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layers.py
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from torch import Tensor
from torch_geometric.nn.conv import MessagePassing
from torch_geometric.nn.dense.linear import Linear
from torch import Tensor
import torch.nn.functional as F
from torch_sparse import SparseTensor, matmul
from torch_geometric.typing import Adj, OptTensor, PairTensor, OptPairTensor, Adj, Size
from typing import Callable, Union, Optional
import torch
from torch import Tensor
from torch.nn import Sequential, Linear, ReLU, Sigmoid, Parameter
from torch_sparse import SparseTensor, matmul
from torch_geometric.nn.conv.gcn_conv import gcn_norm
from typing import Union, Tuple
from torch import Tensor
import torch.nn as nn
from torch_geometric.nn.conv import MessagePassing
from torch_geometric.nn.dense.linear import Linear
class Attention(nn.Module):
def __init__(self, in_size, hidden_size=16, activation = 'softmax'):
super(Attention, self).__init__()
self.activation = activation
if hidden_size != 0:
self.project = nn.Sequential(
nn.Linear(in_size, hidden_size),
nn.Tanh(),
nn.Linear(hidden_size, 1, bias=False)
)
else:
self.project = nn.Sequential(
nn.Linear(in_size, 1, bias=False)
)
def forward(self, z):
w = self.project(z)
if self.activation == 'softmax':
beta = torch.softmax(w, dim=1)
elif self.activation == 'tanh':
beta = torch.tanh(w)
return (beta * z).sum(1), beta
class DualLEAConv(MessagePassing):
r"""The local extremum graph neural network operator from the
`"ASAP: Adaptive Structure Aware Pooling for Learning Hierarchical Graph
Representations" <https://arxiv.org/abs/1911.07979>`_ paper, which finds
the importance of nodes with respect to their neighbors using the
difference operator:
.. math::
\mathbf{x}^{\prime}_i = \mathbf{x}_i \cdot \mathbf{\Theta}_1 +
\sum_{j \in \mathcal{N}(i)} e_{j,i} \cdot
(\mathbf{\Theta}_2 \mathbf{x}_i - \mathbf{\Theta}_3 \mathbf{x}_j)
where :math:`e_{j,i}` denotes the edge weight from source node :obj:`j` to
target node :obj:`i` (default: :obj:`1`)
Args:
in_channels (int or tuple): Size of each input sample, or :obj:`-1` to
derive the size from the first input(s) to the forward method.
A tuple corresponds to the sizes of source and target
dimensionalities.
out_channels (int): Size of each output sample.
bias (bool, optional): If set to :obj:`False`, the layer will
not learn an additive bias. (default: :obj:`True`).
**kwargs (optional): Additional arguments of
:class:`torch_geometric.nn.conv.MessagePassing`.
"""
def __init__(self, in_channels: Union[int, Tuple[int, int]],
out_channels: int, bias: bool = True, sub = False, atten_hidden=16 ,activation='softmax', **kwargs):
kwargs.setdefault('aggr', 'add')
super().__init__(**kwargs)
self.in_channels = in_channels
self.out_channels = out_channels
self.sub = sub
if isinstance(in_channels, int):
in_channels = (in_channels, in_channels)
self.lin = Linear(in_channels[0], out_channels, bias=bias)
self.proj = Attention(in_channels[1], atten_hidden, activation)
# self.lin1 = Linear(in_channels[0], out_channels, bias=bias)
# self.lin2 = Linear(in_channels[0], out_channels, bias=False)
# self.lin3 = Linear(in_channels[1], out_channels, bias=bias)
# self.lin4 = Linear(in_channels[1], out_channels, bias=bias)
# if sub:
# self.lin_sub = Linear(out_channels, out_channels, bias=bias)
# if use_weight:
# self.weight = torch.nn.Parameter(torch.ones(4), requires_grad = True)
# else:
# self.weight = torch.nn.Parameter(torch.ones(4), requires_grad = False)
self.reset_parameters()
