Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Finalize notebook links in schedule #18

Merged
merged 1 commit into from
May 30, 2024
Merged

Finalize notebook links in schedule #18

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
18 changes: 9 additions & 9 deletions workshop/SCHEDULE.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -13,9 +13,9 @@ The planned schedule for the June 2024 Data Lab Virtual Training Workshop "Intro
|-------------|--------------------------------------------|----------------|
| **Day 1** | **2024-06-10** <br> _**Introduction to R and the Tidyverse**_ |
| 12:00 PM | Welcome, Introductions and Getting Started <br> [Workshop introduction slides (PDF)](#STUB) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 1:00 PM | [Introduction to base R](#../completed-notebooks/01-intro_to_base_R.nb.html) <br> [Introduction to R, RStudio, and RStudio Server slides (PDF)](#STUB) | Zoom: [Main Session](../software-setup/zoom-procedures.md)|
| 2:30 PM | [Introduction to `ggplot2`](#../completed-notebooks/02-intro_to_ggplot2.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 3:30 PM | [Introduction to the `tidyverse`](#../completed-notebooks/03-intro_to_tidyverse.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 1:00 PM | [Introduction to base R](../completed-notebooks/intro-to-R-tidyverse/01-intro_to_base_R.nb.html) <br> [Introduction to R, RStudio, and RStudio Server slides (PDF)](#STUB) | Zoom: [Main Session](../software-setup/zoom-procedures.md)|
| 2:30 PM | [Introduction to `ggplot2`](../completed-notebooks/intro-to-R-tidyverse/02-intro_to_ggplot2.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 3:30 PM | [Introduction to the `tidyverse`](../completed-notebooks/intro-to-R-tidyverse/03-intro_to_tidyverse.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 4:30 PM | Questions and introduction to the exercises | Zoom: [Breakout Rooms](../software-setup/zoom-procedures.md#using-breakout-rooms) |
| | [Exercise: Introduction to base R](https://github.com/AlexsLemonade/training-modules/blob/{{site.release_tag}}/intro-to-R-tidyverse/exercise_01-intro_to_base_R.Rmd) | |
| | [Exercise: Introduction to R](https://github.com/AlexsLemonade/training-modules/blob/{{site.release_tag}}/intro-to-R-tidyverse/exercise_02-intro_to_R.Rmd) | |
Expand All @@ -26,24 +26,24 @@ The planned schedule for the June 2024 Data Lab Virtual Training Workshop "Intro
| | | |
| **Day 2** | **2024-06-11** <br> _**Introduction to Single-cell RNA-seq, Day 1**_ |
| 12:00 PM | Introduction <br> [Introduction to scRNA-seq slides (PDF)](#STUB) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 12:30 PM | [scRNA-seq quantification with Alevin](#../completed-notebooks/01-scRNA_quant_qc.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md)|
| 1:30 PM | [Importing data and filtering cells](#../completed-notebooks/02-filtering_scRNA.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 2:30 PM | [Normalization of expression data](#../completed-notebooks/03-normalizing_scRNA.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 12:30 PM | [scRNA-seq quantification with Alevin](../completed-notebooks/scRNA-seq/01-scRNA_quant_qc.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md)|
| 1:30 PM | [Importing data and filtering cells](../completed-notebooks/scRNA-seq/02-filtering_scRNA.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 2:30 PM | [Normalization of expression data](../completed-notebooks/scRNA-seq/03-normalizing_scRNA.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 3:30 PM | Questions and introduction to the exercise | Zoom: [Breakout Rooms](../software-setup/zoom-procedures.md#using-breakout-rooms) |
| | [Exercise: scRNA-seq quantification](https://github.com/AlexsLemonade/training-modules/blob/{{site.release_tag}}/scRNA-seq/exercise_01-scrna_quant.Rmd) | |
| | Exercises and [consultation sessions](workshop-logistics.md#consultation-sessions) | [Slack channel](../software-setup/slack-procedures.md) |
| 5:00 PM | *Adjourn for the day* |
| | | |
| **Day 3** | **2024-06-12** <br> _**Introduction to Single-cell RNA-seq, Day 2**_ |
| 12:00 PM | [Dimension reduction & visualization](#../completed-notebooks/04-dimension_reduction_scRNA.nb.html) <br> [Dimension reduction and clustering slides (PDF)](#STUB) | Zoom: [Main Session](../software-setup/zoom-procedures.md)|
| 1:30 PM | [Clustering and marker identification](#../completed-notebooks/05-clustering_markers_scRNA.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 12:00 PM | [Dimension reduction & visualization](../completed-notebooks/scRNA-seq/04-dimension_reduction_scRNA.nb.html) <br> [Dimension reduction and clustering slides (PDF)](#STUB) | Zoom: [Main Session](../software-setup/zoom-procedures.md)|
| 1:30 PM | [Clustering and marker identification](../completed-notebooks/scRNA-seq/05-clustering_markers_scRNA.nb.html) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 3:00 PM | Questions and introduction to the exercise | Zoom: [Breakout Rooms](../software-setup/zoom-procedures.md#using-breakout-rooms) |
| | [Exercise: scRNA-seq clustering](https://github.com/AlexsLemonade/training-modules/blob/{{site.release_tag}}/scRNA-seq/exercise_02-scrna_clustering.Rmd) | |
| | Exercises and [consultation sessions](workshop-logistics.md#consultation-sessions) | [Slack channel](../software-setup/slack-procedures.md) |
| 5:00 PM | *Adjourn for the day* |
| | | |
| **Day 4** | **2024-06-13** <br> _**Introduction to Single-cell RNA-seq, Day 3**_ | |
| 12:00 PM | [Cell type annotation](#../completed-notebooks/06-celltype_annotation.nb.html) <br> [Cell type annotation slides (PDF)](#STUB) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 12:00 PM | [Cell type annotation](../completed-notebooks/scRNA-seq/06-celltype_annotation.nb.html) <br> [Cell type annotation slides (PDF)](#STUB) | Zoom: [Main Session](../software-setup/zoom-procedures.md) |
| 2:30 PM | Questions and introduction to the exercise | Zoom: [Breakout Rooms](../software-setup/zoom-procedures.md#using-breakout-rooms) |
| | Exercises and [consultation sessions](workshop-logistics.md#consultation-sessions) | [Slack channel](../software-setup/slack-procedures.md)|
| | [Exercise: scRNA-seq cell type annotation](https://github.com/AlexsLemonade/training-modules/blob/{{site.release_tag}}/scRNA-seq/exercise_03-celltype.Rmd) | |
Expand Down