Benchmark of PrecisonProDB 1.0

Benchmark

Tested with a computing node with Intel Xeon CPU E5-2695 v4 @ 2.10GHz and 256GB memory, with GENCODE gene models and a variant file in text format from gnomAD 3.1 as input.

• Depending on the available resources, a thread of 8 to 12 is recommendded.
• If the variant file is in text format, typical running time will be 15 to 20 minutes
• If the variant file is in VCF format, typical running time will be 30 to 40 minutes.

CPU/Memory consumption with 8 threads

Running time and required memory with different threads