def reset_parameters(self):
self.lin.reset_parameters()
# self.lin1.reset_parameters()
# self.lin2.reset_parameters()
# self.lin3.reset_parameters()
# self.lin4.reset_parameters()
def forward(self, x: Union[Tensor, PairTensor], edge_index: Adj,
edge_weight: OptTensor = None) -> Tensor:
""""""
src, dst = edge_index
edge_index_reverse = torch.vstack((dst, src))
if isinstance(x, Tensor):
x = (x, x, x)
i = x[0]
s = x[1]
t = x[2]
# propagate_type: (a: Tensor, b: Tensor, edge_weight: OptTensor)
out1 = self.propagate(edge_index, a=i, b=s, edge_weight=edge_weight,
size=None)
out2 = self.propagate(edge_index_reverse, a=i, b=t, edge_weight=edge_weight,
size=None)
out = torch.stack([x[0], out1, out2], dim=1)
out, att = self.proj(out)
out = self.lin(out).squeeze()
return out, att
def message(self, a_i: Tensor, b_j: Tensor,
edge_weight: OptTensor) -> Tensor:
out = a_i - b_j
return out if edge_weight is None else out * edge_weight.view(-1, 1)
def __repr__(self) -> str:
return (f'{self.__class__.__name__}({self.in_channels}, '
f'{self.out_channels})')
class DualSAGEOConv(MessagePassing):
r"""The GraphSAGE operator from the `"Inductive Representation Learning on
Large Graphs" <https://arxiv.org/abs/1706.02216>`_ paper
.. math::
\mathbf{x}^{\prime}_i = \mathbf{W}_1 \mathbf{x}_i + \mathbf{W}_2 \cdot
\mathrm{mean}_{j \in \mathcal{N(i)}} \mathbf{x}_j
Args:
in_channels (int or tuple): Size of each input sample, or :obj:`-1` to
derive the size from the first input(s) to the forward method.
A tuple corresponds to the sizes of source and target
dimensionalities.
out_channels (int): Size of each output sample.
normalize (bool, optional): If set to :obj:`True`, output features
will be :math:`\ell_2`-normalized, *i.e.*,
:math:`\frac{\mathbf{x}^{\prime}_i}
{\| \mathbf{x}^{\prime}_i \|_2}`.
(default: :obj:`False`)
root_weight (bool, optional): If set to :obj:`False`, the layer will
not add transformed root node features to the output.
(default: :obj:`True`)
bias (bool, optional): If set to :obj:`False`, the layer will not learn
an additive bias. (default: :obj:`True`)
**kwargs (optional): Additional arguments of
:class:`torch_geometric.nn.conv.MessagePassing`.
"""
def __init__(self, in_channels: Union[int, Tuple[int, int]],
out_channels: int, normalize: bool = False,
root_weight: bool = True, bias: bool = True, use_weight=True, aggr='mean',**kwargs):
kwargs.setdefault('aggr', aggr)
super().__init__(**kwargs)
self.in_channels = in_channels
self.out_channels = out_channels
self.normalize = normalize
self.root_weight = root_weight
self.use_weight = use_weight
if isinstance(in_channels, int):
in_channels = (in_channels, in_channels)
self.lin = Linear(in_channels[0], out_channels, bias=bias)
# self.lin_out = Linear(in_channels[0], out_channels, bias=bias)
# if self.root_weight:
# self.lin_r = Linear(in_channels[1], out_channels, bias=False)
# if use_weight:
# self.weight = torch.nn.Parameter(torch.ones(3), requires_grad = True)
# else:
# self.weight = None
self.reset_parameters()
def reset_parameters(self):
self.lin.reset_parameters()
# self.lin_in.reset_parameters()
# self.lin_out.reset_parameters()
# if self.root_weight:
# self.lin_r.reset_parameters()
def forward(self, x: Union[Tensor, OptPairTensor], edge_index: Adj,
size: Size = None) -> Tensor:
""""""
if isinstance(x, Tensor):
x: OptPairTensor = (x, x)
