From 475b107fe7d322eb4e320f19482a026ad5f68bf4 Mon Sep 17 00:00:00 2001
From: Xiaoran Zhou <zxrzxr@gmail.com>
Date: Tue, 20 Feb 2024 19:00:45 +0100
Subject: [PATCH] update..

---
 index.html            | 40 +++++++++++++++++++++++++++++-----------
 public/monopodial.xml | 10 +++++-----
 2 files changed, 34 insertions(+), 16 deletions(-)

diff --git a/index.html b/index.html
index c582f35..36c0a9d 100644
--- a/index.html
+++ b/index.html
@@ -79,7 +79,7 @@ <h2 id="contact">Contact</h2>
   <div class="" style="background-color: black;    position: absolute; top:calc( 0% );left: 50%;transform: translate(-50%, 0%); ">
     <nav class="navbar navbar-dark navbar-expand-lg" style="background-color: #000000;">
       
-        <button class="navbar-brand btn btn-dark" >CPlantBox WASM</button>
+        <button class="navbar-brand btn btn-dark" >CPlantBox</button>
         <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarSupportedContent"
           aria-controls="navbarSupportedContent" aria-expanded="false" aria-label="Toggle navigation">
           <span class="navbar-toggler-icon"></span>
@@ -162,8 +162,8 @@ <h2 id="contact">Contact</h2>
     <input type="file" id="VTPInput2" multiple="" accept=".vtp" style="display: none;">
 
   </div>
-  <div class="toast-container position-absolute top-0 start-50 translate-middle-x">
-    <div class="toast align-items-center m-5 top-0 start-50 translate-middle-x " data-bs-delay="10000" style="z-index:9999;" role="alert" aria-live="assertive" aria-atomic="true" id="URLTo">
+  <div class="toast-container position-absolute top-0 start-50">
+    <div class="toast align-items-center m-5 top-0 start-50 translate-middle-x " data-bs-delay="10000" style="z-index:999;" role="alert" aria-live="assertive" aria-atomic="true" id="URLTo">
       <div class="d-flex">
         <div class="toast-body" >
           Parameter information:
@@ -178,7 +178,7 @@ <h2 id="contact">Contact</h2>
       </div>
     </div>
 
-    <div class="toast align-items-center m-5 top-0 start-50 translate-middle-x " data-bs-delay="10000" style="z-index:9999;" role="alert" aria-live="assertive" aria-atomic="true" id="URLTo1">
+    <div class="toast align-items-center m-5 top-0 start-50 translate-middle-x " data-bs-delay="10000" style="z-index:999;" role="alert" aria-live="assertive" aria-atomic="true" id="URLTo1">
       <div class="d-flex">
         <div class="toast-body" >
           Parameter information:
@@ -9897,7 +9897,13 @@ <h1 class="modal-title fs-5" id="loadingModalLabel">Simulation Running</h1>
                   values: new Float32Array(2 * a),
                 });
                 let s = t.lookupTable.getVectorComponent();
-                t.lookupTable.getVectorMode() === nl.MAGNITUDE &&
+                let lt = t.lookupTable; 
+                //lt.setMappingRange(0, 40),
+                lt.setUseAboveRangeColor(true),
+                lt.setAboveRangeColor(1.0, 1.0, 1.0,0),
+                lt.build();
+                lt.updateRange(),
+                lt.getVectorMode() === nl.MAGNITUDE &&
                   r.getNumberOfComponents() > 1 &&
                   (s = -1),
                   e.createColorTextureCoordinates(
@@ -9907,7 +9913,7 @@ <h1 class="modal-title fs-5" id="loadingModalLabel">Simulation Running</h1>
                     n,
                     s,
                     o,
-                    t.lookupTable.getRange(),
+                    o,//t.lookupTable.getRange(),
                     t.colorTextureMap
                       .getPointData()
                       .getScalars()
@@ -23441,8 +23447,8 @@ <h1 class="modal-title fs-5" id="loadingModalLabel">Simulation Running</h1>
               0.738259, 0.890317, 0.0825461, 0.337793, 0.84546, 0.86136,
               0.0147555, 0.471572, 0.912191, 0.808018, 0, 0.605351,
               0.962848, 0.710445, 0, 0.73913, 0.999469, 0.600258, 0.0176284,
-              0.87291, 0.994156, 0.445975, 0.193912, 1, 0.980407, 0.247105,
-              0.262699,
+              0.87291, 0.994156, 0.445975, 0.193912, 0.999, 0.980407, 0.247105,
+              0.262699,1, 0,0,0
             ],
           },
           {
@@ -37314,8 +37320,8 @@ <h1 class="modal-title fs-5" id="loadingModalLabel">Simulation Running</h1>
             //c.appendChild(o),
             document.getElementById("colorMenu").appendChild(n),
             document.getElementById("attributeMenu").appendChild(i),
-            c.appendChild(a),
-            //c.appendChild(s),
+            //c.appendChild(a),
+            document.getElementById("attributeMenu").appendChild(s),
             void 0 !== navigator.xr &&
             N_.getXrSupported() &&
             null !== G_ &&
@@ -37335,6 +37341,15 @@ <h1 class="modal-title fs-5" id="loadingModalLabel">Simulation Running</h1>
             g = f.getPointData().getScalars(),
             y = [].concat(g ? g.getRange() : [0, 1]);
           let v = ka;
+
+          function setRange(start,end) {
+            const e = Gm.getPresetByName(n.value);
+            p.applyColorMap(e),
+              p.setMappingRange(start, end),
+              p.updateRange(),
+              P_.render();
+          };
+          window.setRange = setRange;
           function b() {
             const e = Gm.getPresetByName(n.value);
             p.applyColorMap(e),
@@ -37479,6 +37494,7 @@ <h1 class="modal-title fs-5" id="loadingModalLabel">Simulation Running</h1>
               renderer: O_,
               renderWindow: P_,
             }),
+            O_.getActiveCamera(),
             W_.update(), 
             closeModal() ;
           function startOrStop(boole){
@@ -37497,9 +37513,11 @@ <h1 class="modal-title fs-5" id="loadingModalLabel">Simulation Running</h1>
                 
