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Radio excess from ACG, MCG and PBH#297

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Junsong-Cang wants to merge 129 commits into21cmfast:master21cmfast/21cmFAST:masterfrom Junsong-Cang:Radio_ExcessJunsong-Cang/21cmFAST:Radio_ExcessCopy head branch name to clipboard

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Commits

Commits on Sep 25, 2022

• Added a new file

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• Re-formatted SP.c

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• Added SandBox

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• Replaced SP.c

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• Removed some test files

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• Testing

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• Added a camb style for 21cmFAST in SandBox, main.py is the main module, Tools.py reads parameters from a ini file, *ini are inut files

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• Added Radio_Excess parameters in AstroParams, Trad_box and SFRD_box added to TsBox to store T_Radio and previous snapshots

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• Added main modules for Radio Excess, main calculations are done in SP.c, JSC.h are some modular funcitons

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• Added Hawking Radiation module (Hawking_Radiation.h, see 2108.13256) and some interpolation tables (Tables.h)

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• Added Hawking Radiation module (Hawking_Radiation.h, see 2108.13256) and some interpolation tables (Tables.h)

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• Added caching interface for Trad_box

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• Merge branch 'Radio_Excess' of https://github.com/JSC42/21cmFAST into Radio_Excess

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• Added parameters interface for radio excess and Hawking Radiation

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• inputs.py seems to have been updated in current version of 21cmFAST, reverting back to the original inputs.py

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• Merge branch 'Radio_Excess' of https://github.com/JSC42/21cmFAST into Radio_Excess

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• Updating inputs.py again, this version of inputs.py is identical to the original one (except for one test MSG)

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• Added new parameter interface, sorry about the confusion but please ignore all previous commits fot inputs.py (and possibly outputs.py)

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• Please ignore all previous commits associated with outputs.py, the latest version of output.py seems to be very different from the version I used, so I added caching tools for Radio Temp box and SF…

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• Added T_Radio to T21 calculation

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• removed SandBox interface

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Commits on Sep 30, 2022

• Removed signatures

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Commits on Oct 17, 2022

• Added the USE_Radio_ACG FlagOption to c

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• Added flag_options handlings for all the new features

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• Added FlagOptions for all the new features, sending to SNS server fro tests

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Commits on Oct 25, 2022

• Added a test string

  

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• Removed debug strings, moving all tests to Trantor now

  

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• Added test string

  

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• Added sth

  

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• Merge branch 'Radio_Excess' of https://github.com/JSC42/21cmFAST into Radio_Excess

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• Removed test string, sending to SNS Trantor

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• Merge branch 'Radio_Excess' of https://github.com/JSC42/21cmFAST into Radio_Excess

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Commits on Oct 26, 2022

• Fixed pre-commit error

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• Merge branch '21cmfast:master' into Radio_Excess

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Commits on Oct 27, 2022

• Changed Use_Radio_ACG to Use_RADIO_ACG, other FlagOptions will be in caps after the test

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• Merge branch 'master' into Radio_Excess

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• All went well with initial test, moving on to the other FlagOptions

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• Changed USE_Radio_PBH to USE_RADIO_PBH, preparing for remake tests

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• All new FlagOptions set to cap, preparing for tests

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Commits on Oct 28, 2022

• Revereted BrightnessTemperatureBox.c to the original indentation style

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Commits on Nov 8, 2022

• Merge branch '21cmfast:master' into Radio_Excess

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• Added excess radio background for SUBCELL_RSD

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• Added comments for new params

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• Removed Use_Radio_ACG switch in SP.c, ACG radio bkg switches are now controled by FlagOptions. Moving on to other features

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• Fixed a bug

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• Changed some doc strings

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Commits on Nov 9, 2022

• Removed Use_Radio_MCG Bool in SP.c

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• Removed fbh>1 checks, I will leave it to the user to make sure this does not happen

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• Removed Use_Radio_PBH switch in PS.c

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• Previous commit might have failed, USE_HAWKING_RADIATION bool removed from SP.c

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• Removed subcel_RSD warning in SP.c

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• Fixed a small bug in Get_Radio_Temp_HMG_Astro

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• Moved all Radio_Temp_HMG calculations to RadioExcess.h

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• Added doc

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Commits on Nov 10, 2022

• Fotgot what I changed

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• Moved overdensity boundary calculation outside of the parallel loop, can give wrong results if using multiple threads

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• Testing error module ( not sure why previous push didn't work)