src, dst = edge_index
edge_index_reverse = torch.vstack((dst, src))
# propagate_type: (x: OptPairTensor)
out_i = self.propagate(edge_index, x=x, size=size)
out_o = self.propagate(edge_index_reverse, x=x, size=size)
# out_i = self.lin_in(out_i)
# out_o = self.lin_out(out_o)
x_r = x[1]
# if self.root_weight and x_r is not None:
# if self.use_weight:
# out = self.weight[0]*self.lin_r(x_r) + self.weight[1]*out_o + self.weight[2]*out_i
# else:
# out = self.lin_r(x_r) + out_o + out_i
out = self.lin(x_r + out_i + out_o)
if self.normalize:
out = F.normalize(out, p=2., dim=-1)
return out
def message(self, x_j: Tensor) -> Tensor:
return x_j
def message_and_aggregate(self, adj_t: SparseTensor,
x: OptPairTensor) -> Tensor:
adj_t = adj_t.set_value(None, layout=None)
return matmul(adj_t, x[0], reduce=self.aggr)
class DualSAGEAConv(MessagePassing):
def __init__(self, in_channels: Union[int, Tuple[int, int]],
out_channels: int, bias: bool = True, sub = False, atten_hidden=16 ,activation='softmax', **kwargs):
kwargs.setdefault('aggr', 'add')
super().__init__(**kwargs)
self.in_channels = in_channels
self.out_channels = out_channels
self.sub = sub
if isinstance(in_channels, int):
in_channels = (in_channels, in_channels)
self.lin = Linear(in_channels[0], out_channels, bias=bias)
self.proj = Attention(in_channels[1], atten_hidden, activation)
# self.lin1 = Linear(in_channels[0], out_channels, bias=bias)
# self.lin2 = Linear(in_channels[0], out_channels, bias=False)
# self.lin3 = Linear(in_channels[1], out_channels, bias=bias)
# self.lin4 = Linear(in_channels[1], out_channels, bias=bias)
# if sub:
# self.lin_sub = Linear(out_channels, out_channels, bias=bias)
# if use_weight:
# self.weight = torch.nn.Parameter(torch.ones(4), requires_grad = True)
# else:
# self.weight = torch.nn.Parameter(torch.ones(4), requires_grad = False)
self.reset_parameters()
def reset_parameters(self):
self.lin.reset_parameters()
# self.lin1.reset_parameters()
# self.lin2.reset_parameters()
# self.lin3.reset_parameters()
# self.lin4.reset_parameters()
def forward(self, x: Union[Tensor, PairTensor], edge_index: Adj,
edge_weight: OptTensor = None) -> Tensor:
""""""
if isinstance(x, Tensor):
x: OptPairTensor = (x, x)
src, dst = edge_index
edge_index_reverse = torch.vstack((dst, src))
# propagate_type: (x: OptPairTensor)
out_i = self.propagate(edge_index, x=x)
out_o = self.propagate(edge_index_reverse, x=x)
out = torch.stack([x[0], out_i, out_o], dim=1)
out, att = self.proj(out)
out = self.lin(out).squeeze()
return out, att
def message(self, x_j: Tensor) -> Tensor:
return x_j
def __repr__(self) -> str:
return (f'{self.__class__.__name__}({self.in_channels}, '
f'{self.out_channels})')
class DualLEOConv(MessagePassing):
r"""The local extremum graph neural network operator from the
`"ASAP: Adaptive Structure Aware Pooling for Learning Hierarchical Graph
Representations" <https://arxiv.org/abs/1911.07979>`_ paper, which finds
the importance of nodes with respect to their neighbors using the
difference operator:
.. math::
\mathbf{x}^{\prime}_i = \mathbf{x}_i \cdot \mathbf{\Theta}_1 +
\sum_{j \in \mathcal{N}(i)} e_{j,i} \cdot
(\mathbf{\Theta}_2 \mathbf{x}_i - \mathbf{\Theta}_3 \mathbf{x}_j)
where :math:`e_{j,i}` denotes the edge weight from source node :obj:`j` to
target node :obj:`i` (default: :obj:`1`)
Args:
in_channels (int or tuple): Size of each input sample, or :obj:`-1` to
derive the size from the first input(s) to the forward method.
