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Update perturbIC.py #5

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577fc36
Update perturbIC.py
leoberhelman Oct 16, 2024
f9303f9
Update perturbIC.py
leoberhelman Oct 16, 2024
30b6c2d
Refactored changes to the perturbIC. Most of the code is not in small…
leoberhelman Oct 22, 2024
1d93ff4
Update perturbIC.py
leoberhelman Oct 24, 2024
3e04572
Create github-actions-demo.yml
leoberhelman Oct 25, 2024
a5c35d8
Create perturbIC_test.py
leoberhelman Oct 25, 2024
7b3843a
Rename github-actions-demo.yml to unit_testing_umfile_utils.yml
leoberhelman Oct 27, 2024
a83735d
Update unit_testing_umfile_utils.yml
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Create pyproject.toml
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Update perturbIC_test.py
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4063e62
Update perturbIC_test.py
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Create __init__.py
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Update perturbIC.py
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389805b
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065eff9
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Update perturbIC.py
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Update perturbIC.py
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Update perturbIC_test.py
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Update unit_testing_umfile_utils.yml
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Update perturbIC.py
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Update perturbIC.py
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48234ab
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Update perturbIC.py
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Update perturbIC_test.py
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45 changes: 45 additions & 0 deletions .github/workflows/ unit_testing_umfile_utils.yml
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name: CI

on:
push:
branches: main
pull_request:
branches: main
workflow_dispatch:

jobs:

test:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.10", "3.11", "3.12"]

steps:
- name: Checkout Repository
uses: actions/checkout@v4

- name: Setup conda environment
uses: conda-incubator/setup-miniconda@v3
with:
miniconda-version: "latest"
python-version: ${{ matrix.python-version }}
environment-file: environment-dev.yml
auto-activate-base: false
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activate-environment: umfile-utils-dev
auto-update-conda: false
show-channel-urls: true

- name: Install source
shell: bash -l {0}
run: python -m pip install --no-deps --no-build-isolation -e .

- name: List installed packages
shell: bash -l {0}
run: conda list

- name: Run tests
shell: bash -l {0}
run: python -m pytest --cov=src --cov-report=html -s tests

201 changes: 201 additions & 0 deletions LICENSE
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17 changes: 17 additions & 0 deletions environment-dev.yml
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name: umfile-utils-dev
channels:
- accessnri
- conda-forge
- coecms
- nodefaults
dependencies:
- python >=3.10, <=3.12
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- pytest
- xarray
- mule
- numpy < 2
- versioneer
- ipykernel
- pytest-cov
- pip

38 changes: 38 additions & 0 deletions pyproject.toml
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[project]
name = "umfile-utils"
version = "0.1.0"
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authors = [
{name = "Martin Dix", email="[email protected]"},
{name = "Lindsey Oberhelman", email="[email protected]"},
{name = "Davide Marchegiani", email="[email protected]"},
]
description = "Collection of tools for UM fieldsfiles."
license = { file = "LICENSE" }
keywords = ["UM", "UM utilities", "UM fields files", "umfile_utils"]
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dependencies = [
"mule",
"numpy <2",
"versioneer",
]

[project.urls]
Repository = "https://github.com/ACCESS-NRI/umfile_utils"

[build-system]
build-backend = "setuptools.build_meta"
requires = [
"setuptools>64",
"versioneer[toml]"
]

[tool.setuptools.packages.find]
where = ["src"]
namespaces = false

[tool.versioneer]
VCS = "git"
style = "pep440"
versionfile_source = "src/umfile_utils/_version.py"
versionfile_build = "umfile_utils/_version.py"
tag_prefix = ""
parentdir_prefix = "umfile-utils-"
7 changes: 7 additions & 0 deletions setup.py
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import versioneer
from setuptools import setup

setup(
version=versioneer.get_version(),
cmdclass=versioneer.get_cmdclass(),
)
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