retina

UQ for Digital Retinal Images for Vessel Extraction (DRIVE)

Getting started (requires datasets)

Please see UQ_DRIVE_stochastic_sample_2000.ipynb and UQ_DRIVE_stochastic_sample_200.ipynb.

Files

• models.py contains the scripts for the Bayesian dropout and network architectures (2D U-Net).
• utils.py contains functions for the prediction and the preprocessing procedures.

References

• DRIVE website
• J.J. Staal, M.D. Abramoff, M. Niemeijer, M.A. Viergever, B. van Ginneken, "Ridge based vessel segmentation in color images of the retina", IEEE Transactions on Medical Imaging, 2004, vol. 23, pp. 501-509.