A tuple corresponds to the sizes of source and target
dimensionalities.
out_channels (int): Size of each output sample.
bias (bool, optional): If set to :obj:`False`, the layer will
not learn an additive bias. (default: :obj:`True`).
**kwargs (optional): Additional arguments of
:class:`torch_geometric.nn.conv.MessagePassing`.
"""
def __init__(self, in_channels: Union[int, Tuple[int, int]],
out_channels: int, bias: bool = True, sub = False, use_weight=True, **kwargs):
kwargs.setdefault('aggr', 'add')
super().__init__(**kwargs)
self.in_channels = in_channels
self.out_channels = out_channels
self.sub = sub
if isinstance(in_channels, int):
in_channels = (in_channels, in_channels)
self.lin = Linear(in_channels[0], out_channels, bias=bias)
# self.lin1 = Linear(in_channels[0], out_channels, bias=bias)
# self.lin2 = Linear(in_channels[0], out_channels, bias=False)
# self.lin3 = Linear(in_channels[1], out_channels, bias=bias)
# self.lin4 = Linear(in_channels[1], out_channels, bias=bias)
# if sub:
# self.lin_sub = Linear(out_channels, out_channels, bias=bias)
# if use_weight:
# self.weight = torch.nn.Parameter(torch.ones(4), requires_grad = True)
# else:
# self.weight = torch.nn.Parameter(torch.ones(4), requires_grad = False)
self.reset_parameters()
def reset_parameters(self):
self.lin.reset_parameters()
# self.lin1.reset_parameters()
# self.lin2.reset_parameters()
# self.lin3.reset_parameters()
# self.lin4.reset_parameters()
def forward(self, x: Union[Tensor, PairTensor], edge_index: Adj,
edge_weight: OptTensor = None) -> Tensor:
""""""
src, dst = edge_index
edge_index_reverse = torch.vstack((dst, src))
if isinstance(x, Tensor):
x = (x, x, x)
i = x[0]
s = x[1]
t = x[2]
# propagate_type: (a: Tensor, b: Tensor, edge_weight: OptTensor)
out1 = self.propagate(edge_index, a=i, b=s, edge_weight=edge_weight,
size=None)
out2 = self.propagate(edge_index_reverse, a=i, b=t, edge_weight=edge_weight,
size=None)
out = self.lin(x[0] + out1 + out2)
return out
def message(self, a_i: Tensor, b_j: Tensor,
edge_weight: OptTensor) -> Tensor:
out = a_i - b_j
return out if edge_weight is None else out * edge_weight.view(-1, 1)
def __repr__(self) -> str:
return (f'{self.__class__.__name__}({self.in_channels}, '
f'{self.out_channels})')
class DualSAGEConv(MessagePassing):
r"""The GraphSAGE operator from the `"Inductive Representation Learning on
Large Graphs" <https://arxiv.org/abs/1706.02216>`_ paper
.. math::
\mathbf{x}^{\prime}_i = \mathbf{W}_1 \mathbf{x}_i + \mathbf{W}_2 \cdot
\mathrm{mean}_{j \in \mathcal{N(i)}} \mathbf{x}_j
Args:
in_channels (int or tuple): Size of each input sample, or :obj:`-1` to
derive the size from the first input(s) to the forward method.
A tuple corresponds to the sizes of source and target
dimensionalities.
out_channels (int): Size of each output sample.
normalize (bool, optional): If set to :obj:`True`, output features
will be :math:`\ell_2`-normalized, *i.e.*,
:math:`\frac{\mathbf{x}^{\prime}_i}
{\| \mathbf{x}^{\prime}_i \|_2}`.
(default: :obj:`False`)
root_weight (bool, optional): If set to :obj:`False`, the layer will
not add transformed root node features to the output.
