 });
         let mut aligner = Aligner::new(scoring, &seqs_bytes[0]);
         for seq in seqs_bytes.iter().skip(1) {
             aligner.global(seq).add_to_graph();
         }
+        debug!("Added all sequences to graph");
 
         let consensus = aligner.consensus();
+        debug!("Created consensus");
         let score = aligner.global(&consensus).alignment().score;
-
+        debug!("Calculated score");
         Consensus {
             seq: Some(std::str::from_utf8(&consensus).unwrap().to_string()),
             support: num_reads,