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.gitignore
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./03_outputs/GSE89408_correlation_matrix.csv
./03_outputs/.ipynb_checkpoints/GSE89408_correlation_matrix-checkpoint.csv
./03_outputs/E-MTAB-6141_correlation_matrix.csv
03_outputs/.ipynb_checkpoints/C0003873_disease_gda_summary_filtered-checkpoint.tsv
03_outputs/.ipynb_checkpoints/correlation_mtx_merged_filtered-checkpoint.csv
03_outputs/.ipynb_checkpoints/E-MTAB-6141_correlation_mtx_common_genes-checkpoint.csv
03_outputs/.ipynb_checkpoints/genelist-Eur-downloaded-checkpoint.csv
03_outputs/.ipynb_checkpoints/GSE89408_correlation_matrix-checkpoint.csv
03_outputs/.ipynb_checkpoints/GSE89408_differential_expresssion-checkpoint.csv
03_outputs/.ipynb_checkpoints/GSE89408_tfs_matrix-checkpoint.csv
03_outputs/.ipynb_checkpoints/protein_drug_interactions_filtered-checkpoint.csv
03_outputs/.ipynb_checkpoints/string_interactions_short-checkpoint.tsv
03_outputs/.ipynb_checkpoints/Untitled-checkpoint.ipynb
02_notebooks/.ipynb_checkpoints/01_OP_GSE89408-checkpoint.ipynb
02_notebooks/.ipynb_checkpoints/02_second_dataset-checkpoint.ipynb
02_notebooks/.ipynb_checkpoints/03_significant_genes_overlaps_between_two_studies-checkpoint.ipynb
02_notebooks/.ipynb_checkpoints/04_network_layers_preparation-checkpoint.ipynb
02_notebooks/.ipynb_checkpoints/05_network_analysis-checkpoint.ipynb
01_data/.ipynb_checkpoints/mat-checkpoint.tsv
01_data/.ipynb_checkpoints/metadata-checkpoint.tsv
01_data/.ipynb_checkpoints/proteomics_hits-checkpoint.txt
01_data/.ipynb_checkpoints/sig_genes-checkpoint.txt
01_data/.ipynb_checkpoints/TF_names_v_1.01-checkpoint.txt
03_outputs/Untitled.ipynb