(default: :obj:`True`)
bias (bool, optional): If set to :obj:`False`, the layer will not learn
an additive bias. (default: :obj:`True`)
**kwargs (optional): Additional arguments of
:class:`torch_geometric.nn.conv.MessagePassing`.
"""
def __init__(self, in_channels: Union[int, Tuple[int, int]],
out_channels: int, normalize: bool = False,
root_weight: bool = True, bias: bool = True, use_weight=True, aggr='mean',**kwargs):
kwargs.setdefault('aggr', aggr)
super().__init__(**kwargs)
self.in_channels = in_channels
self.out_channels = out_channels
self.normalize = normalize
self.root_weight = root_weight
self.use_weight = use_weight
if isinstance(in_channels, int):
in_channels = (in_channels, in_channels)
self.lin_in = Linear(in_channels[0], out_channels, bias=bias)
self.lin_out = Linear(in_channels[0], out_channels, bias=bias)
if self.root_weight:
self.lin_r = Linear(in_channels[1], out_channels, bias=False)
if use_weight:
self.weight = torch.nn.Parameter(torch.ones(3), requires_grad = True)
else:
self.weight = None
self.reset_parameters()
def reset_parameters(self):
self.lin_in.reset_parameters()
self.lin_out.reset_parameters()
if self.root_weight:
self.lin_r.reset_parameters()
def forward(self, x: Union[Tensor, OptPairTensor], edge_index: Adj,
size: Size = None) -> Tensor:
""""""
if isinstance(x, Tensor):
x: OptPairTensor = (x, x)
src, dst = edge_index
edge_index_reverse = torch.vstack((dst, src))
# propagate_type: (x: OptPairTensor)
out_i = self.propagate(edge_index, x=x, size=size)
out_o = self.propagate(edge_index_reverse, x=x, size=size)
out_i = self.lin_in(out_i)
out_o = self.lin_out(out_o)
x_r = x[1]
if self.root_weight and x_r is not None:
if self.use_weight:
out = self.weight[0]*self.lin_r(x_r) + self.weight[1]*out_o + self.weight[2]*out_i
else:
out = self.lin_r(x_r) + out_o + out_i
if self.normalize:
out = F.normalize(out, p=2., dim=-1)
return out
def message(self, x_j: Tensor) -> Tensor:
return x_j
def message_and_aggregate(self, adj_t: SparseTensor,
x: OptPairTensor) -> Tensor:
adj_t = adj_t.set_value(None, layout=None)
return matmul(adj_t, x[0], reduce=self.aggr)
class DualCONTRAConv(MessagePassing):
r"""The GraphSAGE operator from the `"Inductive Representation Learning on
Large Graphs" <https://arxiv.org/abs/1706.02216>`_ paper
.. math::
\mathbf{x}^{\prime}_i = \mathbf{W}_1 \mathbf{x}_i + \mathbf{W}_2 \cdot
\mathrm{mean}_{j \in \mathcal{N(i)}} \mathbf{x}_j
Args:
in_channels (int or tuple): Size of each input sample, or :obj:`-1` to
derive the size from the first input(s) to the forward method.
A tuple corresponds to the sizes of source and target
dimensionalities.
out_channels (int): Size of each output sample.
normalize (bool, optional): If set to :obj:`True`, output features
will be :math:`\ell_2`-normalized, *i.e.*,
:math:`\frac{\mathbf{x}^{\prime}_i}
{\| \mathbf{x}^{\prime}_i \|_2}`.
(default: :obj:`False`)
root_weight (bool, optional): If set to :obj:`False`, the layer will
not add transformed root node features to the output.
(default: :obj:`True`)
bias (bool, optional): If set to :obj:`False`, the layer will not learn
an additive bias. (default: :obj:`True`)
**kwargs (optional): Additional arguments of
:class:`torch_geometric.nn.conv.MessagePassing`.