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• More tests in error modul

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• more tests

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• Sending to Trantor server for more tests

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• Removed test

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Commits on Nov 11, 2022

• Moved Radio_MCG param check to python

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• Reformatted inputs.py

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• Moved Radio_PBH and Hawking radiation param checks to inputs.py

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• Updating doc

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• Updating docs v2

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• Fixed a bug, USE_INTERPOLATION_TABLES is in user_params, not flag_options

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• Moved parameter check features in SP.c to inputs.py, allowed basically arbitary (< 10000 ) NUM_FILTER_STEPS_FOR_Ts values by extending the size of Rct_Tk_Table

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Commits on Dec 18, 2022

• Changed fR to be entered in log

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• fR_mini now entered in log10

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• fbh now entered in log10

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• mbh now entered in log10

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• Print mbh in input.py

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• Changed debugging

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• Removed debug feature in SP.c

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Commits on Feb 13, 2023

• Fixed the Radio_Zmin factor in Get_Radio_Temp_HMG_Astro

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• Added the Radio_Zmax factor in Get_Radio_Temp_HMG_PBH

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Commits on Feb 15, 2023

• Set Debug_Printer in RadioExcess.h to false

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Commits on Mar 27, 2023

• removed a backup file (bak.c) and unused OutputFile from Get_Radio_Temp_HMG_Astro

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Commits on Apr 18, 2023

• Fixed Phi_ave and Phi_ave_mini issues

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• removed bak.c

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Commits on Oct 23, 2023

• added a doc

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• added compilation flag for macos

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• moved pbh features to the DarkSide branch, added SFRD_box and SFRD_MINI_box objects in TsBox

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• added debugging features for printing HMF and mturn, mc

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• commented for test

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• test

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Commits on Oct 24, 2023

• using debug for io.c

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Commits on Oct 28, 2023

• moved debug features to the back

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• added some doc for History_box, considering replacing SFRD_box and SFRD_MINI_box with average object or maybe they can somehow be accesses from Fcoll or Fcoll_MINI boxes?

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• preparing to expand History_box to store m_turn_II and m_turn_III

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• changed history_box length and passed mturns from io.c to sp.c, next: accurate and smarter interpolation + feed io mturn to sp.c

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Commits on Oct 29, 2023

• upgraded and tested Find_Index and Interp_1D, works well

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• removed redudent features, upgraded interpolation

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• compilation works ok

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• added debug format

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• Test 1: Test_History_box_Interp shows identical agreement with History_box_Interp

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• Test 2: mturns successfully passed from io.c to History_Box

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• tests show that mturns has been passed from io.c to history_box, so no need to keep txt print feature in io.c

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• fixed a minor bug detected in new Get_Radio_Temp_HMG function

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• added a flag Calibrate_EoR_feedback to determine whether to use EoR feedback for radio excess, default false

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• moved some variables to head

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• added empty function for calibrating Phi_mini, maybe also need to do one for PopII

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Commits on Oct 30, 2023

• dded module for EoR-calibrated Phi_ave_mini

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• oops, missed a factor in Calibrate_Phi_mini

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• allow for multiple radio sources, still have to have same spectra index though

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Commits on Oct 31, 2023

• nothing new, just testing github speed-up tool

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• changed something

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• changed things

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• kjkhug

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• found the NaN thing

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Commits on Nov 1, 2023

• all done, starting tests

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• add tests complete, ready for new run

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Commits on Nov 4, 2023

• silenced some warnings, debug feature

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• Tests complete, transfered all debug features to Radio_debug branch

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Commits on Nov 5, 2023

• addec back SFRD_box, malloc error on cluster is caused by accessing uninitialised memory so an additional line is added to Ion.c

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• moved Calibrate_Phi_mini back to the old place

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• actually let's keep the debug features for now

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Commits on Nov 6, 2023

• gfht

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Commits on Nov 8, 2023

• removed SFRD boxes to save memory, turned off debug features

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Commits on Nov 11, 2023

• sdfvfb

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Commits on Nov 14, 2023

• pass mturn info from IO.c to SP.c using mturns_EoR array in TsBox, pointer can have mem issue that I cannot solve

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• moved Radio_Temp_ave outside mpi loop, relavent only for EoR calibration

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Commits on Nov 15, 2023

• removed initialisation for Trad_box and History_box, did this later

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Commits on Nov 16, 2023

• added mpi clauses for radio module

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Commits on Aug 9, 2024

• added SFRD feature

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Commits on Sep 15, 2024

• Some test features added and then removed

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