                 const r = O_.getActiveCamera();
                 r.azimuth(0.5),
+                
                 r.setFocalPoint(0,0,-3),
-                r.setViewUp(0,0,0.5),
+                r.setViewUp(0,0,0.00001),
                 r.setViewAngle(20),
+                //r.zoom(-10),
                 P_.render(),
                 W_.update();
                 //console.log("rotating at" + xxx+ " distance is"+ distance);
diff --git a/public/monopodial.xml b/public/monopodial.xml
index b4d5c89..89e4b97 100644
--- a/public/monopodial.xml
+++ b/public/monopodial.xml
@@ -203,7 +203,7 @@
 <parameter name="ln" value="35" dev="0" functiontype="2"/>
 <parameter name="lnf" value="2"/>
 <!--Inter-lateral distance [cm];-->
-<parameter name="lmax" value="80" dev="8"/>
+<parameter name="lmax" value="80" dev="0"/>
 <!--Inter-lateral distance [cm];-->
 <parameter name="nob" value="2.2000000000000002" dev="0.22857142857142856"/>
 <parameter name="r" value="0.80000000000000004" dev="0.035000000000000003"/>
@@ -229,7 +229,7 @@
 <parameter name="ln" value="15" dev="0" functiontype="2"/>
 <parameter name="lnf" value="2"/>
 <!--Inter-lateral distance [cm];-->
-<parameter name="lmax" value="60" dev="3"/>
+<parameter name="lmax" value="60" dev="0"/>
 <!--Inter-lateral distance [cm];-->
 <parameter name="nob" value="2" dev="0.20000000000000001"/>
 <parameter name="r" value="2.3999999999999999" dev="0.035000000000000003"/>
@@ -255,7 +255,7 @@
 <parameter name="ln" value="20" dev="0" functiontype="2"/>
 <parameter name="lnf" value="2"/>
 <!--Inter-lateral distance [cm];-->
-<parameter name="lmax" value="15" dev="3"/>
+<parameter name="lmax" value="15" dev="0"/>
 <!--Inter-lateral distance [cm];-->
 <parameter name="nob" value="0.25" dev="0.14999999999999999"/>
 <parameter name="r" value="1.2" dev="0.035000000000000003"/>
@@ -280,7 +280,7 @@
 <!--Apical zone [cm];-->
 <parameter name="ln" value="0" dev="1.0000000000000001e-05" functiontype="1"/>
 <!--Inter-lateral distance [cm];-->
-<parameter name="lmax" value="0" dev="5.9000000000000004"/>
+<parameter name="lmax" value="0" dev="0"/>
 <parameter name="lnf" value="1"/>
 <!--Inter-lateral distance [cm];-->
 <parameter name="nob" value="0" dev="0"/>
@@ -304,7 +304,7 @@
 <!--Basal zone [cm]-->
 <parameter name="la" value="0" dev="0"/>
 <!--Apical zone [cm];-->
-<parameter name="ln" value="0.20000000000000001" dev="0" functiontype="573082939"/>
+<parameter name="ln" value="0.20000000000000001" dev="0" functiontype="0"/>
 <!--Inter-lateral distance [cm];-->
 <parameter name="lmax" value="0" dev="0"/>
 <!--Inter-lateral distance [cm];-->