"""
def __init__(self, in_channels: Union[int, Tuple[int, int]],
out_channels: int, normalize: bool = False,
root_weight: bool = True, bias: bool = True, use_weight=True, aggr='mean',**kwargs):
kwargs.setdefault('aggr', aggr)
super().__init__(**kwargs)
self.in_channels = in_channels
self.out_channels = out_channels
self.normalize = normalize
self.root_weight = root_weight
self.use_weight = use_weight
if isinstance(in_channels, int):
in_channels = (in_channels, in_channels)
self.lin_c = Linear(in_channels[0], out_channels, bias=bias)
if self.root_weight:
self.lin_r = Linear(in_channels[1], out_channels, bias=False)
if use_weight:
self.weight = torch.nn.Parameter(torch.ones(2), requires_grad = True)
else:
self.weight = None
self.reset_parameters()
def reset_parameters(self):
self.lin_c.reset_parameters()
if self.root_weight:
self.lin_r.reset_parameters()
def forward(self, x: Union[Tensor, OptPairTensor], edge_index: Adj,
size: Size = None) -> Tensor:
""""""
if isinstance(x, Tensor):
x: OptPairTensor = (x, x)
src, dst = edge_index
edge_index_reverse = torch.vstack((dst, src))
# propagate_type: (x: OptPairTensor)
out_i = self.propagate(edge_index, x=x, size=size)
out_o = self.propagate(edge_index_reverse, x=x, size=size)
out = self.lin_c(out_i-out_o)
x_r = x[1]
if self.root_weight and x_r is not None:
if self.use_weight:
out = self.weight[0]*self.lin_r(x_r) + self.weight[1]*(out)
else:
out = self.lin_r(x_r) + out
if self.normalize:
out = F.normalize(out, p=2., dim=-1)
return out
def message(self, x_j: Tensor) -> Tensor:
return x_j
def message_and_aggregate(self, adj_t: SparseTensor,
x: OptPairTensor) -> Tensor:
adj_t = adj_t.set_value(None, layout=None)
return matmul(adj_t, x[0], reduce=self.aggr)
class DualLEConv(MessagePassing):
r"""The local extremum graph neural network operator from the
`"ASAP: Adaptive Structure Aware Pooling for Learning Hierarchical Graph
Representations" <https://arxiv.org/abs/1911.07979>`_ paper, which finds
the importance of nodes with respect to their neighbors using the
difference operator:
.. math::
\mathbf{x}^{\prime}_i = \mathbf{x}_i \cdot \mathbf{\Theta}_1 +
\sum_{j \in \mathcal{N}(i)} e_{j,i} \cdot
(\mathbf{\Theta}_2 \mathbf{x}_i - \mathbf{\Theta}_3 \mathbf{x}_j)
where :math:`e_{j,i}` denotes the edge weight from source node :obj:`j` to
target node :obj:`i` (default: :obj:`1`)
Args:
in_channels (int or tuple): Size of each input sample, or :obj:`-1` to
derive the size from the first input(s) to the forward method.
A tuple corresponds to the sizes of source and target
dimensionalities.
out_channels (int): Size of each output sample.
bias (bool, optional): If set to :obj:`False`, the layer will
not learn an additive bias. (default: :obj:`True`).
**kwargs (optional): Additional arguments of
:class:`torch_geometric.nn.conv.MessagePassing`.
"""
def __init__(self, in_channels: Union[int, Tuple[int, int]],
out_channels: int, bias: bool = True, sub = False, use_weight=True, **kwargs):
kwargs.setdefault('aggr', 'add')
super().__init__(**kwargs)
self.in_channels = in_channels
self.out_channels = out_channels
self.sub = sub
if isinstance(in_channels, int):
in_channels = (in_channels, in_channels)
self.lin1 = Linear(in_channels[0], out_channels, bias=bias)
self.lin2 = Linear(in_channels[0], out_channels, bias=False)
self.lin3 = Linear(in_channels[1], out_channels, bias=bias)
self.lin4 = Linear(in_channels[1], out_channels, bias=bias)
if sub:
self.lin_sub = Linear(out_channels, out_channels, bias=bias)
if use_weight:
self.weight = torch.nn.Parameter(torch.ones(4), requires_grad = True)
else:
self.weight = torch.nn.Parameter(torch.ones(4), requires_grad = False)
self.reset_parameters()
def reset_parameters(self):
self.lin1.reset_parameters()
self.lin2.reset_parameters()
self.lin3.reset_parameters()
self.lin4.reset_parameters()
def forward(self, x: Union[Tensor, PairTensor], edge_index: Adj,
edge_weight: OptTensor = None) -> Tensor:
""""""
src, dst = edge_index
edge_index_reverse = torch.vstack((dst, src))
if isinstance(x, Tensor):
x = (x, x, x)
i = self.lin2(x[0])
s = self.lin3(x[1])
t = self.lin4(x[2])
# propagate_type: (a: Tensor, b: Tensor, edge_weight: OptTensor)
out1 = self.propagate(edge_index, a=i, b=s, edge_weight=edge_weight,
size=None)
out1 = self.weight[1]*out1
out2 = self.propagate(edge_index_reverse, a=i, b=t, edge_weight=edge_weight,
size=None)
out2 = self.weight[2]*out2
if self.sub:
out3 = out1/edge_index.shape[1] - out2/edge_index_reverse.shape[1]
out3 = self.weight[3]*self.lin_sub(out3)
return self.weight[0]*self.lin1(x[0])+out1+out2+out3
else:
return self.weight[0]*self.lin1(x[0])+out1+out2
def message(self, a_i: Tensor, b_j: Tensor,
edge_weight: OptTensor) -> Tensor:
out = a_i - b_j
return out if edge_weight is None else out * edge_weight.view(-1, 1)
def __repr__(self) -> str:
return (f'{self.__class__.__name__}({self.in_channels}, '
f'{self.out_channels})')
class DualCATConv(MessagePassing):
r"""The local extremum graph neural network operator from the
`"ASAP: Adaptive Structure Aware Pooling for Learning Hierarchical Graph
Representations" <https://arxiv.org/abs/1911.07979>`_ paper, which finds
the importance of nodes with respect to their neighbors using the
difference operator:
.. math::
\mathbf{x}^{\prime}_i = \mathbf{x}_i \cdot \mathbf{\Theta}_1 +
\sum_{j \in \mathcal{N}(i)} e_{j,i} \cdot
(\mathbf{\Theta}_2 \mathbf{x}_i - \mathbf{\Theta}_3 \mathbf{x}_j)
where :math:`e_{j,i}` denotes the edge weight from source node :obj:`j` to
target node :obj:`i` (default: :obj:`1`)
Args:
in_channels (int or tuple): Size of each input sample, or :obj:`-1` to
derive the size from the first input(s) to the forward method.
A tuple corresponds to the sizes of source and target
dimensionalities.
out_channels (int): Size of each output sample.
bias (bool, optional): If set to :obj:`False`, the layer will
not learn an additive bias. (default: :obj:`True`).
**kwargs (optional): Additional arguments of
:class:`torch_geometric.nn.conv.MessagePassing`.
"""
def __init__(self, in_channels: Union[int, Tuple[int, int]],
out_channels: int, bias: bool = True, **kwargs):
kwargs.setdefault('aggr', 'add')
super().__init__(**kwargs)
self.in_channels = in_channels
self.out_channels = out_channels
if isinstance(in_channels, int):
in_channels = (in_channels, in_channels)
self.lin_self = Linear(in_channels[0], out_channels, bias=bias)
self.lin_cat = Linear(in_channels[0]*2, out_channels, bias=bias)
self.reset_parameters()
def reset_parameters(self):
self.lin_self.reset_parameters()
self.lin_cat.reset_parameters()
def forward(self, x: Union[Tensor, PairTensor], edge_index: Adj,
edge_weight: OptTensor = None) -> Tensor:
""""""
src, dst = edge_index
edge_index_reverse = torch.vstack((dst, src))
if isinstance(x, Tensor):
x = (x, x, x)
i = x[0]
s = x[1]
t = x[2]
# propagate_type: (a: Tensor, b: Tensor, edge_weight: OptTensor)
out1 = self.propagate(edge_index, a=i, b=s, edge_weight=edge_weight,
size=None)
out1 = self.lin_cat(out1)
out2 = self.propagate(edge_index_reverse, a=i, b=t, edge_weight=edge_weight,
size=None)
out2 = self.lin_cat(out2)
out = self.lin_self(i+ out1 + out2)
return out
def message(self, a_i: Tensor, b_j: Tensor,
edge_weight: OptTensor) -> Tensor:
out = torch.cat((a_i - b_j, b_j), -1)
return out
def __repr__(self) -> str:
return (f'{self.__class__.__name__}({self.in_channels}, '
f'{self.out_channels})')
class DualCATAConv(MessagePassing):
r"""The local extremum graph neural network operator from the
`"ASAP: Adaptive Structure Aware Pooling for Learning Hierarchical Graph
Representations" <https://arxiv.org/abs/1911.07979>`_ paper, which finds
the importance of nodes with respect to their neighbors using the
difference operator:
.. math::
\mathbf{x}^{\prime}_i = \mathbf{x}_i \cdot \mathbf{\Theta}_1 +
\sum_{j \in \mathcal{N}(i)} e_{j,i} \cdot
(\mathbf{\Theta}_2 \mathbf{x}_i - \mathbf{\Theta}_3 \mathbf{x}_j)
where :math:`e_{j,i}` denotes the edge weight from source node :obj:`j` to
target node :obj:`i` (default: :obj:`1`)
Args:
in_channels (int or tuple): Size of each input sample, or :obj:`-1` to
derive the size from the first input(s) to the forward method.
A tuple corresponds to the sizes of source and target
dimensionalities.
out_channels (int): Size of each output sample.
bias (bool, optional): If set to :obj:`False`, the layer will
not learn an additive bias. (default: :obj:`True`).
**kwargs (optional): Additional arguments of
:class:`torch_geometric.nn.conv.MessagePassing`.
"""
def __init__(self, in_channels: Union[int, Tuple[int, int]],
out_channels: int, bias: bool = True, atten_hidden=16, dropout=0.0,aggr='add',**kwargs):
kwargs.setdefault('aggr',aggr)
super().__init__(**kwargs)
self.in_channels = in_channels
self.out_channels = out_channels
self.proj = Attention(in_channels, atten_hidden)
self.lin = nn.Sequential(
nn.Linear(in_channels, out_channels, bias=True),
nn.ReLU()
)
if isinstance(in_channels, int):
in_channels = (in_channels, in_channels)
# self.lin_self = Linear(in_channels[0], out_channels, bias=bias)
self.lin_cat = Linear(in_channels[0]*2, out_channels, bias=bias)
self.reset_parameters()
def reset_parameters(self):
# self.lin_self.reset_parameters()
self.lin_cat.reset_parameters()
def forward(self, x: Union[Tensor, PairTensor], edge_index: Adj,
edge_weight: OptTensor = None) -> Tensor:
""""""
src, dst = edge_index
edge_index_reverse = torch.vstack((dst, src))
x = self.lin(x)
if isinstance(x, Tensor):
x = (x, x, x)
i = x[0]
s = x[1]
t = x[2]
# propagate_type: (a: Tensor, b: Tensor, edge_weight: OptTensor)
out1 = self.propagate(edge_index, a=i, b=s, edge_weight=edge_weight,
size=None)
out1 = self.lin_cat(out1)
out2 = self.propagate(edge_index_reverse, a=i, b=t, edge_weight=edge_weight,
size=None)
out2 = self.lin_cat(out2)
out = torch.stack([i, out1, out2], dim=1)
out, att = self.proj(out)
out = out.squeeze()
return out, att
def message(self, a_i: Tensor, b_j: Tensor,
edge_weight: OptTensor) -> Tensor:
out = torch.cat((a_i - b_j, b_j), -1)
return out
def __repr__(self) -> str:
return (f'{self.__class__.__name__}({self.in_channels}, '
f'{self.out_channels})')